RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 SPCS1Q9Y6A9 102 aa8.27□□□□□ -1.09
CLSTN3-204ENST00000535313 CCKP06307 115 aa8.25□□□□□ -1.09
CLSTN3-204ENST00000535313 SMCPP49901 116 aaPredicted RBP8.25□□□□□ -1.09
CLSTN3-204ENST00000535313 K7EP34 96 aa8.23□□□□□ -1.09
CLSTN3-204ENST00000535313 DEFB116Q30KQ4 102 aa8.23□□□□□ -1.09
CLSTN3-204ENST00000535313 PRO0461Q9UI25 63 aa8.23□□□□□ -1.09
CLSTN3-204ENST00000535313 KRTAP16-1A8MUX0 517 aa8.22□□□□□ -1.09
CLSTN3-204ENST00000535313 LINC00472Q9H8W2 130 aa8.22□□□□□ -1.09
CLSTN3-204ENST00000535313 H3BT86 120 aa8.21□□□□□ -1.1
CLSTN3-204ENST00000535313 RBM3P98179 157 aaKnown RBP8.21□□□□□ -1.1
CLSTN3-204ENST00000535313 IGHV6-1A0A0B4J1U7 121 aa8.2□□□□□ -1.1
CLSTN3-204ENST00000535313 NOTCH2NLQ7Z3S9 236 aa8.2□□□□□ -1.1
CLSTN3-204ENST00000535313 FAM236DA0A1B0GTK5 79 aa8.19□□□□□ -1.1
CLSTN3-204ENST00000535313 FAM236CP0DP71 79 aa8.19□□□□□ -1.1
CLSTN3-204ENST00000535313 VPS25Q9BRG1 176 aa8.19□□□□□ -1.1
CLSTN3-204ENST00000535313 Q6ZQT0 140 aa8.18□□□□□ -1.1
CLSTN3-204ENST00000535313 C14orf132Q9NPU4 83 aa8.17□□□□□ -1.1
CLSTN3-204ENST00000535313 LOC110117498A0A087WWA1 95 aa8.16□□□□□ -1.1
CLSTN3-204ENST00000535313 DSCR8Q96T75 97 aa8.16□□□□□ -1.1
CLSTN3-204ENST00000535313 RBM12B-AS1Q9P1G2 102 aa8.16□□□□□ -1.1
CLSTN3-204ENST00000535313 KRTAP9-8Q9BYQ0 159 aa8.15□□□□□ -1.1
CLSTN3-204ENST00000535313 C8orf87E5RJ46 101 aa8.14□□□□□ -1.11
CLSTN3-204ENST00000535313 JMJD7-PLA2G4BH0Y9G9 81 aa8.14□□□□□ -1.11
CLSTN3-204ENST00000535313 A0A1B0GVX0 72 aa8.13□□□□□ -1.11
CLSTN3-204ENST00000535313 HRES1P13985 223 aa8.11□□□□□ -1.11
CLSTN3-204ENST00000535313 C21orf62-AS1Q17RA5 79 aa8.11□□□□□ -1.11
CLSTN3-204ENST00000535313 MPLKIPQ8TAP9 179 aa8.1□□□□□ -1.11
CLSTN3-204ENST00000535313 J3KT08 172 aa8.09□□□□□ -1.11
CLSTN3-204ENST00000535313 GTF2H5Q6ZYL4 71 aa8.08□□□□□ -1.12
CLSTN3-204ENST00000535313 A0A1B0GV90 55 aa8.05□□□□□ -1.12
CLSTN3-204ENST00000535313 PDE6GP18545 87 aa8.05□□□□□ -1.12
CLSTN3-204ENST00000535313 USH2AO75445 5202 aa8.05□□□□□ -1.12
CLSTN3-204ENST00000535313 NDUFB1O75438 58 aa8.04□□□□□ -1.12
CLSTN3-204ENST00000535313 ZCCHC13Q8WW36 166 aaKnown RBP8.04□□□□□ -1.12
CLSTN3-204ENST00000535313 MT2AP02795 61 aa8.03□□□□□ -1.12
CLSTN3-204ENST00000535313 F8W1H4 67 aa8.01□□□□□ -1.13
CLSTN3-204ENST00000535313 SSPOA2VEC9 5147 aa8□□□□□ -1.13
CLSTN3-204ENST00000535313 A0A1B0GW54 56 aa8□□□□□ -1.13
CLSTN3-204ENST00000535313 SPINK7P58062 85 aa8□□□□□ -1.13
CLSTN3-204ENST00000535313 ETDBQ3ZM63 59 aa8□□□□□ -1.13
CLSTN3-204ENST00000535313 Q8N9P0 234 aaPredicted RBP7.98□□□□□ -1.13
CLSTN3-204ENST00000535313 A8MWP4 228 aa7.97□□□□□ -1.13
CLSTN3-204ENST00000535313 MT1FP04733 61 aa7.97□□□□□ -1.13
CLSTN3-204ENST00000535313 KRTAP10-10P60014 251 aa7.97□□□□□ -1.13
CLSTN3-204ENST00000535313 C8orf17Q9NRJ1 99 aa7.96□□□□□ -1.14
CLSTN3-204ENST00000535313 IGKV3D-7A0A0C4DH55 119 aa7.93□□□□□ -1.14
CLSTN3-204ENST00000535313 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.91□□□□□ -1.14
CLSTN3-204ENST00000535313 Q6ZVQ6 151 aa7.91□□□□□ -1.14
CLSTN3-204ENST00000535313 LINC00846Q9NV44 126 aa7.91□□□□□ -1.14
CLSTN3-204ENST00000535313 KRTAP9-3Q9BYQ3 159 aa7.9□□□□□ -1.14
CLSTN3-204ENST00000535313 LCE2BO14633 110 aa7.89□□□□□ -1.15
CLSTN3-204ENST00000535313 NREPQ16612 68 aa7.89□□□□□ -1.15
CLSTN3-204ENST00000535313 WFDC13Q8IUB5 93 aa7.89□□□□□ -1.15
CLSTN3-204ENST00000535313 PRR15Q8IV56 129 aa7.88□□□□□ -1.15
CLSTN3-204ENST00000535313 KRTAP9-7A8MTY7 169 aa7.85□□□□□ -1.15
CLSTN3-204ENST00000535313 FCGBPQ9Y6R7 5405 aaPredicted RBP7.83□□□□□ -1.16
CLSTN3-204ENST00000535313 K7EQZ3 153 aa7.83□□□□□ -1.16
CLSTN3-204ENST00000535313 TMEM254Q8TBM7 123 aa7.83□□□□□ -1.16
CLSTN3-204ENST00000535313 KRTAP19-1Q8IUB9 90 aa7.82□□□□□ -1.16
CLSTN3-204ENST00000535313 MRPL34Q9BQ48 92 aaKnown RBP7.82□□□□□ -1.16
CLSTN3-204ENST00000535313 MMP24-AS1A0A0U1RRL7 71 aa7.81□□□□□ -1.16
CLSTN3-204ENST00000535313 BPY2O14599 106 aa7.8□□□□□ -1.16
CLSTN3-204ENST00000535313 Q8N9L7 120 aa7.8□□□□□ -1.16
CLSTN3-204ENST00000535313 hDV103S1A0JD37 113 aa7.79□□□□□ -1.16
CLSTN3-204ENST00000535313 NDUFS5O43920 106 aa7.78□□□□□ -1.16
CLSTN3-204ENST00000535313 UBL5Q9BZL1 73 aa7.77□□□□□ -1.17
CLSTN3-204ENST00000535313 FAM240AA0A1B0GVK7 77 aa7.75□□□□□ -1.17
CLSTN3-204ENST00000535313 H1FX-AS1Q4G0G2 97 aa7.73□□□□□ -1.17
CLSTN3-204ENST00000535313 IGKV2D-30A0A075B6S6 120 aa7.7□□□□□ -1.18
CLSTN3-204ENST00000535313 IGKV2-30P06310 120 aa7.7□□□□□ -1.18
CLSTN3-204ENST00000535313 ACYP1P07311 99 aa7.69□□□□□ -1.18
CLSTN3-204ENST00000535313 MACF1Q9UPN3 7388 aaKnown RBP7.69□□□□□ -1.18
CLSTN3-204ENST00000535313 CXCL6P80162 114 aa7.68□□□□□ -1.18
CLSTN3-204ENST00000535313 C7orf65Q6ZTY9 151 aa7.68□□□□□ -1.18
CLSTN3-204ENST00000535313 SYNE2Q8WXH0 6885 aaKnown RBP7.66□□□□□ -1.18
CLSTN3-204ENST00000535313 KRTAP19-6Q3LI70 58 aa7.65□□□□□ -1.18
CLSTN3-204ENST00000535313 Q5W150 140 aa7.65□□□□□ -1.18
CLSTN3-204ENST00000535313 CASC2Q6XLA1 102 aa7.64□□□□□ -1.19
CLSTN3-204ENST00000535313 HCG22E2RYF7 251 aa7.62□□□□□ -1.19
CLSTN3-204ENST00000535313 ATP5EP2Q5VTU8 51 aa7.58□□□□□ -1.2
CLSTN3-204ENST00000535313 LINC00643Q86TS7 51 aa7.57□□□□□ -1.2
CLSTN3-204ENST00000535313 C4orf26Q17RF5 130 aa7.56□□□□□ -1.2
CLSTN3-204ENST00000535313 A0A087WVE0 104 aa7.52□□□□□ -1.21
CLSTN3-204ENST00000535313 J3QR89 54 aa7.52□□□□□ -1.21
CLSTN3-204ENST00000535313 HIST1H4AP62805 103 aaKnown RBP7.48□□□□□ -1.21
CLSTN3-204ENST00000535313 C5orf47Q569G3 176 aa7.47□□□□□ -1.21
CLSTN3-204ENST00000535313 FAM236AA0A1B0GUQ0 79 aa7.45□□□□□ -1.22
CLSTN3-204ENST00000535313 FAM236BA0A1B0GV22 79 aa7.45□□□□□ -1.22
CLSTN3-204ENST00000535313 K7ERU9 68 aa7.44□□□□□ -1.22
CLSTN3-204ENST00000535313 S4R3F8 94 aa7.43□□□□□ -1.22
CLSTN3-204ENST00000535313 C1orf64Q8NEQ6 169 aa7.42□□□□□ -1.22
CLSTN3-204ENST00000535313 MT-ATP8P03928 68 aa7.41□□□□□ -1.22
CLSTN3-204ENST00000535313 KRTAP3-1Q9BYR8 98 aa7.41□□□□□ -1.22
CLSTN3-204ENST00000535313 CSAG1Q6PB30 78 aa7.4□□□□□ -1.22
CLSTN3-204ENST00000535313 TP53AIP1Q9HCN2 124 aa7.4□□□□□ -1.22
CLSTN3-204ENST00000535313 KRTAP6-3Q3LI67 103 aa7.36□□□□□ -1.23
CLSTN3-204ENST00000535313 LCA10Q71F78 164 aa7.36□□□□□ -1.23
CLSTN3-204ENST00000535313 OCR1Q9BZK8 76 aa7.35□□□□□ -1.23
CLSTN3-204ENST00000535313 TRAV22A0A0B4J277 110 aa7.32□□□□□ -1.24
CLSTN3-204ENST00000535313 Q5VV11 94 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms