RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 A8MWP4 228 aa8.38□□□□□ -1.07
LSM1-203ENST00000520755 J3QR89 54 aa8.38□□□□□ -1.07
LSM1-203ENST00000520755 BPY2O14599 106 aa8.38□□□□□ -1.07
LSM1-203ENST00000520755 A0A1B0GVX0 72 aa8.37□□□□□ -1.07
LSM1-203ENST00000520755 XP32Q5T750 250 aa8.37□□□□□ -1.07
LSM1-203ENST00000520755 NOTCH2NLQ7Z3S9 236 aa8.37□□□□□ -1.07
LSM1-203ENST00000520755 K7EQZ3 153 aa8.36□□□□□ -1.07
LSM1-203ENST00000520755 IGHV6-1A0A0B4J1U7 121 aa8.34□□□□□ -1.07
LSM1-203ENST00000520755 Q8N9L7 120 aa8.34□□□□□ -1.07
LSM1-203ENST00000520755 MUC17Q685J3 4493 aa8.33□□□□□ -1.08
LSM1-203ENST00000520755 RNF213Q63HN8 5207 aa8.33□□□□□ -1.08
LSM1-203ENST00000520755 K7ERU9 68 aa8.33□□□□□ -1.08
LSM1-203ENST00000520755 PRR15Q8IV56 129 aa8.33□□□□□ -1.08
LSM1-203ENST00000520755 KRTAP16-1A8MUX0 517 aa8.32□□□□□ -1.08
LSM1-203ENST00000520755 CXCL6P80162 114 aa8.32□□□□□ -1.08
LSM1-203ENST00000520755 NDUFB1O75438 58 aa8.3□□□□□ -1.08
LSM1-203ENST00000520755 MMP24-AS1A0A0U1RRL7 71 aa8.29□□□□□ -1.08
LSM1-203ENST00000520755 C8orf87E5RJ46 101 aa8.29□□□□□ -1.08
LSM1-203ENST00000520755 LINC00643Q86TS7 51 aa8.29□□□□□ -1.08
LSM1-203ENST00000520755 C8orf17Q9NRJ1 99 aa8.29□□□□□ -1.08
LSM1-203ENST00000520755 LINC00313P59037 77 aa8.28□□□□□ -1.08
LSM1-203ENST00000520755 ATP5EP2Q5VTU8 51 aa8.28□□□□□ -1.08
LSM1-203ENST00000520755 SEC61BP60468 96 aaKnown RBP8.27□□□□□ -1.09
LSM1-203ENST00000520755 RPL37P61927 97 aaKnown RBP8.22□□□□□ -1.09
LSM1-203ENST00000520755 C20orf166-AS1Q96NR2 134 aa8.22□□□□□ -1.09
LSM1-203ENST00000520755 A8MUU9 505 aa8.21□□□□□ -1.1
LSM1-203ENST00000520755 PCOTHQ58A44 107 aa8.2□□□□□ -1.1
LSM1-203ENST00000520755 Q75L30 129 aa8.2□□□□□ -1.1
LSM1-203ENST00000520755 WFDC13Q8IUB5 93 aa8.19□□□□□ -1.1
LSM1-203ENST00000520755 TMEM254Q8TBM7 123 aa8.19□□□□□ -1.1
LSM1-203ENST00000520755 MUC2Q02817 5179 aa8.19□□□□□ -1.1
LSM1-203ENST00000520755 hDV103S1A0JD37 113 aa8.18□□□□□ -1.1
LSM1-203ENST00000520755 HCG22E2RYF7 251 aa8.18□□□□□ -1.1
LSM1-203ENST00000520755 MT-ATP8P03928 68 aa8.17□□□□□ -1.1
LSM1-203ENST00000520755 A0A087WVE0 104 aa8.16□□□□□ -1.1
LSM1-203ENST00000520755 HIST1H4AP62805 103 aaKnown RBP8.16□□□□□ -1.1
LSM1-203ENST00000520755 CASC2Q6XLA1 102 aa8.16□□□□□ -1.1
LSM1-203ENST00000520755 Q8N9P0 234 aaPredicted RBP8.16□□□□□ -1.1
LSM1-203ENST00000520755 MRPL34Q9BQ48 92 aaKnown RBP8.16□□□□□ -1.1
LSM1-203ENST00000520755 ATP11AUNQ6ZP68 121 aa8.13□□□□□ -1.11
LSM1-203ENST00000520755 KRTAP4-1Q9BYQ7 146 aa8.13□□□□□ -1.11
LSM1-203ENST00000520755 IMUPQ9GZP8 106 aa8.06□□□□□ -1.12
LSM1-203ENST00000520755 NDUFS5O43920 106 aa8.05□□□□□ -1.12
LSM1-203ENST00000520755 ZCCHC13Q8WW36 166 aaKnown RBP8.04□□□□□ -1.12
LSM1-203ENST00000520755 A0A0U1RQV1 116 aa8.03□□□□□ -1.12
LSM1-203ENST00000520755 Q5W150 140 aa8.01□□□□□ -1.13
LSM1-203ENST00000520755 FAT4Q6V0I7 4981 aa7.99□□□□□ -1.13
LSM1-203ENST00000520755 FAM236AA0A1B0GUQ0 79 aa7.95□□□□□ -1.14
LSM1-203ENST00000520755 FAM236BA0A1B0GV22 79 aa7.95□□□□□ -1.14
LSM1-203ENST00000520755 OCR1Q9BZK8 76 aa7.94□□□□□ -1.14
LSM1-203ENST00000520755 TP53AIP1Q9HCN2 124 aa7.94□□□□□ -1.14
LSM1-203ENST00000520755 UQCRQO14949 82 aa7.88□□□□□ -1.15
LSM1-203ENST00000520755 TRAV22A0A0B4J277 110 aa7.87□□□□□ -1.15
LSM1-203ENST00000520755 SPINK7P58062 85 aa7.87□□□□□ -1.15
LSM1-203ENST00000520755 SCGB1A1P11684 91 aa7.86□□□□□ -1.15
LSM1-203ENST00000520755 KRTAP19-2Q3LHN2 52 aa7.86□□□□□ -1.15
LSM1-203ENST00000520755 HRES1P13985 223 aa7.85□□□□□ -1.15
LSM1-203ENST00000520755 COX6B2Q6YFQ2 88 aa7.84□□□□□ -1.15
LSM1-203ENST00000520755 IGKV2D-30A0A075B6S6 120 aa7.83□□□□□ -1.16
LSM1-203ENST00000520755 H0Y9P7 68 aa7.83□□□□□ -1.16
LSM1-203ENST00000520755 IGKV2-30P06310 120 aa7.83□□□□□ -1.16
LSM1-203ENST00000520755 LCE2CQ5TA81 110 aa7.83□□□□□ -1.16
LSM1-203ENST00000520755 C7orf65Q6ZTY9 151 aa7.82□□□□□ -1.16
LSM1-203ENST00000520755 ATOX1O00244 68 aa7.81□□□□□ -1.16
LSM1-203ENST00000520755 MPLKIPQ8TAP9 179 aa7.8□□□□□ -1.16
LSM1-203ENST00000520755 LCE2AQ5TA79 106 aaPredicted RBP7.79□□□□□ -1.16
LSM1-203ENST00000520755 TRAV7A0A075B6U4 112 aa7.78□□□□□ -1.16
LSM1-203ENST00000520755 SMIM20Q8N5G0 67 aa7.77□□□□□ -1.17
LSM1-203ENST00000520755 LOC101927531A0A1B0GV80 90 aa7.75□□□□□ -1.17
LSM1-203ENST00000520755 C5orf47Q569G3 176 aa7.75□□□□□ -1.17
LSM1-203ENST00000520755 CYP4F30PQ9H0H9 118 aa7.75□□□□□ -1.17
LSM1-203ENST00000520755 RBM12B-AS1Q9P1G2 102 aa7.75□□□□□ -1.17
LSM1-203ENST00000520755 FAM236DA0A1B0GTK5 79 aa7.74□□□□□ -1.17
LSM1-203ENST00000520755 FAM236CP0DP71 79 aa7.74□□□□□ -1.17
LSM1-203ENST00000520755 LINC00208Q96KT6 92 aa7.74□□□□□ -1.17
LSM1-203ENST00000520755 MP68P56378 58 aa7.73□□□□□ -1.17
LSM1-203ENST00000520755 MT1HP80294 61 aa7.73□□□□□ -1.17
LSM1-203ENST00000520755 C1orf64Q8NEQ6 169 aa7.73□□□□□ -1.17
LSM1-203ENST00000520755 SERP2Q8N6R1 65 aa7.71□□□□□ -1.18
LSM1-203ENST00000520755 H3BPC8 53 aa7.69□□□□□ -1.18
LSM1-203ENST00000520755 KLKP1Q107X0 134 aa7.67□□□□□ -1.18
LSM1-203ENST00000520755 C4orf26Q17RF5 130 aa7.66□□□□□ -1.18
LSM1-203ENST00000520755 FLGP20930 4061 aaPredicted RBP7.66□□□□□ -1.18
LSM1-203ENST00000520755 M0R2T5 61 aa7.65□□□□□ -1.18
LSM1-203ENST00000520755 COX7CP15954 63 aa7.62□□□□□ -1.19
LSM1-203ENST00000520755 C20orf197Q8N268 126 aa7.61□□□□□ -1.19
LSM1-203ENST00000520755 KRTAP3-1Q9BYR8 98 aa7.61□□□□□ -1.19
LSM1-203ENST00000520755 SNURFQ9Y675 71 aa7.61□□□□□ -1.19
LSM1-203ENST00000520755 ANAPC13Q9BS18 74 aa7.6□□□□□ -1.19
LSM1-203ENST00000520755 KRTAP10-6P60371 365 aaPredicted RBP7.53□□□□□ -1.2
LSM1-203ENST00000520755 CYSTM1Q9H1C7 97 aa7.53□□□□□ -1.2
LSM1-203ENST00000520755 H1FX-AS1Q4G0G2 97 aa7.52□□□□□ -1.21
LSM1-203ENST00000520755 CCDC179H3BU77 68 aa7.49□□□□□ -1.21
LSM1-203ENST00000520755 LORP23490 312 aaPredicted RBP7.49□□□□□ -1.21
LSM1-203ENST00000520755 DMAC1Q96GE9 116 aa7.44□□□□□ -1.22
LSM1-203ENST00000520755 A8MUN3 132 aa7.43□□□□□ -1.22
LSM1-203ENST00000520755 H7BZZ5 65 aa7.43□□□□□ -1.22
LSM1-203ENST00000520755 SPANXA2-OT1Q8N9U9 137 aa7.41□□□□□ -1.22
LSM1-203ENST00000520755 S4R3F8 94 aa7.4□□□□□ -1.22
LSM1-203ENST00000520755 LCA10Q71F78 164 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms