RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 BPY2O14599 106 aa8.65□□□□□ -1.02
HPS4-216ENST00000493455 NDUFB1O75438 58 aa8.63□□□□□ -1.03
HPS4-216ENST00000493455 XP32Q5T750 250 aa8.63□□□□□ -1.03
HPS4-216ENST00000493455 A0A1B0GVX0 72 aa8.62□□□□□ -1.03
HPS4-216ENST00000493455 LRP2P98164 4655 aa8.62□□□□□ -1.03
HPS4-216ENST00000493455 A8MWP4 228 aa8.61□□□□□ -1.03
HPS4-216ENST00000493455 ACYP1P07311 99 aa8.6□□□□□ -1.03
HPS4-216ENST00000493455 LINC00313P59037 77 aa8.6□□□□□ -1.03
HPS4-216ENST00000493455 IGKV3D-7A0A0C4DH55 119 aa8.59□□□□□ -1.03
HPS4-216ENST00000493455 NOTCH2NLQ7Z3S9 236 aa8.59□□□□□ -1.03
HPS4-216ENST00000493455 FAM240AA0A1B0GVK7 77 aa8.58□□□□□ -1.04
HPS4-216ENST00000493455 J3QR89 54 aa8.58□□□□□ -1.04
HPS4-216ENST00000493455 K7EQZ3 153 aa8.58□□□□□ -1.04
HPS4-216ENST00000493455 Q8N9L7 120 aa8.57□□□□□ -1.04
HPS4-216ENST00000493455 C8orf87E5RJ46 101 aa8.55□□□□□ -1.04
HPS4-216ENST00000493455 PRR15Q8IV56 129 aa8.55□□□□□ -1.04
HPS4-216ENST00000493455 C8orf17Q9NRJ1 99 aa8.54□□□□□ -1.04
HPS4-216ENST00000493455 KRTAP16-1A8MUX0 517 aa8.49□□□□□ -1.05
HPS4-216ENST00000493455 RPL37P61927 97 aaKnown RBP8.49□□□□□ -1.05
HPS4-216ENST00000493455 MMP24-AS1A0A0U1RRL7 71 aa8.48□□□□□ -1.05
HPS4-216ENST00000493455 SEC61BP60468 96 aaKnown RBP8.48□□□□□ -1.05
HPS4-216ENST00000493455 CXCL6P80162 114 aa8.48□□□□□ -1.05
HPS4-216ENST00000493455 WFDC13Q8IUB5 93 aa8.48□□□□□ -1.05
HPS4-216ENST00000493455 PCOTHQ58A44 107 aa8.47□□□□□ -1.05
HPS4-216ENST00000493455 K7ERU9 68 aa8.46□□□□□ -1.06
HPS4-216ENST00000493455 Q75L30 129 aa8.45□□□□□ -1.06
HPS4-216ENST00000493455 C20orf166-AS1Q96NR2 134 aa8.45□□□□□ -1.06
HPS4-216ENST00000493455 UBR4Q5T4S7 5183 aa8.44□□□□□ -1.06
HPS4-216ENST00000493455 hDV103S1A0JD37 113 aa8.44□□□□□ -1.06
HPS4-216ENST00000493455 A8MUU9 505 aa8.44□□□□□ -1.06
HPS4-216ENST00000493455 ATP5EP2Q5VTU8 51 aa8.44□□□□□ -1.06
HPS4-216ENST00000493455 LINC00643Q86TS7 51 aa8.44□□□□□ -1.06
HPS4-216ENST00000493455 HIST1H4AP62805 103 aaKnown RBP8.43□□□□□ -1.06
HPS4-216ENST00000493455 ATP11AUNQ6ZP68 121 aa8.43□□□□□ -1.06
HPS4-216ENST00000493455 NDUFS5O43920 106 aa8.42□□□□□ -1.06
HPS4-216ENST00000493455 CASC2Q6XLA1 102 aa8.42□□□□□ -1.06
HPS4-216ENST00000493455 TMEM254Q8TBM7 123 aa8.42□□□□□ -1.06
HPS4-216ENST00000493455 MRPL34Q9BQ48 92 aaKnown RBP8.41□□□□□ -1.06
HPS4-216ENST00000493455 HCG22E2RYF7 251 aa8.4□□□□□ -1.06
HPS4-216ENST00000493455 MUC17Q685J3 4493 aa8.38□□□□□ -1.07
HPS4-216ENST00000493455 RNF213Q63HN8 5207 aa8.36□□□□□ -1.07
HPS4-216ENST00000493455 Q8N9P0 234 aaPredicted RBP8.35□□□□□ -1.07
HPS4-216ENST00000493455 A0A087WVE0 104 aa8.34□□□□□ -1.07
HPS4-216ENST00000493455 KRTAP4-1Q9BYQ7 146 aa8.32□□□□□ -1.08
HPS4-216ENST00000493455 ZCCHC13Q8WW36 166 aaKnown RBP8.31□□□□□ -1.08
HPS4-216ENST00000493455 MT-ATP8P03928 68 aa8.28□□□□□ -1.08
HPS4-216ENST00000493455 Q5W150 140 aa8.2□□□□□ -1.1
HPS4-216ENST00000493455 TP53AIP1Q9HCN2 124 aa8.18□□□□□ -1.1
HPS4-216ENST00000493455 IGKV2D-30A0A075B6S6 120 aa8.15□□□□□ -1.1
HPS4-216ENST00000493455 IGKV2-30P06310 120 aa8.15□□□□□ -1.1
HPS4-216ENST00000493455 SCGB1A1P11684 91 aa8.15□□□□□ -1.1
HPS4-216ENST00000493455 SPINK7P58062 85 aa8.15□□□□□ -1.1
HPS4-216ENST00000493455 IMUPQ9GZP8 106 aa8.15□□□□□ -1.1
HPS4-216ENST00000493455 MUC2Q02817 5179 aa8.15□□□□□ -1.11
HPS4-216ENST00000493455 A0A0U1RQV1 116 aa8.12□□□□□ -1.11
HPS4-216ENST00000493455 FAM236AA0A1B0GUQ0 79 aa8.11□□□□□ -1.11
HPS4-216ENST00000493455 FAM236BA0A1B0GV22 79 aa8.11□□□□□ -1.11
HPS4-216ENST00000493455 COX6B2Q6YFQ2 88 aa8.1□□□□□ -1.11
HPS4-216ENST00000493455 TRAV22A0A0B4J277 110 aa8.09□□□□□ -1.11
HPS4-216ENST00000493455 UQCRQO14949 82 aa8.09□□□□□ -1.11
HPS4-216ENST00000493455 C7orf65Q6ZTY9 151 aa8.09□□□□□ -1.11
HPS4-216ENST00000493455 H0Y9P7 68 aa8.06□□□□□ -1.12
HPS4-216ENST00000493455 HRES1P13985 223 aa8.06□□□□□ -1.12
HPS4-216ENST00000493455 FAM236DA0A1B0GTK5 79 aa8.05□□□□□ -1.12
HPS4-216ENST00000493455 FAM236CP0DP71 79 aa8.05□□□□□ -1.12
HPS4-216ENST00000493455 OCR1Q9BZK8 76 aa8.05□□□□□ -1.12
HPS4-216ENST00000493455 RBM12B-AS1Q9P1G2 102 aa8.03□□□□□ -1.12
HPS4-216ENST00000493455 KRTAP19-2Q3LHN2 52 aa8□□□□□ -1.13
HPS4-216ENST00000493455 ATOX1O00244 68 aa7.99□□□□□ -1.13
HPS4-216ENST00000493455 MP68P56378 58 aa7.99□□□□□ -1.13
HPS4-216ENST00000493455 FAT4Q6V0I7 4981 aa7.99□□□□□ -1.13
HPS4-216ENST00000493455 LINC00208Q96KT6 92 aa7.98□□□□□ -1.13
HPS4-216ENST00000493455 LOC101927531A0A1B0GV80 90 aa7.97□□□□□ -1.13
HPS4-216ENST00000493455 C1orf64Q8NEQ6 169 aa7.96□□□□□ -1.14
HPS4-216ENST00000493455 LCE2BO14633 110 aa7.95□□□□□ -1.14
HPS4-216ENST00000493455 C5orf47Q569G3 176 aa7.95□□□□□ -1.14
HPS4-216ENST00000493455 LCE2CQ5TA81 110 aa7.95□□□□□ -1.14
HPS4-216ENST00000493455 MPLKIPQ8TAP9 179 aa7.95□□□□□ -1.14
HPS4-216ENST00000493455 CYP4F30PQ9H0H9 118 aa7.95□□□□□ -1.14
HPS4-216ENST00000493455 C4orf26Q17RF5 130 aa7.94□□□□□ -1.14
HPS4-216ENST00000493455 SMIM20Q8N5G0 67 aa7.94□□□□□ -1.14
HPS4-216ENST00000493455 TRAV7A0A075B6U4 112 aa7.93□□□□□ -1.14
HPS4-216ENST00000493455 MT1HP80294 61 aa7.87□□□□□ -1.15
HPS4-216ENST00000493455 H3BPC8 53 aa7.86□□□□□ -1.15
HPS4-216ENST00000493455 M0R2T5 61 aa7.86□□□□□ -1.15
HPS4-216ENST00000493455 KLKP1Q107X0 134 aa7.85□□□□□ -1.15
HPS4-216ENST00000493455 SERP2Q8N6R1 65 aa7.84□□□□□ -1.15
HPS4-216ENST00000493455 LCE2AQ5TA79 106 aaPredicted RBP7.82□□□□□ -1.16
HPS4-216ENST00000493455 SNURFQ9Y675 71 aa7.81□□□□□ -1.16
HPS4-216ENST00000493455 H1FX-AS1Q4G0G2 97 aa7.8□□□□□ -1.16
HPS4-216ENST00000493455 C20orf197Q8N268 126 aa7.78□□□□□ -1.16
HPS4-216ENST00000493455 ANAPC13Q9BS18 74 aa7.76□□□□□ -1.17
HPS4-216ENST00000493455 KRTAP3-1Q9BYR8 98 aa7.76□□□□□ -1.17
HPS4-216ENST00000493455 FLGP20930 4061 aaPredicted RBP7.74□□□□□ -1.17
HPS4-216ENST00000493455 COX7CP15954 63 aa7.73□□□□□ -1.17
HPS4-216ENST00000493455 S4R3F8 94 aa7.69□□□□□ -1.18
HPS4-216ENST00000493455 KRTAP10-6P60371 365 aaPredicted RBP7.65□□□□□ -1.18
HPS4-216ENST00000493455 A8MUN3 132 aa7.62□□□□□ -1.19
HPS4-216ENST00000493455 LCA10Q71F78 164 aa7.62□□□□□ -1.19
HPS4-216ENST00000493455 LORP23490 312 aaPredicted RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms