RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 LOC110117498A0A087WWA1 95 aa12.67□□□□□ -0.38
UPF3A-209ENST00000492270 LCE2DQ5TA82 110 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-209ENST00000492270 C14orf132Q9NPU4 83 aa12.66□□□□□ -0.38
UPF3A-209ENST00000492270 TRBV20-1A0A075B6N2 111 aa12.65□□□□□ -0.38
UPF3A-209ENST00000492270 C21orf62-AS1Q17RA5 79 aa12.65□□□□□ -0.38
UPF3A-209ENST00000492270 C8orf87E5RJ46 101 aa12.62□□□□□ -0.39
UPF3A-209ENST00000492270 J3KT08 172 aa12.61□□□□□ -0.39
UPF3A-209ENST00000492270 TAX1BP3O14907 124 aa12.61□□□□□ -0.39
UPF3A-209ENST00000492270 C9orf118A6NHY6 69 aa12.6□□□□□ -0.39
UPF3A-209ENST00000492270 PDE6GP18545 87 aa12.58□□□□□ -0.4
UPF3A-209ENST00000492270 KRTAP9-6A0A140TA67 174 aa12.56□□□□□ -0.4
UPF3A-209ENST00000492270 MTURNQ8N3F0 131 aa12.56□□□□□ -0.4
UPF3A-209ENST00000492270 A0A1B0GW54 56 aa12.55□□□□□ -0.4
UPF3A-209ENST00000492270 A0A1W2PPM0 123 aa12.55□□□□□ -0.4
UPF3A-209ENST00000492270 H3BT86 120 aa12.5□□□□□ -0.41
UPF3A-209ENST00000492270 NDUFB1O75438 58 aa12.5□□□□□ -0.41
UPF3A-209ENST00000492270 A8MWP4 228 aa12.49□□□□□ -0.41
UPF3A-209ENST00000492270 IGKV3D-7A0A0C4DH55 119 aa12.47□□□□□ -0.41
UPF3A-209ENST00000492270 HRES1P13985 223 aa12.47□□□□□ -0.41
UPF3A-209ENST00000492270 C8orf17Q9NRJ1 99 aa12.47□□□□□ -0.41
UPF3A-209ENST00000492270 NREPQ16612 68 aa12.44□□□□□ -0.42
UPF3A-209ENST00000492270 ZCCHC13Q8WW36 166 aaKnown RBP12.44□□□□□ -0.42
UPF3A-209ENST00000492270 MPLKIPQ8TAP9 179 aa12.43□□□□□ -0.42
UPF3A-209ENST00000492270 Q8N9P0 234 aaPredicted RBP12.42□□□□□ -0.42
UPF3A-209ENST00000492270 FAM236DA0A1B0GTK5 79 aa12.4□□□□□ -0.42
UPF3A-209ENST00000492270 FAM236CP0DP71 79 aa12.4□□□□□ -0.42
UPF3A-209ENST00000492270 PRR15Q8IV56 129 aa12.38□□□□□ -0.43
UPF3A-209ENST00000492270 SPCS1Q9Y6A9 102 aa12.38□□□□□ -0.43
UPF3A-209ENST00000492270 Q6ZVQ6 151 aa12.36□□□□□ -0.43
UPF3A-209ENST00000492270 RBM12B-AS1Q9P1G2 102 aa12.36□□□□□ -0.43
UPF3A-209ENST00000492270 FSIP2Q5CZC0 6907 aa12.33□□□□□ -0.44
UPF3A-209ENST00000492270 CRCT1Q9UGL9 99 aa12.33□□□□□ -0.44
UPF3A-209ENST00000492270 MMP24-AS1A0A0U1RRL7 71 aa12.32□□□□□ -0.44
UPF3A-209ENST00000492270 SMCPP49901 116 aaPredicted RBP12.32□□□□□ -0.44
UPF3A-209ENST00000492270 K7EQZ3 153 aa12.31□□□□□ -0.44
UPF3A-209ENST00000492270 SPINK7P58062 85 aa12.31□□□□□ -0.44
UPF3A-209ENST00000492270 COL5A1-AS1Q5SY13 56 aa12.29□□□□□ -0.44
UPF3A-209ENST00000492270 KRTAP9-8Q9BYQ0 159 aa12.27□□□□□ -0.45
UPF3A-209ENST00000492270 TMEM254Q8TBM7 123 aa12.26□□□□□ -0.45
UPF3A-209ENST00000492270 MRPL34Q9BQ48 92 aaKnown RBP12.25□□□□□ -0.45
UPF3A-209ENST00000492270 BPY2O14599 106 aa12.23□□□□□ -0.45
UPF3A-209ENST00000492270 PRO0461Q9UI25 63 aa12.22□□□□□ -0.45
UPF3A-209ENST00000492270 hDV103S1A0JD37 113 aa12.2□□□□□ -0.46
UPF3A-209ENST00000492270 K7EP34 96 aa12.19□□□□□ -0.46
UPF3A-209ENST00000492270 Q8N9L7 120 aa12.17□□□□□ -0.46
UPF3A-209ENST00000492270 WFDC13Q8IUB5 93 aa12.16□□□□□ -0.46
UPF3A-209ENST00000492270 NDUFS5O43920 106 aa12.15□□□□□ -0.46
UPF3A-209ENST00000492270 MT2AP02795 61 aa12.12□□□□□ -0.47
UPF3A-209ENST00000492270 PCP4L1A6NKN8 68 aa12.09□□□□□ -0.47
UPF3A-209ENST00000492270 LINC00846Q9NV44 126 aa12.09□□□□□ -0.47
UPF3A-209ENST00000492270 CASC2Q6XLA1 102 aa12.05□□□□□ -0.48
UPF3A-209ENST00000492270 MT1FP04733 61 aa12.04□□□□□ -0.48
UPF3A-209ENST00000492270 Q5W150 140 aa12.03□□□□□ -0.48
UPF3A-209ENST00000492270 UBL5Q9BZL1 73 aa12.02□□□□□ -0.49
UPF3A-209ENST00000492270 GTF2H5Q6ZYL4 71 aa12□□□□□ -0.49
UPF3A-209ENST00000492270 HCG22E2RYF7 251 aa11.99□□□□□ -0.49
UPF3A-209ENST00000492270 IGKV2D-30A0A075B6S6 120 aa11.97□□□□□ -0.49
UPF3A-209ENST00000492270 IGKV2-30P06310 120 aa11.97□□□□□ -0.49
UPF3A-209ENST00000492270 KRTAP10-10P60014 251 aa11.94□□□□□ -0.5
UPF3A-209ENST00000492270 F8W1H4 67 aa11.92□□□□□ -0.5
UPF3A-209ENST00000492270 ETDBQ3ZM63 59 aa11.92□□□□□ -0.5
UPF3A-209ENST00000492270 C7orf65Q6ZTY9 151 aa11.92□□□□□ -0.5
UPF3A-209ENST00000492270 USH2AO75445 5202 aa11.91□□□□□ -0.5
UPF3A-209ENST00000492270 KRTAP9-3Q9BYQ3 159 aa11.88□□□□□ -0.51
UPF3A-209ENST00000492270 CXCL6P80162 114 aa11.86□□□□□ -0.51
UPF3A-209ENST00000492270 H1FX-AS1Q4G0G2 97 aa11.85□□□□□ -0.51
UPF3A-209ENST00000492270 LCE2BO14633 110 aa11.84□□□□□ -0.51
UPF3A-209ENST00000492270 SSPOA2VEC9 5147 aa11.77□□□□□ -0.52
UPF3A-209ENST00000492270 C4orf26Q17RF5 130 aa11.76□□□□□ -0.53
UPF3A-209ENST00000492270 TP53AIP1Q9HCN2 124 aa11.64□□□□□ -0.55
UPF3A-209ENST00000492270 KRTAP3-1Q9BYR8 98 aa11.61□□□□□ -0.55
UPF3A-209ENST00000492270 KRTAP19-1Q8IUB9 90 aa11.59□□□□□ -0.55
UPF3A-209ENST00000492270 ACYP1P07311 99 aa11.58□□□□□ -0.56
UPF3A-209ENST00000492270 FAM240AA0A1B0GVK7 77 aa11.54□□□□□ -0.56
UPF3A-209ENST00000492270 C1orf64Q8NEQ6 169 aa11.53□□□□□ -0.56
UPF3A-209ENST00000492270 FCGBPQ9Y6R7 5405 aaPredicted RBP11.51□□□□□ -0.57
UPF3A-209ENST00000492270 C5orf47Q569G3 176 aa11.5□□□□□ -0.57
UPF3A-209ENST00000492270 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-209ENST00000492270 ATP5EP2Q5VTU8 51 aa11.48□□□□□ -0.57
UPF3A-209ENST00000492270 S4R3F8 94 aa11.48□□□□□ -0.57
UPF3A-209ENST00000492270 HIST1H4AP62805 103 aaKnown RBP11.45□□□□□ -0.58
UPF3A-209ENST00000492270 TRAV22A0A0B4J277 110 aa11.44□□□□□ -0.58
UPF3A-209ENST00000492270 CYP4F30PQ9H0H9 118 aa11.44□□□□□ -0.58
UPF3A-209ENST00000492270 A0A1B0GV90 55 aa11.42□□□□□ -0.58
UPF3A-209ENST00000492270 LCA10Q71F78 164 aa11.42□□□□□ -0.58
UPF3A-209ENST00000492270 KRTAP19-6Q3LI70 58 aa11.37□□□□□ -0.59
UPF3A-209ENST00000492270 A0A087WVE0 104 aa11.36□□□□□ -0.59
UPF3A-209ENST00000492270 LOC101927531A0A1B0GV80 90 aa11.36□□□□□ -0.59
UPF3A-209ENST00000492270 CSAG1Q6PB30 78 aa11.34□□□□□ -0.59
UPF3A-209ENST00000492270 LINC00643Q86TS7 51 aa11.32□□□□□ -0.6
UPF3A-209ENST00000492270 FAM236AA0A1B0GUQ0 79 aa11.31□□□□□ -0.6
UPF3A-209ENST00000492270 FAM236BA0A1B0GV22 79 aa11.31□□□□□ -0.6
UPF3A-209ENST00000492270 KRTAP9-7A8MTY7 169 aa11.31□□□□□ -0.6
UPF3A-209ENST00000492270 UQCRQO14949 82 aa11.31□□□□□ -0.6
UPF3A-209ENST00000492270 H0Y9P7 68 aa11.3□□□□□ -0.6
UPF3A-209ENST00000492270 KRTAP3-3Q9BYR6 98 aa11.28□□□□□ -0.6
UPF3A-209ENST00000492270 ATOX1O00244 68 aa11.22□□□□□ -0.61
UPF3A-209ENST00000492270 OCR1Q9BZK8 76 aa11.12□□□□□ -0.63
UPF3A-209ENST00000492270 LINC00208Q96KT6 92 aa11.11□□□□□ -0.63
UPF3A-209ENST00000492270 KLKP1Q107X0 134 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms