RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SPINK6Q6UWN8 80 aa5.37□□□□□ -1.55
LIMCH1-209ENST00000509277 PRR26Q8N8Z3 221 aa5.37□□□□□ -1.55
LIMCH1-209ENST00000509277 LOC101927531A0A1B0GV80 90 aa5.36□□□□□ -1.55
LIMCH1-209ENST00000509277 J3QL48 77 aa5.36□□□□□ -1.55
LIMCH1-209ENST00000509277 DNAH6Q9C0G6 4158 aa5.35□□□□□ -1.55
LIMCH1-209ENST00000509277 LINC00313P59037 77 aa5.35□□□□□ -1.55
LIMCH1-209ENST00000509277 MOBPQ13875 183 aa5.35□□□□□ -1.55
LIMCH1-209ENST00000509277 IGLV1-50A0A075B6I6 118 aa5.35□□□□□ -1.55
LIMCH1-209ENST00000509277 PSORS1C2Q9UIG4 136 aa5.35□□□□□ -1.55
LIMCH1-209ENST00000509277 PKHD1P08F94 4074 aa5.35□□□□□ -1.55
LIMCH1-209ENST00000509277 IGLV9-49A0A0B4J1Y8 123 aa5.35□□□□□ -1.55
LIMCH1-209ENST00000509277 Q9BRP9 147 aa5.34□□□□□ -1.55
LIMCH1-209ENST00000509277 IGHV6-1A0A0B4J1U7 121 aa5.33□□□□□ -1.56
LIMCH1-209ENST00000509277 ANAPC11Q9NYG5 84 aa5.33□□□□□ -1.56
LIMCH1-209ENST00000509277 Q6ZRX8 168 aa5.33□□□□□ -1.56
LIMCH1-209ENST00000509277 DHRS4-AS1Q9P1J3 65 aa5.33□□□□□ -1.56
LIMCH1-209ENST00000509277 CDK2AP2O75956 126 aa5.33□□□□□ -1.56
LIMCH1-209ENST00000509277 DNAH17Q9UFH2 4485 aa5.32□□□□□ -1.56
LIMCH1-209ENST00000509277 IGFL1Q6UW32 110 aa5.32□□□□□ -1.56
LIMCH1-209ENST00000509277 HECTD4Q9Y4D8 3996 aa5.31□□□□□ -1.56
LIMCH1-209ENST00000509277 CDC42SE1Q9NRR8 79 aa5.31□□□□□ -1.56
LIMCH1-209ENST00000509277 CYP4F30PQ9H0H9 118 aa5.3□□□□□ -1.56
LIMCH1-209ENST00000509277 KCNQ1DNQ9H478 68 aa5.3□□□□□ -1.56
LIMCH1-209ENST00000509277 PLAC8Q9NZF1 115 aa5.3□□□□□ -1.56
LIMCH1-209ENST00000509277 ZCCHC13Q8WW36 166 aaKnown RBP5.29□□□□□ -1.56
LIMCH1-209ENST00000509277 A0A1B0GVY2 172 aa5.29□□□□□ -1.56
LIMCH1-209ENST00000509277 PLA2G2DQ9UNK4 145 aa5.29□□□□□ -1.56
LIMCH1-209ENST00000509277 SPINK1P00995 79 aa5.29□□□□□ -1.56
LIMCH1-209ENST00000509277 IGLV5-48A0A075B6I7 105 aa5.28□□□□□ -1.56
LIMCH1-209ENST00000509277 A6NN06 94 aa5.28□□□□□ -1.56
LIMCH1-209ENST00000509277 IGLV5-37A0A075B6J1 123 aa5.27□□□□□ -1.57
LIMCH1-209ENST00000509277 DNAH5Q8TE73 4624 aa5.27□□□□□ -1.57
LIMCH1-209ENST00000509277 FAT2Q9NYQ8 4349 aa5.27□□□□□ -1.57
LIMCH1-209ENST00000509277 DYNC1H1Q14204 4646 aaKnown RBP5.26□□□□□ -1.57
LIMCH1-209ENST00000509277 Q75L30 129 aa5.26□□□□□ -1.57
LIMCH1-209ENST00000509277 LINC01554Q52M75 96 aa5.25□□□□□ -1.57
LIMCH1-209ENST00000509277 LRP1BQ9NZR2 4599 aa5.25□□□□□ -1.57
LIMCH1-209ENST00000509277 ZNF706Q9Y5V0 76 aaPredicted RBP5.25□□□□□ -1.57
LIMCH1-209ENST00000509277 FAM229AH3BQW9 127 aa5.24□□□□□ -1.57
LIMCH1-209ENST00000509277 IGLV7-43P04211 117 aa5.24□□□□□ -1.57
LIMCH1-209ENST00000509277 CRIPTQ9P021 101 aa5.24□□□□□ -1.57
LIMCH1-209ENST00000509277 Q6ZSA8 131 aa5.23□□□□□ -1.57
LIMCH1-209ENST00000509277 PKD1P98161 4303 aa5.23□□□□□ -1.57
LIMCH1-209ENST00000509277 ZNF861PO60384 105 aa5.22□□□□□ -1.57
LIMCH1-209ENST00000509277 CSAG1Q6PB30 78 aa5.22□□□□□ -1.57
LIMCH1-209ENST00000509277 EPPK1P58107 5090 aaKnown RBP5.22□□□□□ -1.57
LIMCH1-209ENST00000509277 KIAA1109Q2LD37 5005 aa5.22□□□□□ -1.57
LIMCH1-209ENST00000509277 FAT1Q14517 4588 aa5.22□□□□□ -1.57
LIMCH1-209ENST00000509277 A0A1B0GU69 56 aa5.21□□□□□ -1.57
LIMCH1-209ENST00000509277 Q5VSD8 79 aa5.21□□□□□ -1.57
LIMCH1-209ENST00000509277 SPRR1AP35321 89 aa5.21□□□□□ -1.58
LIMCH1-209ENST00000509277 KRTAP4-16G5E9R7 235 aaPredicted RBP5.2□□□□□ -1.58
LIMCH1-209ENST00000509277 HRES1P13985 223 aa5.2□□□□□ -1.58
LIMCH1-209ENST00000509277 SPRR4Q96PI1 79 aa5.2□□□□□ -1.58
LIMCH1-209ENST00000509277 A8MWP4 228 aa5.19□□□□□ -1.58
LIMCH1-209ENST00000509277 PLA2G1BP04054 148 aaKnown RBP5.19□□□□□ -1.58
LIMCH1-209ENST00000509277 DNAH8Q96JB1 4490 aa5.18□□□□□ -1.58
LIMCH1-209ENST00000509277 SPANXA2-OT1Q8N9U9 137 aa5.17□□□□□ -1.58
LIMCH1-209ENST00000509277 IGLV7-46A0A075B6I9 117 aa5.16□□□□□ -1.58
LIMCH1-209ENST00000509277 A0A0A0MQY5 61 aa5.16□□□□□ -1.58
LIMCH1-209ENST00000509277 LINC01558Q9Y6Z2 57 aa5.15□□□□□ -1.59
LIMCH1-209ENST00000509277 IGKV2D-30A0A075B6S6 120 aa5.13□□□□□ -1.59
LIMCH1-209ENST00000509277 A0A087X002 238 aa5.13□□□□□ -1.59
LIMCH1-209ENST00000509277 IGKV2-30P06310 120 aa5.13□□□□□ -1.59
LIMCH1-209ENST00000509277 APOBP04114 4563 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-209ENST00000509277 MIR22HGQ0VDD5 57 aa5.13□□□□□ -1.59
LIMCH1-209ENST00000509277 VPS13BQ7Z7G8 4022 aa5.13□□□□□ -1.59
LIMCH1-209ENST00000509277 MMP24-AS1A0A0U1RRL7 71 aa5.12□□□□□ -1.59
LIMCH1-209ENST00000509277 KRTAP29-1A8MX34 341 aaPredicted RBP5.12□□□□□ -1.59
LIMCH1-209ENST00000509277 KRTAP13-1Q8IUC0 172 aa5.12□□□□□ -1.59
LIMCH1-209ENST00000509277 TYMSOSQ8TAI1 123 aa5.12□□□□□ -1.59
LIMCH1-209ENST00000509277 H3BPC8 53 aa5.11□□□□□ -1.59
LIMCH1-209ENST00000509277 NOTCH2NLQ7Z3S9 236 aa5.11□□□□□ -1.59
LIMCH1-209ENST00000509277 C8orf17Q9NRJ1 99 aa5.1□□□□□ -1.59
LIMCH1-209ENST00000509277 A0A1B0GW54 56 aa5.1□□□□□ -1.59
LIMCH1-209ENST00000509277 KRTAP4-5Q9BYR2 181 aa5.09□□□□□ -1.59
LIMCH1-209ENST00000509277 KRTAP17-1Q9BYP8 105 aa5.09□□□□□ -1.59
LIMCH1-209ENST00000509277 ACYP2P14621 99 aa5.09□□□□□ -1.6
LIMCH1-209ENST00000509277 Q8N1X5 172 aa5.07□□□□□ -1.6
LIMCH1-209ENST00000509277 UQCR11O14957 56 aa5.07□□□□□ -1.6
LIMCH1-209ENST00000509277 MRPL34Q9BQ48 92 aaKnown RBP5.07□□□□□ -1.6
LIMCH1-209ENST00000509277 LINC00472Q9H8W2 130 aa5.07□□□□□ -1.6
LIMCH1-209ENST00000509277 RYR1P21817 5038 aa5.06□□□□□ -1.6
LIMCH1-209ENST00000509277 SSBP3-AS1Q7Z2R9 100 aa5.06□□□□□ -1.6
LIMCH1-209ENST00000509277 KRTAP13-2Q52LG2 175 aa5.05□□□□□ -1.6
LIMCH1-209ENST00000509277 TP53AIP1Q9HCN2 124 aa5.05□□□□□ -1.6
LIMCH1-209ENST00000509277 HSPG2P98160 4391 aa5.04□□□□□ -1.6
LIMCH1-209ENST00000509277 Q5W150 140 aa5.04□□□□□ -1.6
LIMCH1-209ENST00000509277 KRTAP1-4P0C5Y4 121 aa5.03□□□□□ -1.6
LIMCH1-209ENST00000509277 MYCBP2O75592 4640 aa5.03□□□□□ -1.6
LIMCH1-209ENST00000509277 LRP1Q07954 4544 aaKnown RBP5.03□□□□□ -1.6
LIMCH1-209ENST00000509277 A0A1B0GVX0 72 aa5.02□□□□□ -1.61
LIMCH1-209ENST00000509277 LINC00304Q8N9R0 145 aa5.02□□□□□ -1.61
LIMCH1-209ENST00000509277 SPRR1BP22528 89 aa5□□□□□ -1.61
LIMCH1-209ENST00000509277 KRTAP10-4P60372 401 aaPredicted RBP5□□□□□ -1.61
LIMCH1-209ENST00000509277 LINC00483Q53H64 154 aa5□□□□□ -1.61
LIMCH1-209ENST00000509277 SPINT4Q6UDR6 99 aa4.99□□□□□ -1.61
LIMCH1-209ENST00000509277 BIRC6Q9NR09 4857 aa4.97□□□□□ -1.61
LIMCH1-209ENST00000509277 C9orf92A6NGG3 77 aa4.93□□□□□ -1.62
LIMCH1-209ENST00000509277 LCE2BO14633 110 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 167.9 ms