RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ATP11AUNQ6ZP68 121 aa6.8□□□□□ -1.32
VPS28-216ENST00000533806 C14orf132Q9NPU4 83 aa6.8□□□□□ -1.32
VPS28-216ENST00000533806 COL5A1-AS1Q5SY13 56 aa6.78□□□□□ -1.32
VPS28-216ENST00000533806 J3KT08 172 aa6.77□□□□□ -1.33
VPS28-216ENST00000533806 IGHV6-1A0A0B4J1U7 121 aa6.76□□□□□ -1.33
VPS28-216ENST00000533806 A0A1B0GVX0 72 aa6.76□□□□□ -1.33
VPS28-216ENST00000533806 MTURNQ8N3F0 131 aa6.76□□□□□ -1.33
VPS28-216ENST00000533806 SPCS1Q9Y6A9 102 aa6.75□□□□□ -1.33
VPS28-216ENST00000533806 PCP4L1A6NKN8 68 aa6.74□□□□□ -1.33
VPS28-216ENST00000533806 SMCPP49901 116 aaPredicted RBP6.74□□□□□ -1.33
VPS28-216ENST00000533806 C8orf87E5RJ46 101 aa6.73□□□□□ -1.33
VPS28-216ENST00000533806 MT1HP80294 61 aa6.73□□□□□ -1.33
VPS28-216ENST00000533806 PRO0461Q9UI25 63 aa6.72□□□□□ -1.33
VPS28-216ENST00000533806 FLGP20930 4061 aaPredicted RBP6.71□□□□□ -1.34
VPS28-216ENST00000533806 IGKV3D-7A0A0C4DH55 119 aa6.69□□□□□ -1.34
VPS28-216ENST00000533806 A8MWP4 228 aa6.69□□□□□ -1.34
VPS28-216ENST00000533806 K7EP34 96 aa6.69□□□□□ -1.34
VPS28-216ENST00000533806 NREPQ16612 68 aa6.69□□□□□ -1.34
VPS28-216ENST00000533806 NDUFB1O75438 58 aa6.67□□□□□ -1.34
VPS28-216ENST00000533806 Q8N9P0 234 aaPredicted RBP6.66□□□□□ -1.34
VPS28-216ENST00000533806 PRR15Q8IV56 129 aa6.65□□□□□ -1.34
VPS28-216ENST00000533806 C8orf17Q9NRJ1 99 aa6.65□□□□□ -1.34
VPS28-216ENST00000533806 COX6B2Q6YFQ2 88 aa6.62□□□□□ -1.35
VPS28-216ENST00000533806 KRTAP9-2Q9BYQ4 174 aa6.62□□□□□ -1.35
VPS28-216ENST00000533806 MPLKIPQ8TAP9 179 aa6.61□□□□□ -1.35
VPS28-216ENST00000533806 Q6ZVQ6 151 aa6.6□□□□□ -1.35
VPS28-216ENST00000533806 ZCCHC13Q8WW36 166 aaKnown RBP6.6□□□□□ -1.35
VPS28-216ENST00000533806 MMP24-AS1A0A0U1RRL7 71 aa6.59□□□□□ -1.35
VPS28-216ENST00000533806 K7EQZ3 153 aa6.59□□□□□ -1.35
VPS28-216ENST00000533806 LORP23490 312 aaPredicted RBP6.59□□□□□ -1.35
VPS28-216ENST00000533806 GTF2H5Q6ZYL4 71 aa6.59□□□□□ -1.35
VPS28-216ENST00000533806 F8W1H4 67 aa6.58□□□□□ -1.36
VPS28-216ENST00000533806 HRES1P13985 223 aa6.58□□□□□ -1.36
VPS28-216ENST00000533806 KRTAP10-6P60371 365 aaPredicted RBP6.58□□□□□ -1.36
VPS28-216ENST00000533806 BPY2O14599 106 aa6.57□□□□□ -1.36
VPS28-216ENST00000533806 LINC00846Q9NV44 126 aa6.57□□□□□ -1.36
VPS28-216ENST00000533806 TMEM254Q8TBM7 123 aa6.55□□□□□ -1.36
VPS28-216ENST00000533806 LCE2DQ5TA82 110 aaPredicted RBP6.54□□□□□ -1.36
VPS28-216ENST00000533806 MRPL34Q9BQ48 92 aaKnown RBP6.54□□□□□ -1.36
VPS28-216ENST00000533806 hDV103S1A0JD37 113 aa6.53□□□□□ -1.36
VPS28-216ENST00000533806 SPINK7P58062 85 aa6.53□□□□□ -1.36
VPS28-216ENST00000533806 M0R2T5 61 aa6.52□□□□□ -1.37
VPS28-216ENST00000533806 ETDBQ3ZM63 59 aa6.52□□□□□ -1.37
VPS28-216ENST00000533806 Q8N9L7 120 aa6.52□□□□□ -1.37
VPS28-216ENST00000533806 UBL5Q9BZL1 73 aa6.5□□□□□ -1.37
VPS28-216ENST00000533806 RBM12B-AS1Q9P1G2 102 aa6.47□□□□□ -1.37
VPS28-216ENST00000533806 CASC2Q6XLA1 102 aa6.45□□□□□ -1.38
VPS28-216ENST00000533806 Q5W150 140 aa6.44□□□□□ -1.38
VPS28-216ENST00000533806 WFDC13Q8IUB5 93 aa6.44□□□□□ -1.38
VPS28-216ENST00000533806 FAM236DA0A1B0GTK5 79 aa6.42□□□□□ -1.38
VPS28-216ENST00000533806 NDUFS5O43920 106 aa6.42□□□□□ -1.38
VPS28-216ENST00000533806 FAM236CP0DP71 79 aa6.42□□□□□ -1.38
VPS28-216ENST00000533806 KRTAP9-8Q9BYQ0 159 aa6.42□□□□□ -1.38
VPS28-216ENST00000533806 FSIP2Q5CZC0 6907 aa6.42□□□□□ -1.38
VPS28-216ENST00000533806 CXCL6P80162 114 aa6.41□□□□□ -1.38
VPS28-216ENST00000533806 HCG22E2RYF7 251 aa6.4□□□□□ -1.38
VPS28-216ENST00000533806 A0A1B0GV90 55 aa6.38□□□□□ -1.39
VPS28-216ENST00000533806 FAM240AA0A1B0GVK7 77 aa6.37□□□□□ -1.39
VPS28-216ENST00000533806 ACYP1P07311 99 aa6.36□□□□□ -1.39
VPS28-216ENST00000533806 KRTAP9-6A0A140TA67 174 aa6.33□□□□□ -1.4
VPS28-216ENST00000533806 C7orf65Q6ZTY9 151 aa6.33□□□□□ -1.4
VPS28-216ENST00000533806 IGKV2D-30A0A075B6S6 120 aa6.32□□□□□ -1.4
VPS28-216ENST00000533806 MT2AP02795 61 aa6.32□□□□□ -1.4
VPS28-216ENST00000533806 IGKV2-30P06310 120 aa6.32□□□□□ -1.4
VPS28-216ENST00000533806 TP53AIP1Q9HCN2 124 aa6.29□□□□□ -1.4
VPS28-216ENST00000533806 USH2AO75445 5202 aa6.27□□□□□ -1.41
VPS28-216ENST00000533806 MT1FP04733 61 aa6.27□□□□□ -1.41
VPS28-216ENST00000533806 H1FX-AS1Q4G0G2 97 aa6.27□□□□□ -1.41
VPS28-216ENST00000533806 ATP5EP2Q5VTU8 51 aa6.27□□□□□ -1.41
VPS28-216ENST00000533806 CRCT1Q9UGL9 99 aa6.27□□□□□ -1.41
VPS28-216ENST00000533806 C4orf26Q17RF5 130 aa6.23□□□□□ -1.41
VPS28-216ENST00000533806 LINC00643Q86TS7 51 aa6.22□□□□□ -1.41
VPS28-216ENST00000533806 KRTAP9-3Q9BYQ3 159 aa6.22□□□□□ -1.41
VPS28-216ENST00000533806 KRTAP3-1Q9BYR8 98 aa6.22□□□□□ -1.41
VPS28-216ENST00000533806 KRTAP10-10P60014 251 aa6.19□□□□□ -1.42
VPS28-216ENST00000533806 SSPOA2VEC9 5147 aa6.18□□□□□ -1.42
VPS28-216ENST00000533806 HIST1H4AP62805 103 aaKnown RBP6.18□□□□□ -1.42
VPS28-216ENST00000533806 A0A087WVE0 104 aa6.16□□□□□ -1.42
VPS28-216ENST00000533806 CYP4F30PQ9H0H9 118 aa6.16□□□□□ -1.42
VPS28-216ENST00000533806 TRAV22A0A0B4J277 110 aa6.15□□□□□ -1.42
VPS28-216ENST00000533806 LCE2BO14633 110 aa6.15□□□□□ -1.42
VPS28-216ENST00000533806 UQCRQO14949 82 aa6.13□□□□□ -1.43
VPS28-216ENST00000533806 C1orf64Q8NEQ6 169 aa6.13□□□□□ -1.43
VPS28-216ENST00000533806 LOC101927531A0A1B0GV80 90 aa6.11□□□□□ -1.43
VPS28-216ENST00000533806 J3QR89 54 aa6.1□□□□□ -1.43
VPS28-216ENST00000533806 ATOX1O00244 68 aa6.07□□□□□ -1.44
VPS28-216ENST00000533806 OCR1Q9BZK8 76 aa6.07□□□□□ -1.44
VPS28-216ENST00000533806 H0Y9P7 68 aa6.06□□□□□ -1.44
VPS28-216ENST00000533806 LCA10Q71F78 164 aa6.05□□□□□ -1.44
VPS28-216ENST00000533806 S4R3F8 94 aa6.05□□□□□ -1.44
VPS28-216ENST00000533806 C5orf47Q569G3 176 aa6.04□□□□□ -1.44
VPS28-216ENST00000533806 KRTAP3-3Q9BYR6 98 aa6.04□□□□□ -1.44
VPS28-216ENST00000533806 FCGBPQ9Y6R7 5405 aaPredicted RBP6.01□□□□□ -1.45
VPS28-216ENST00000533806 CSAG1Q6PB30 78 aa6□□□□□ -1.45
VPS28-216ENST00000533806 LINC00208Q96KT6 92 aa5.99□□□□□ -1.45
VPS28-216ENST00000533806 KLKP1Q107X0 134 aa5.98□□□□□ -1.45
VPS28-216ENST00000533806 KRTAP19-1Q8IUB9 90 aa5.96□□□□□ -1.46
VPS28-216ENST00000533806 IMUPQ9GZP8 106 aa5.96□□□□□ -1.46
VPS28-216ENST00000533806 K7ERU9 68 aa5.95□□□□□ -1.46
VPS28-216ENST00000533806 MP68P56378 58 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms