RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ATXN8Q156A1 80 aa6.54□□□□□ -1.36
CPSF1-204ENST00000529288 RBM12B-AS1Q9P1G2 102 aa6.54□□□□□ -1.36
CPSF1-204ENST00000529288 BATFQ16520 125 aa6.53□□□□□ -1.36
CPSF1-204ENST00000529288 RBM3P98179 157 aaKnown RBP6.52□□□□□ -1.37
CPSF1-204ENST00000529288 LINC00472Q9H8W2 130 aa6.52□□□□□ -1.37
CPSF1-204ENST00000529288 TAX1BP3O14907 124 aa6.51□□□□□ -1.37
CPSF1-204ENST00000529288 USH2AO75445 5202 aa6.5□□□□□ -1.37
CPSF1-204ENST00000529288 C9orf118A6NHY6 69 aa6.49□□□□□ -1.37
CPSF1-204ENST00000529288 MT2AP02795 61 aa6.49□□□□□ -1.37
CPSF1-204ENST00000529288 HRES1P13985 223 aa6.49□□□□□ -1.37
CPSF1-204ENST00000529288 DSCR8Q96T75 97 aa6.48□□□□□ -1.37
CPSF1-204ENST00000529288 LYRM7Q5U5X0 104 aa6.47□□□□□ -1.37
CPSF1-204ENST00000529288 Q6ZQT0 140 aa6.47□□□□□ -1.37
CPSF1-204ENST00000529288 SSPOA2VEC9 5147 aa6.46□□□□□ -1.38
CPSF1-204ENST00000529288 LOC110117498A0A087WWA1 95 aa6.46□□□□□ -1.38
CPSF1-204ENST00000529288 A0A1B0GVX0 72 aa6.46□□□□□ -1.38
CPSF1-204ENST00000529288 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.46□□□□□ -1.38
CPSF1-204ENST00000529288 C9JAW5 83 aa6.46□□□□□ -1.38
CPSF1-204ENST00000529288 C8orf87E5RJ46 101 aa6.46□□□□□ -1.38
CPSF1-204ENST00000529288 KRTAP10-10P60014 251 aa6.46□□□□□ -1.38
CPSF1-204ENST00000529288 A0A1W2PPM0 123 aa6.45□□□□□ -1.38
CPSF1-204ENST00000529288 MPLKIPQ8TAP9 179 aa6.45□□□□□ -1.38
CPSF1-204ENST00000529288 JMJD7-PLA2G4BH0Y9G9 81 aa6.44□□□□□ -1.38
CPSF1-204ENST00000529288 MT1FP04733 61 aa6.44□□□□□ -1.38
CPSF1-204ENST00000529288 MTURNQ8N3F0 131 aa6.43□□□□□ -1.38
CPSF1-204ENST00000529288 C14orf132Q9NPU4 83 aa6.42□□□□□ -1.38
CPSF1-204ENST00000529288 ZCCHC13Q8WW36 166 aaKnown RBP6.41□□□□□ -1.38
CPSF1-204ENST00000529288 H3BT86 120 aa6.4□□□□□ -1.38
CPSF1-204ENST00000529288 SPINK7P58062 85 aa6.4□□□□□ -1.38
CPSF1-204ENST00000529288 A0A1B0GW54 56 aa6.39□□□□□ -1.39
CPSF1-204ENST00000529288 J3KT08 172 aa6.39□□□□□ -1.39
CPSF1-204ENST00000529288 LCE2BO14633 110 aa6.38□□□□□ -1.39
CPSF1-204ENST00000529288 NDUFB1O75438 58 aa6.38□□□□□ -1.39
CPSF1-204ENST00000529288 PDE6GP18545 87 aa6.38□□□□□ -1.39
CPSF1-204ENST00000529288 C21orf62-AS1Q17RA5 79 aa6.38□□□□□ -1.39
CPSF1-204ENST00000529288 KRTAP19-1Q8IUB9 90 aa6.37□□□□□ -1.39
CPSF1-204ENST00000529288 KRTAP9-3Q9BYQ3 159 aa6.37□□□□□ -1.39
CPSF1-204ENST00000529288 SMCPP49901 116 aaPredicted RBP6.36□□□□□ -1.39
CPSF1-204ENST00000529288 SPCS1Q9Y6A9 102 aa6.36□□□□□ -1.39
CPSF1-204ENST00000529288 COL5A1-AS1Q5SY13 56 aa6.35□□□□□ -1.39
CPSF1-204ENST00000529288 FCGBPQ9Y6R7 5405 aaPredicted RBP6.33□□□□□ -1.4
CPSF1-204ENST00000529288 C8orf17Q9NRJ1 99 aa6.33□□□□□ -1.4
CPSF1-204ENST00000529288 PRO0461Q9UI25 63 aa6.33□□□□□ -1.4
CPSF1-204ENST00000529288 A8MWP4 228 aa6.32□□□□□ -1.4
CPSF1-204ENST00000529288 WFDC13Q8IUB5 93 aa6.32□□□□□ -1.4
CPSF1-204ENST00000529288 IGKV3D-7A0A0C4DH55 119 aa6.31□□□□□ -1.4
CPSF1-204ENST00000529288 Q8N9P0 234 aaPredicted RBP6.31□□□□□ -1.4
CPSF1-204ENST00000529288 K7EP34 96 aa6.3□□□□□ -1.4
CPSF1-204ENST00000529288 Q6ZVQ6 151 aa6.28□□□□□ -1.4
CPSF1-204ENST00000529288 PCP4L1A6NKN8 68 aa6.27□□□□□ -1.41
CPSF1-204ENST00000529288 NREPQ16612 68 aa6.27□□□□□ -1.41
CPSF1-204ENST00000529288 PRR15Q8IV56 129 aa6.27□□□□□ -1.41
CPSF1-204ENST00000529288 LINC00846Q9NV44 126 aa6.25□□□□□ -1.41
CPSF1-204ENST00000529288 MMP24-AS1A0A0U1RRL7 71 aa6.23□□□□□ -1.41
CPSF1-204ENST00000529288 NDUFS5O43920 106 aa6.23□□□□□ -1.41
CPSF1-204ENST00000529288 MACF1Q9UPN3 7388 aaKnown RBP6.22□□□□□ -1.41
CPSF1-204ENST00000529288 K7EQZ3 153 aa6.22□□□□□ -1.41
CPSF1-204ENST00000529288 MRPL34Q9BQ48 92 aaKnown RBP6.22□□□□□ -1.41
CPSF1-204ENST00000529288 SYNE2Q8WXH0 6885 aaKnown RBP6.21□□□□□ -1.41
CPSF1-204ENST00000529288 TMEM254Q8TBM7 123 aa6.2□□□□□ -1.42
CPSF1-204ENST00000529288 BPY2O14599 106 aa6.18□□□□□ -1.42
CPSF1-204ENST00000529288 H1FX-AS1Q4G0G2 97 aa6.18□□□□□ -1.42
CPSF1-204ENST00000529288 GTF2H5Q6ZYL4 71 aa6.18□□□□□ -1.42
CPSF1-204ENST00000529288 IGKV2D-30A0A075B6S6 120 aa6.17□□□□□ -1.42
CPSF1-204ENST00000529288 hDV103S1A0JD37 113 aa6.17□□□□□ -1.42
CPSF1-204ENST00000529288 IGKV2-30P06310 120 aa6.17□□□□□ -1.42
CPSF1-204ENST00000529288 KRTAP19-6Q3LI70 58 aa6.17□□□□□ -1.42
CPSF1-204ENST00000529288 Q8N9L7 120 aa6.16□□□□□ -1.42
CPSF1-204ENST00000529288 F8W1H4 67 aa6.15□□□□□ -1.42
CPSF1-204ENST00000529288 ETDBQ3ZM63 59 aa6.13□□□□□ -1.43
CPSF1-204ENST00000529288 Q5W150 140 aa6.1□□□□□ -1.43
CPSF1-204ENST00000529288 C7orf65Q6ZTY9 151 aa6.1□□□□□ -1.43
CPSF1-204ENST00000529288 UBL5Q9BZL1 73 aa6.1□□□□□ -1.43
CPSF1-204ENST00000529288 HCG22E2RYF7 251 aa6.07□□□□□ -1.44
CPSF1-204ENST00000529288 CASC2Q6XLA1 102 aa6.07□□□□□ -1.44
CPSF1-204ENST00000529288 C4orf26Q17RF5 130 aa6.06□□□□□ -1.44
CPSF1-204ENST00000529288 CXCL6P80162 114 aa6.02□□□□□ -1.45
CPSF1-204ENST00000529288 C5orf47Q569G3 176 aa6.02□□□□□ -1.45
CPSF1-204ENST00000529288 FAM236AA0A1B0GUQ0 79 aa6□□□□□ -1.45
CPSF1-204ENST00000529288 FAM236BA0A1B0GV22 79 aa6□□□□□ -1.45
CPSF1-204ENST00000529288 A0A1B0GV90 55 aa5.97□□□□□ -1.45
CPSF1-204ENST00000529288 FAM240AA0A1B0GVK7 77 aa5.97□□□□□ -1.45
CPSF1-204ENST00000529288 KRTAP6-3Q3LI67 103 aa5.97□□□□□ -1.45
CPSF1-204ENST00000529288 ACYP1P07311 99 aa5.95□□□□□ -1.46
CPSF1-204ENST00000529288 S4R3F8 94 aa5.94□□□□□ -1.46
CPSF1-204ENST00000529288 C1orf64Q8NEQ6 169 aa5.92□□□□□ -1.46
CPSF1-204ENST00000529288 CSAG1Q6PB30 78 aa5.91□□□□□ -1.46
CPSF1-204ENST00000529288 KRTAP3-1Q9BYR8 98 aa5.91□□□□□ -1.46
CPSF1-204ENST00000529288 A6NN06 94 aa5.9□□□□□ -1.46
CPSF1-204ENST00000529288 ATP5EP2Q5VTU8 51 aa5.89□□□□□ -1.47
CPSF1-204ENST00000529288 TP53AIP1Q9HCN2 124 aa5.89□□□□□ -1.47
CPSF1-204ENST00000529288 Q5VV11 94 aa5.88□□□□□ -1.47
CPSF1-204ENST00000529288 LCA10Q71F78 164 aa5.88□□□□□ -1.47
CPSF1-204ENST00000529288 NEBP20929 6669 aa5.87□□□□□ -1.47
CPSF1-204ENST00000529288 MT1BP07438 61 aa5.85□□□□□ -1.47
CPSF1-204ENST00000529288 LINC00643Q86TS7 51 aa5.83□□□□□ -1.48
CPSF1-204ENST00000529288 A0A087WVE0 104 aa5.81□□□□□ -1.48
CPSF1-204ENST00000529288 HIST1H4AP62805 103 aaKnown RBP5.81□□□□□ -1.48
CPSF1-204ENST00000529288 SPRR2GQ9BYE4 73 aa5.81□□□□□ -1.48
CPSF1-204ENST00000529288 KRTAP19-8Q3LI54 63 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms