RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 TAX1BP3O14907 124 aa9.93□□□□□ -0.82
USP40-217ENST00000496298 RBM3P98179 157 aaKnown RBP9.91□□□□□ -0.82
USP40-217ENST00000496298 DEFB116Q30KQ4 102 aa9.91□□□□□ -0.82
USP40-217ENST00000496298 NOTCH2NLQ7Z3S9 236 aa9.91□□□□□ -0.82
USP40-217ENST00000496298 C9orf118A6NHY6 69 aa9.9□□□□□ -0.82
USP40-217ENST00000496298 BAALC-AS2P0C853 105 aa9.88□□□□□ -0.83
USP40-217ENST00000496298 DSCR8Q96T75 97 aa9.88□□□□□ -0.83
USP40-217ENST00000496298 TRBV20-1A0A075B6N2 111 aa9.87□□□□□ -0.83
USP40-217ENST00000496298 IGHV6-1A0A0B4J1U7 121 aa9.85□□□□□ -0.83
USP40-217ENST00000496298 VPS25Q9BRG1 176 aa9.85□□□□□ -0.83
USP40-217ENST00000496298 C21orf62-AS1Q17RA5 79 aa9.84□□□□□ -0.83
USP40-217ENST00000496298 C9JAW5 83 aa9.83□□□□□ -0.84
USP40-217ENST00000496298 LYRM7Q5U5X0 104 aa9.83□□□□□ -0.84
USP40-217ENST00000496298 GTF2H5Q6ZYL4 71 aa9.83□□□□□ -0.84
USP40-217ENST00000496298 A0A1B0GVX0 72 aa9.82□□□□□ -0.84
USP40-217ENST00000496298 A0A1W2PPM0 123 aa9.81□□□□□ -0.84
USP40-217ENST00000496298 C8orf87E5RJ46 101 aa9.81□□□□□ -0.84
USP40-217ENST00000496298 Q6ZQT0 140 aa9.8□□□□□ -0.84
USP40-217ENST00000496298 J3KT08 172 aa9.79□□□□□ -0.84
USP40-217ENST00000496298 ATXN8Q156A1 80 aa9.79□□□□□ -0.84
USP40-217ENST00000496298 MPLKIPQ8TAP9 179 aa9.79□□□□□ -0.84
USP40-217ENST00000496298 A0A1B0GW54 56 aa9.76□□□□□ -0.85
USP40-217ENST00000496298 JMJD7-PLA2G4BH0Y9G9 81 aa9.76□□□□□ -0.85
USP40-217ENST00000496298 HRES1P13985 223 aa9.76□□□□□ -0.85
USP40-217ENST00000496298 NAA38Q9BRA0 125 aaKnown RBP9.76□□□□□ -0.85
USP40-217ENST00000496298 K7EP34 96 aa9.75□□□□□ -0.85
USP40-217ENST00000496298 KRTAP9-8Q9BYQ0 159 aa9.75□□□□□ -0.85
USP40-217ENST00000496298 LOC110117498A0A087WWA1 95 aa9.74□□□□□ -0.85
USP40-217ENST00000496298 SPCS1Q9Y6A9 102 aa9.74□□□□□ -0.85
USP40-217ENST00000496298 PDE6GP18545 87 aa9.71□□□□□ -0.86
USP40-217ENST00000496298 RBM12B-AS1Q9P1G2 102 aa9.7□□□□□ -0.86
USP40-217ENST00000496298 FAM236DA0A1B0GTK5 79 aa9.68□□□□□ -0.86
USP40-217ENST00000496298 NDUFB1O75438 58 aa9.68□□□□□ -0.86
USP40-217ENST00000496298 FAM236CP0DP71 79 aa9.68□□□□□ -0.86
USP40-217ENST00000496298 Q8N9P0 234 aaPredicted RBP9.68□□□□□ -0.86
USP40-217ENST00000496298 ZCCHC13Q8WW36 166 aaKnown RBP9.68□□□□□ -0.86
USP40-217ENST00000496298 A8MWP4 228 aa9.65□□□□□ -0.86
USP40-217ENST00000496298 F8W1H4 67 aa9.64□□□□□ -0.87
USP40-217ENST00000496298 C14orf132Q9NPU4 83 aa9.64□□□□□ -0.87
USP40-217ENST00000496298 C8orf17Q9NRJ1 99 aa9.63□□□□□ -0.87
USP40-217ENST00000496298 IGKV3D-7A0A0C4DH55 119 aa9.62□□□□□ -0.87
USP40-217ENST00000496298 SPINK7P58062 85 aa9.6□□□□□ -0.87
USP40-217ENST00000496298 USH2AO75445 5202 aa9.59□□□□□ -0.87
USP40-217ENST00000496298 MT2AP02795 61 aa9.58□□□□□ -0.88
USP40-217ENST00000496298 KRTAP4-8Q9BYQ9 185 aa9.57□□□□□ -0.88
USP40-217ENST00000496298 NREPQ16612 68 aa9.56□□□□□ -0.88
USP40-217ENST00000496298 PRR15Q8IV56 129 aa9.56□□□□□ -0.88
USP40-217ENST00000496298 MTURNQ8N3F0 131 aa9.56□□□□□ -0.88
USP40-217ENST00000496298 Q6ZVQ6 151 aa9.55□□□□□ -0.88
USP40-217ENST00000496298 H3BT86 120 aa9.53□□□□□ -0.88
USP40-217ENST00000496298 PRO0461Q9UI25 63 aa9.52□□□□□ -0.89
USP40-217ENST00000496298 MT1FP04733 61 aa9.5□□□□□ -0.89
USP40-217ENST00000496298 SSPOA2VEC9 5147 aa9.49□□□□□ -0.89
USP40-217ENST00000496298 MMP24-AS1A0A0U1RRL7 71 aa9.49□□□□□ -0.89
USP40-217ENST00000496298 K7ERU9 68 aa9.48□□□□□ -0.89
USP40-217ENST00000496298 TMEM254Q8TBM7 123 aa9.48□□□□□ -0.89
USP40-217ENST00000496298 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.47□□□□□ -0.89
USP40-217ENST00000496298 J3QR89 54 aa9.47□□□□□ -0.89
USP40-217ENST00000496298 MRPL34Q9BQ48 92 aaKnown RBP9.46□□□□□ -0.9
USP40-217ENST00000496298 KRTAP9-3Q9BYQ3 159 aa9.45□□□□□ -0.9
USP40-217ENST00000496298 WFDC13Q8IUB5 93 aa9.44□□□□□ -0.9
USP40-217ENST00000496298 K7EQZ3 153 aa9.43□□□□□ -0.9
USP40-217ENST00000496298 KRTAP10-10P60014 251 aa9.43□□□□□ -0.9
USP40-217ENST00000496298 ETDBQ3ZM63 59 aa9.42□□□□□ -0.9
USP40-217ENST00000496298 hDV103S1A0JD37 113 aa9.41□□□□□ -0.9
USP40-217ENST00000496298 BPY2O14599 106 aa9.37□□□□□ -0.91
USP40-217ENST00000496298 NDUFS5O43920 106 aa9.32□□□□□ -0.92
USP40-217ENST00000496298 FCGBPQ9Y6R7 5405 aaPredicted RBP9.31□□□□□ -0.92
USP40-217ENST00000496298 Q5W150 140 aa9.3□□□□□ -0.92
USP40-217ENST00000496298 H1FX-AS1Q4G0G2 97 aa9.28□□□□□ -0.92
USP40-217ENST00000496298 CASC2Q6XLA1 102 aa9.26□□□□□ -0.93
USP40-217ENST00000496298 Q8N9L7 120 aa9.26□□□□□ -0.93
USP40-217ENST00000496298 C7orf65Q6ZTY9 151 aa9.24□□□□□ -0.93
USP40-217ENST00000496298 KRTAP19-1Q8IUB9 90 aa9.24□□□□□ -0.93
USP40-217ENST00000496298 FAM240AA0A1B0GVK7 77 aa9.23□□□□□ -0.93
USP40-217ENST00000496298 ACYP1P07311 99 aa9.23□□□□□ -0.93
USP40-217ENST00000496298 IGKV2D-30A0A075B6S6 120 aa9.22□□□□□ -0.93
USP40-217ENST00000496298 IGKV2-30P06310 120 aa9.22□□□□□ -0.93
USP40-217ENST00000496298 LINC00846Q9NV44 126 aa9.21□□□□□ -0.94
USP40-217ENST00000496298 HCG22E2RYF7 251 aa9.2□□□□□ -0.94
USP40-217ENST00000496298 CXCL6P80162 114 aa9.18□□□□□ -0.94
USP40-217ENST00000496298 UBL5Q9BZL1 73 aa9.17□□□□□ -0.94
USP40-217ENST00000496298 KRTAP9-7A8MTY7 169 aa9.16□□□□□ -0.94
USP40-217ENST00000496298 C4orf26Q17RF5 130 aa9.1□□□□□ -0.95
USP40-217ENST00000496298 KRTAP19-6Q3LI70 58 aa9.1□□□□□ -0.95
USP40-217ENST00000496298 H3BS24 57 aa9.09□□□□□ -0.95
USP40-217ENST00000496298 LCE3BQ5TA77 95 aa9.03□□□□□ -0.96
USP40-217ENST00000496298 LINC00643Q86TS7 51 aa9.03□□□□□ -0.96
USP40-217ENST00000496298 KRTAP3-1Q9BYR8 98 aa9.01□□□□□ -0.97
USP40-217ENST00000496298 TP53AIP1Q9HCN2 124 aa9□□□□□ -0.97
USP40-217ENST00000496298 SCGB1A1P11684 91 aa8.99□□□□□ -0.97
USP40-217ENST00000496298 IMUPQ9GZP8 106 aa8.97□□□□□ -0.97
USP40-217ENST00000496298 KRTAP9-9Q9BYP9 154 aa8.96□□□□□ -0.98
USP40-217ENST00000496298 KRTAP9-4Q9BYQ2 154 aa8.96□□□□□ -0.98
USP40-217ENST00000496298 MT-ATP8P03928 68 aa8.95□□□□□ -0.98
USP40-217ENST00000496298 ATP5EP2Q5VTU8 51 aa8.95□□□□□ -0.98
USP40-217ENST00000496298 C1orf64Q8NEQ6 169 aa8.93□□□□□ -0.98
USP40-217ENST00000496298 KRTAP4-12Q9BQ66 201 aa8.93□□□□□ -0.98
USP40-217ENST00000496298 MACF1Q9UPN3 7388 aaKnown RBP8.93□□□□□ -0.98
USP40-217ENST00000496298 C5orf47Q569G3 176 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms