RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 LINC00643Q86TS7 51 aa9.43□□□□□ -0.9
LIG1-204ENST00000542460 C9orf92A6NGG3 77 aa9.42□□□□□ -0.9
LIG1-204ENST00000542460 J3KT08 172 aa9.42□□□□□ -0.9
LIG1-204ENST00000542460 LINC00846Q9NV44 126 aa9.4□□□□□ -0.91
LIG1-204ENST00000542460 IMUPQ9GZP8 106 aa9.39□□□□□ -0.91
LIG1-204ENST00000542460 XP32Q5T750 250 aa9.36□□□□□ -0.91
LIG1-204ENST00000542460 Q6ZVQ6 151 aa9.36□□□□□ -0.91
LIG1-204ENST00000542460 UBL5Q9BZL1 73 aa9.36□□□□□ -0.91
LIG1-204ENST00000542460 NDUFB1O75438 58 aa9.34□□□□□ -0.91
LIG1-204ENST00000542460 IGHV6-1A0A0B4J1U7 121 aa9.32□□□□□ -0.92
LIG1-204ENST00000542460 A0A1B0GVX0 72 aa9.32□□□□□ -0.92
LIG1-204ENST00000542460 A8MWP4 228 aa9.32□□□□□ -0.92
LIG1-204ENST00000542460 BPY2O14599 106 aa9.31□□□□□ -0.92
LIG1-204ENST00000542460 LINC00313P59037 77 aa9.31□□□□□ -0.92
LIG1-204ENST00000542460 IGKV3D-7A0A0C4DH55 119 aa9.31□□□□□ -0.92
LIG1-204ENST00000542460 DSCR10P59022 87 aa9.31□□□□□ -0.92
LIG1-204ENST00000542460 ATP5EP2Q5VTU8 51 aa9.3□□□□□ -0.92
LIG1-204ENST00000542460 ANAPC13Q9BS18 74 aa9.29□□□□□ -0.92
LIG1-204ENST00000542460 C8orf87E5RJ46 101 aa9.28□□□□□ -0.92
LIG1-204ENST00000542460 NOTCH2NLQ7Z3S9 236 aa9.26□□□□□ -0.93
LIG1-204ENST00000542460 PRR15Q8IV56 129 aa9.26□□□□□ -0.93
LIG1-204ENST00000542460 FAM236AA0A1B0GUQ0 79 aa9.25□□□□□ -0.93
LIG1-204ENST00000542460 FAM236BA0A1B0GV22 79 aa9.25□□□□□ -0.93
LIG1-204ENST00000542460 SEC61BP60468 96 aaKnown RBP9.24□□□□□ -0.93
LIG1-204ENST00000542460 K7EQZ3 153 aa9.23□□□□□ -0.93
LIG1-204ENST00000542460 RPL37P61927 97 aaKnown RBP9.23□□□□□ -0.93
LIG1-204ENST00000542460 KRTAP16-1A8MUX0 517 aa9.21□□□□□ -0.93
LIG1-204ENST00000542460 Q75L30 129 aa9.21□□□□□ -0.93
LIG1-204ENST00000542460 C8orf17Q9NRJ1 99 aa9.21□□□□□ -0.93
LIG1-204ENST00000542460 HIST1H4AP62805 103 aaKnown RBP9.21□□□□□ -0.94
LIG1-204ENST00000542460 C20orf166-AS1Q96NR2 134 aa9.21□□□□□ -0.94
LIG1-204ENST00000542460 MUC2Q02817 5179 aa9.2□□□□□ -0.94
LIG1-204ENST00000542460 A8MUU9 505 aa9.19□□□□□ -0.94
LIG1-204ENST00000542460 CXCL6P80162 114 aa9.19□□□□□ -0.94
LIG1-204ENST00000542460 Q8N9L7 120 aa9.18□□□□□ -0.94
LIG1-204ENST00000542460 A0A087WVE0 104 aa9.17□□□□□ -0.94
LIG1-204ENST00000542460 MUC17Q685J3 4493 aa9.17□□□□□ -0.94
LIG1-204ENST00000542460 MMP24-AS1A0A0U1RRL7 71 aa9.15□□□□□ -0.94
LIG1-204ENST00000542460 PCOTHQ58A44 107 aa9.15□□□□□ -0.94
LIG1-204ENST00000542460 ATP11AUNQ6ZP68 121 aa9.15□□□□□ -0.95
LIG1-204ENST00000542460 ATOX1O00244 68 aa9.13□□□□□ -0.95
LIG1-204ENST00000542460 hDV103S1A0JD37 113 aa9.11□□□□□ -0.95
LIG1-204ENST00000542460 TMEM254Q8TBM7 123 aa9.11□□□□□ -0.95
LIG1-204ENST00000542460 Q8N9P0 234 aaPredicted RBP9.1□□□□□ -0.95
LIG1-204ENST00000542460 MRPL34Q9BQ48 92 aaKnown RBP9.1□□□□□ -0.95
LIG1-204ENST00000542460 CASC2Q6XLA1 102 aa9.08□□□□□ -0.96
LIG1-204ENST00000542460 WFDC13Q8IUB5 93 aa9.06□□□□□ -0.96
LIG1-204ENST00000542460 HCG22E2RYF7 251 aa9.05□□□□□ -0.96
LIG1-204ENST00000542460 CCDC179H3BU77 68 aa9.05□□□□□ -0.96
LIG1-204ENST00000542460 UQCRQO14949 82 aa9.05□□□□□ -0.96
LIG1-204ENST00000542460 A0A0U1RQV1 116 aa9.04□□□□□ -0.96
LIG1-204ENST00000542460 KRTAP4-1Q9BYQ7 146 aa9.04□□□□□ -0.96
LIG1-204ENST00000542460 NDUFS5O43920 106 aa9□□□□□ -0.97
LIG1-204ENST00000542460 COX7CP15954 63 aa9□□□□□ -0.97
LIG1-204ENST00000542460 ZCCHC13Q8WW36 166 aaKnown RBP9□□□□□ -0.97
LIG1-204ENST00000542460 SMIM20Q8N5G0 67 aa8.98□□□□□ -0.97
LIG1-204ENST00000542460 SERP2Q8N6R1 65 aa8.98□□□□□ -0.97
LIG1-204ENST00000542460 FAT4Q6V0I7 4981 aa8.98□□□□□ -0.97
LIG1-204ENST00000542460 TRAV7A0A075B6U4 112 aa8.9□□□□□ -0.98
LIG1-204ENST00000542460 TP53AIP1Q9HCN2 124 aa8.89□□□□□ -0.99
LIG1-204ENST00000542460 Q5W150 140 aa8.86□□□□□ -0.99
LIG1-204ENST00000542460 SPINK7P58062 85 aa8.83□□□□□ -1
LIG1-204ENST00000542460 LCE2AQ5TA79 106 aaPredicted RBP8.83□□□□□ -1
LIG1-204ENST00000542460 C20orf197Q8N268 126 aa8.8□□□□□ -1
LIG1-204ENST00000542460 TMEM258P61165 79 aa8.8□□□□□ -1
LIG1-204ENST00000542460 OCR1Q9BZK8 76 aa8.78□□□□□ -1
LIG1-204ENST00000542460 KRTAP19-2Q3LHN2 52 aa8.76□□□□□ -1.01
LIG1-204ENST00000542460 HRES1P13985 223 aa8.75□□□□□ -1.01
LIG1-204ENST00000542460 CYSTM1Q9H1C7 97 aa8.75□□□□□ -1.01
LIG1-204ENST00000542460 IGKV2D-30A0A075B6S6 120 aa8.75□□□□□ -1.01
LIG1-204ENST00000542460 IGKV2-30P06310 120 aa8.75□□□□□ -1.01
LIG1-204ENST00000542460 C7orf65Q6ZTY9 151 aa8.74□□□□□ -1.01
LIG1-204ENST00000542460 COX6B2Q6YFQ2 88 aa8.73□□□□□ -1.01
LIG1-204ENST00000542460 TRAV22A0A0B4J277 110 aa8.72□□□□□ -1.01
LIG1-204ENST00000542460 NDUFC1O43677 76 aa8.72□□□□□ -1.01
LIG1-204ENST00000542460 KLKP1Q107X0 134 aa8.72□□□□□ -1.01
LIG1-204ENST00000542460 MPLKIPQ8TAP9 179 aa8.72□□□□□ -1.01
LIG1-204ENST00000542460 SNURFQ9Y675 71 aa8.72□□□□□ -1.01
LIG1-204ENST00000542460 LCE2CQ5TA81 110 aa8.71□□□□□ -1.01
LIG1-204ENST00000542460 RBM12B-AS1Q9P1G2 102 aa8.71□□□□□ -1.01
LIG1-204ENST00000542460 KRTAP9-2Q9BYQ4 174 aa8.7□□□□□ -1.02
LIG1-204ENST00000542460 RPS28P62857 69 aaKnown RBP8.66□□□□□ -1.02
LIG1-204ENST00000542460 H0Y9P7 68 aa8.65□□□□□ -1.02
LIG1-204ENST00000542460 FAM236DA0A1B0GTK5 79 aa8.64□□□□□ -1.03
LIG1-204ENST00000542460 FAM236CP0DP71 79 aa8.64□□□□□ -1.03
LIG1-204ENST00000542460 ATP5EP56381 51 aaPredicted RBP8.64□□□□□ -1.03
LIG1-204ENST00000542460 LOC101927531A0A1B0GV80 90 aa8.63□□□□□ -1.03
LIG1-204ENST00000542460 H7BZZ5 65 aa8.62□□□□□ -1.03
LIG1-204ENST00000542460 C5orf47Q569G3 176 aa8.62□□□□□ -1.03
LIG1-204ENST00000542460 MP68P56378 58 aa8.6□□□□□ -1.03
LIG1-204ENST00000542460 CYP4F30PQ9H0H9 118 aa8.6□□□□□ -1.03
LIG1-204ENST00000542460 MT1HP80294 61 aa8.58□□□□□ -1.04
LIG1-204ENST00000542460 C1orf64Q8NEQ6 169 aa8.58□□□□□ -1.04
LIG1-204ENST00000542460 LINC00208Q96KT6 92 aa8.56□□□□□ -1.04
LIG1-204ENST00000542460 C4orf26Q17RF5 130 aa8.55□□□□□ -1.04
LIG1-204ENST00000542460 FLGP20930 4061 aaPredicted RBP8.54□□□□□ -1.04
LIG1-204ENST00000542460 H3BPC8 53 aa8.54□□□□□ -1.04
LIG1-204ENST00000542460 SERP1Q9Y6X1 66 aa8.5□□□□□ -1.05
LIG1-204ENST00000542460 M0R2T5 61 aa8.49□□□□□ -1.05
LIG1-204ENST00000542460 H1FX-AS1Q4G0G2 97 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms