RNA–Protein interactions for RNA: ENST00000495835.1

HLA-C-209, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,073 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-209ENST00000495835 A0A1B0GVX0 72 aa12.33□□□□□ -0.44
HLA-C-209ENST00000495835 A0A1B0GW54 56 aa12.32□□□□□ -0.44
HLA-C-209ENST00000495835 JMJD7-PLA2G4BH0Y9G9 81 aa12.32□□□□□ -0.44
HLA-C-209ENST00000495835 Q6ZQT0 140 aa12.3□□□□□ -0.44
HLA-C-209ENST00000495835 SMIM6P0DI80 62 aa12.27□□□□□ -0.45
HLA-C-209ENST00000495835 PDE6GP18545 87 aa12.26□□□□□ -0.45
HLA-C-209ENST00000495835 LOC110117498A0A087WWA1 95 aa12.24□□□□□ -0.45
HLA-C-209ENST00000495835 NDUFB1O75438 58 aa12.23□□□□□ -0.45
HLA-C-209ENST00000495835 LYRM7Q5U5X0 104 aa12.23□□□□□ -0.45
HLA-C-209ENST00000495835 RBM12B-AS1Q9P1G2 102 aa12.23□□□□□ -0.45
HLA-C-209ENST00000495835 MPLKIPQ8TAP9 179 aa12.22□□□□□ -0.45
HLA-C-209ENST00000495835 NAA38Q9BRA0 125 aaKnown RBP12.2□□□□□ -0.46
HLA-C-209ENST00000495835 FAM236DA0A1B0GTK5 79 aa12.19□□□□□ -0.46
HLA-C-209ENST00000495835 FAM236CP0DP71 79 aa12.19□□□□□ -0.46
HLA-C-209ENST00000495835 HRES1P13985 223 aa12.19□□□□□ -0.46
HLA-C-209ENST00000495835 ZCCHC13Q8WW36 166 aaKnown RBP12.15□□□□□ -0.46
HLA-C-209ENST00000495835 TSTD3H0UI37 97 aa12.14□□□□□ -0.47
HLA-C-209ENST00000495835 Q8N9P0 234 aaPredicted RBP12.14□□□□□ -0.47
HLA-C-209ENST00000495835 KRTAP9-8Q9BYQ0 159 aa12.14□□□□□ -0.47
HLA-C-209ENST00000495835 A8MWP4 228 aa12.13□□□□□ -0.47
HLA-C-209ENST00000495835 MTURNQ8N3F0 131 aa12.1□□□□□ -0.47
HLA-C-209ENST00000495835 C14orf132Q9NPU4 83 aa12.1□□□□□ -0.47
HLA-C-209ENST00000495835 C8orf17Q9NRJ1 99 aa12.09□□□□□ -0.47
HLA-C-209ENST00000495835 IGKV3D-7A0A0C4DH55 119 aa12.05□□□□□ -0.48
HLA-C-209ENST00000495835 NREPQ16612 68 aa12.05□□□□□ -0.48
HLA-C-209ENST00000495835 SPINK7P58062 85 aa12.04□□□□□ -0.48
HLA-C-209ENST00000495835 BATFQ16520 125 aa12.02□□□□□ -0.49
HLA-C-209ENST00000495835 PRR15Q8IV56 129 aa12.01□□□□□ -0.49
HLA-C-209ENST00000495835 C9orf118A6NHY6 69 aa12□□□□□ -0.49
HLA-C-209ENST00000495835 H3BT86 120 aa12□□□□□ -0.49
HLA-C-209ENST00000495835 Q6ZVQ6 151 aa12□□□□□ -0.49
HLA-C-209ENST00000495835 A0A1W2PPM0 123 aa11.94□□□□□ -0.5
HLA-C-209ENST00000495835 MT2AP02795 61 aa11.94□□□□□ -0.5
HLA-C-209ENST00000495835 TAX1BP3O14907 124 aa11.92□□□□□ -0.5
HLA-C-209ENST00000495835 TMEM254Q8TBM7 123 aa11.92□□□□□ -0.5
HLA-C-209ENST00000495835 MRPL34Q9BQ48 92 aaKnown RBP11.9□□□□□ -0.5
HLA-C-209ENST00000495835 MMP24-AS1A0A0U1RRL7 71 aa11.89□□□□□ -0.51
HLA-C-209ENST00000495835 LOC105371267A0A1B0GV96 52 aa11.89□□□□□ -0.51
HLA-C-209ENST00000495835 USH2AO75445 5202 aa11.85□□□□□ -0.51
HLA-C-209ENST00000495835 hDV103S1A0JD37 113 aa11.84□□□□□ -0.51
HLA-C-209ENST00000495835 WFDC13Q8IUB5 93 aa11.84□□□□□ -0.51
HLA-C-209ENST00000495835 K7EQZ3 153 aa11.83□□□□□ -0.52
HLA-C-209ENST00000495835 MT1FP04733 61 aa11.82□□□□□ -0.52
HLA-C-209ENST00000495835 KRTAP10-10P60014 251 aa11.81□□□□□ -0.52
HLA-C-209ENST00000495835 BPY2O14599 106 aa11.8□□□□□ -0.52
HLA-C-209ENST00000495835 SSPOA2VEC9 5147 aa11.77□□□□□ -0.52
HLA-C-209ENST00000495835 KRTAP9-3Q9BYQ3 159 aa11.76□□□□□ -0.53
HLA-C-209ENST00000495835 SPCS1Q9Y6A9 102 aa11.75□□□□□ -0.53
HLA-C-209ENST00000495835 NDUFS5O43920 106 aa11.74□□□□□ -0.53
HLA-C-209ENST00000495835 LCE2BO14633 110 aa11.68□□□□□ -0.54
HLA-C-209ENST00000495835 SMCPP49901 116 aaPredicted RBP11.66□□□□□ -0.54
HLA-C-209ENST00000495835 H1FX-AS1Q4G0G2 97 aa11.65□□□□□ -0.54
HLA-C-209ENST00000495835 COL5A1-AS1Q5SY13 56 aa11.64□□□□□ -0.55
HLA-C-209ENST00000495835 CASC2Q6XLA1 102 aa11.64□□□□□ -0.55
HLA-C-209ENST00000495835 C7orf65Q6ZTY9 151 aa11.63□□□□□ -0.55
HLA-C-209ENST00000495835 Q5W150 140 aa11.61□□□□□ -0.55
HLA-C-209ENST00000495835 IGKV2D-30A0A075B6S6 120 aa11.59□□□□□ -0.55
HLA-C-209ENST00000495835 IGKV2-30P06310 120 aa11.59□□□□□ -0.55
HLA-C-209ENST00000495835 Q8N9L7 120 aa11.59□□□□□ -0.55
HLA-C-209ENST00000495835 UBL5Q9BZL1 73 aa11.59□□□□□ -0.55
HLA-C-209ENST00000495835 HCG22E2RYF7 251 aa11.57□□□□□ -0.56
HLA-C-209ENST00000495835 CXCL6P80162 114 aa11.57□□□□□ -0.56
HLA-C-209ENST00000495835 PRO0461Q9UI25 63 aa11.57□□□□□ -0.56
HLA-C-209ENST00000495835 LINC00846Q9NV44 126 aa11.55□□□□□ -0.56
HLA-C-209ENST00000495835 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.54□□□□□ -0.56
HLA-C-209ENST00000495835 K7EP34 96 aa11.54□□□□□ -0.56
HLA-C-209ENST00000495835 KRTAP19-1Q8IUB9 90 aa11.51□□□□□ -0.57
HLA-C-209ENST00000495835 FCGBPQ9Y6R7 5405 aaPredicted RBP11.51□□□□□ -0.57
HLA-C-209ENST00000495835 GTF2H5Q6ZYL4 71 aa11.43□□□□□ -0.58
HLA-C-209ENST00000495835 KRTAP9-7A8MTY7 169 aa11.42□□□□□ -0.58
HLA-C-209ENST00000495835 F8W1H4 67 aa11.4□□□□□ -0.58
HLA-C-209ENST00000495835 C4orf26Q17RF5 130 aa11.4□□□□□ -0.58
HLA-C-209ENST00000495835 KRTAP19-6Q3LI70 58 aa11.36□□□□□ -0.59
HLA-C-209ENST00000495835 TP53AIP1Q9HCN2 124 aa11.36□□□□□ -0.59
HLA-C-209ENST00000495835 ETDBQ3ZM63 59 aa11.28□□□□□ -0.6
HLA-C-209ENST00000495835 KRTAP3-1Q9BYR8 98 aa11.24□□□□□ -0.61
HLA-C-209ENST00000495835 C1orf64Q8NEQ6 169 aa11.22□□□□□ -0.61
HLA-C-209ENST00000495835 S4R3F8 94 aa11.19□□□□□ -0.62
HLA-C-209ENST00000495835 PCP4L1A6NKN8 68 aa11.18□□□□□ -0.62
HLA-C-209ENST00000495835 C5orf47Q569G3 176 aa11.18□□□□□ -0.62
HLA-C-209ENST00000495835 ACYP1P07311 99 aa11.16□□□□□ -0.62
HLA-C-209ENST00000495835 CSAG1Q6PB30 78 aa11.16□□□□□ -0.62
HLA-C-209ENST00000495835 MACF1Q9UPN3 7388 aaKnown RBP11.14□□□□□ -0.63
HLA-C-209ENST00000495835 LCA10Q71F78 164 aa11.1□□□□□ -0.63
HLA-C-209ENST00000495835 FAM236AA0A1B0GUQ0 79 aa11.08□□□□□ -0.64
HLA-C-209ENST00000495835 FAM236BA0A1B0GV22 79 aa11.08□□□□□ -0.64
HLA-C-209ENST00000495835 CYP4F30PQ9H0H9 118 aa11.08□□□□□ -0.64
HLA-C-209ENST00000495835 FAM240AA0A1B0GVK7 77 aa11.06□□□□□ -0.64
HLA-C-209ENST00000495835 TRAV22A0A0B4J277 110 aa11.04□□□□□ -0.64
HLA-C-209ENST00000495835 ATP5EP2Q5VTU8 51 aa11.04□□□□□ -0.64
HLA-C-209ENST00000495835 LOC101927531A0A1B0GV80 90 aa11.03□□□□□ -0.64
HLA-C-209ENST00000495835 SYNE2Q8WXH0 6885 aaKnown RBP10.99□□□□□ -0.65
HLA-C-209ENST00000495835 SPRR2GQ9BYE4 73 aa10.96□□□□□ -0.65
HLA-C-209ENST00000495835 KRTAP3-3Q9BYR6 98 aa10.94□□□□□ -0.66
HLA-C-209ENST00000495835 UQCRQO14949 82 aa10.93□□□□□ -0.66
HLA-C-209ENST00000495835 HIST1H4AP62805 103 aaKnown RBP10.92□□□□□ -0.66
HLA-C-209ENST00000495835 ATOX1O00244 68 aa10.91□□□□□ -0.66
HLA-C-209ENST00000495835 KLKP1Q107X0 134 aa10.9□□□□□ -0.66
HLA-C-209ENST00000495835 KRTAP19-8Q3LI54 63 aa10.89□□□□□ -0.67
HLA-C-209ENST00000495835 Q5VV11 94 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms