RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 LINC01549A6NIU2 74 aa1.92□□□□□ -2.1
CD44-219ENST00000525685 A6NN06 94 aa1.92□□□□□ -2.1
CD44-219ENST00000525685 COX6A2Q02221 97 aa1.92□□□□□ -2.1
CD44-219ENST00000525685 Q1T7F1 81 aa1.92□□□□□ -2.1
CD44-219ENST00000525685 CHCHD1Q96BP2 118 aaKnown RBP1.92□□□□□ -2.1
CD44-219ENST00000525685 CYSTM1Q9H1C7 97 aa1.92□□□□□ -2.1
CD44-219ENST00000525685 PKHD1L1Q86WI1 4243 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 VPS13BQ7Z7G8 4022 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 A0A096LNI7 61 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 MYMXA0A1B0GTQ4 84 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 NDUFA1O15239 70 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 SMR3BP02814 79 aaPredicted RBP1.91□□□□□ -2.1
CD44-219ENST00000525685 FXYD2P54710 66 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 CIRBPQ14011 172 aaKnown RBP1.91□□□□□ -2.1
CD44-219ENST00000525685 Q5VSD8 79 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 FAM19A2Q8N3H0 131 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 SPACA4Q8TDM5 124 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 NHP2Q9NX24 153 aaKnown RBP1.91□□□□□ -2.1
CD44-219ENST00000525685 MRPL35Q9NZE8 188 aaKnown RBP1.91□□□□□ -2.1
CD44-219ENST00000525685 C6orf48Q9UBA6 75 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 CDKN2A-AS1Q9UH64 79 aa1.91□□□□□ -2.1
CD44-219ENST00000525685 FAT1Q14517 4588 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 TRAV13-2A0A0B4J235 113 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 C11orf86A6NJI1 115 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 F8VRH5 84 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 H7BZZ5 65 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 SLC25A20O43772 301 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 ZNF22P17026 224 aaPredicted RBP1.9□□□□□ -2.11
CD44-219ENST00000525685 RBM3P98179 157 aaKnown RBP1.9□□□□□ -2.11
CD44-219ENST00000525685 KLKP1Q107X0 134 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 ASB16-AS1Q495Z4 193 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 C2orf82Q6UX34 121 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 UNQ6190/PRO20217Q6UXQ8 127 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 Q8IZM0 81 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 IFI27L1Q96BM0 104 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 TOMM7Q9P0U1 55 aa1.9□□□□□ -2.11
CD44-219ENST00000525685 TRAV12-1A0A0B4J245 112 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 TRBV30A0A0K0K1B3 111 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 LEPROTL1O95214 131 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 P0C880 135 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 KRTAP10-4P60372 401 aaPredicted RBP1.89□□□□□ -2.11
CD44-219ENST00000525685 C9orf116Q5BN46 136 aaPredicted RBP1.89□□□□□ -2.11
CD44-219ENST00000525685 DAND5Q8N907 189 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 COX7B2Q8TF08 81 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 CLEC2BQ92478 149 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 PLAC8Q9NZF1 115 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 LINC00474Q9P2X8 69 aa1.89□□□□□ -2.11
CD44-219ENST00000525685 A0A0B4J2C4 111 aa1.88□□□□□ -2.11
CD44-219ENST00000525685 TRBV10-2A0A0K0K1G8 114 aa1.88□□□□□ -2.11
CD44-219ENST00000525685 A0A1W2PNN7 141 aa1.88□□□□□ -2.11
CD44-219ENST00000525685 RPL37AP61513 92 aaKnown RBP1.88□□□□□ -2.11
CD44-219ENST00000525685 SOSTDC1Q6X4U4 206 aa1.88□□□□□ -2.11
CD44-219ENST00000525685 ADM2Q7Z4H4 148 aa1.88□□□□□ -2.11
CD44-219ENST00000525685 MYCBP2O75592 4640 aa1.87□□□□□ -2.11
CD44-219ENST00000525685 FAT3Q8TDW7 4589 aa1.87□□□□□ -2.11
CD44-219ENST00000525685 LEPROTO15243 131 aa1.87□□□□□ -2.11
CD44-219ENST00000525685 TSPEAR-AS2P59090 65 aa1.87□□□□□ -2.11
CD44-219ENST00000525685 S100A7L2Q5SY68 101 aa1.87□□□□□ -2.11
CD44-219ENST00000525685 ZNF625Q96I27 306 aaPredicted RBP1.87□□□□□ -2.11
CD44-219ENST00000525685 SND1-IT1Q9HBX3 110 aa1.87□□□□□ -2.11
CD44-219ENST00000525685 XAGE1AQ9HD64 81 aa1.87□□□□□ -2.11
CD44-219ENST00000525685 PLNP26678 52 aa1.86□□□□□ -2.11
CD44-219ENST00000525685 ATXN8Q156A1 80 aa1.86□□□□□ -2.11
CD44-219ENST00000525685 Q6JHZ5 121 aa1.86□□□□□ -2.11
CD44-219ENST00000525685 CYP4F30PQ9H0H9 118 aa1.86□□□□□ -2.11
CD44-219ENST00000525685 TRAV7A0A075B6U4 112 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 LOC107984156A0A0G2JMH3 177 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 TEX49A0A1B0GTD5 131 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 SFTA2Q6UW10 78 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 ARL17AQ8IVW1 177 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 C20orf197Q8N268 126 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 Q8NDZ9 215 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 NDUFA12Q9UI09 145 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 PSORS1C2Q9UIG4 136 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 C22orf24Q9Y442 160 aa1.85□□□□□ -2.11
CD44-219ENST00000525685 IGKV2D-26A0A0A0MRZ7 120 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 TRBV10-3A0A0K0K1G6 114 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 HRES1P13985 223 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 LINC00158P58513 81 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 COX17Q14061 63 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 C1orf137Q5JT78 98 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 ATP5EP2Q5VTU8 51 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 TTTY13Q9BZ97 58 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 PRO1854Q9UHT4 67 aa1.84□□□□□ -2.11
CD44-219ENST00000525685 UBR4Q5T4S7 5183 aa1.84□□□□□ -2.12
CD44-219ENST00000525685 ZNF815PA8K554 130 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 HCG22E2RYF7 251 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 F8WEM9 126 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 K7ERS5 55 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 NCR3O14931 201 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 ERC2-IT1O76042 136 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 FAM229BQ4G0N7 80 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 SPINK6Q6UWN8 80 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 SMCR5Q8TEV8 140 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 RETNLBQ9BQ08 111 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 R4GN34 69 aa1.83□□□□□ -2.12
CD44-219ENST00000525685 LRP1Q07954 4544 aaKnown RBP1.82□□□□□ -2.12
CD44-219ENST00000525685 TRAV22A0A0B4J277 110 aa1.82□□□□□ -2.12
CD44-219ENST00000525685 hDV103S1A0JD37 113 aa1.82□□□□□ -2.12
CD44-219ENST00000525685 CDC42SE1Q9NRR8 79 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 175.4 ms