RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 CCKP06307 115 aa12.38□□□□□ -0.43
LIME1-206ENST00000487026 IGHV6-1A0A0B4J1U7 121 aa12.35□□□□□ -0.43
LIME1-206ENST00000487026 FAM236DA0A1B0GTK5 79 aa12.34□□□□□ -0.43
LIME1-206ENST00000487026 FAM236CP0DP71 79 aa12.34□□□□□ -0.43
LIME1-206ENST00000487026 BAALC-AS2P0C853 105 aa12.33□□□□□ -0.44
LIME1-206ENST00000487026 UBE2V1Q13404 147 aa12.32□□□□□ -0.44
LIME1-206ENST00000487026 USH2AO75445 5202 aa12.3□□□□□ -0.44
LIME1-206ENST00000487026 VPS25Q9BRG1 176 aa12.3□□□□□ -0.44
LIME1-206ENST00000487026 SPCS1Q9Y6A9 102 aa12.3□□□□□ -0.44
LIME1-206ENST00000487026 HRES1P13985 223 aa12.29□□□□□ -0.44
LIME1-206ENST00000487026 MPLKIPQ8TAP9 179 aa12.27□□□□□ -0.45
LIME1-206ENST00000487026 C9JAW5 83 aa12.26□□□□□ -0.45
LIME1-206ENST00000487026 RBM12B-AS1Q9P1G2 102 aa12.25□□□□□ -0.45
LIME1-206ENST00000487026 SSPOA2VEC9 5147 aa12.25□□□□□ -0.45
LIME1-206ENST00000487026 MT2AP02795 61 aa12.23□□□□□ -0.45
LIME1-206ENST00000487026 RBM3P98179 157 aaKnown RBP12.23□□□□□ -0.45
LIME1-206ENST00000487026 GTF2H5Q6ZYL4 71 aa12.22□□□□□ -0.45
LIME1-206ENST00000487026 A0A1B0GVX0 72 aa12.21□□□□□ -0.45
LIME1-206ENST00000487026 H3BT86 120 aa12.2□□□□□ -0.46
LIME1-206ENST00000487026 JMJD7-PLA2G4BH0Y9G9 81 aa12.19□□□□□ -0.46
LIME1-206ENST00000487026 K7EP34 96 aa12.19□□□□□ -0.46
LIME1-206ENST00000487026 DSCR8Q96T75 97 aa12.19□□□□□ -0.46
LIME1-206ENST00000487026 C8orf87E5RJ46 101 aa12.18□□□□□ -0.46
LIME1-206ENST00000487026 MT1FP04733 61 aa12.14□□□□□ -0.47
LIME1-206ENST00000487026 PDE6GP18545 87 aa12.11□□□□□ -0.47
LIME1-206ENST00000487026 C21orf62-AS1Q17RA5 79 aa12.1□□□□□ -0.47
LIME1-206ENST00000487026 ZCCHC13Q8WW36 166 aaKnown RBP12.1□□□□□ -0.47
LIME1-206ENST00000487026 Q6ZQT0 140 aa12.09□□□□□ -0.47
LIME1-206ENST00000487026 MTURNQ8N3F0 131 aa12.09□□□□□ -0.47
LIME1-206ENST00000487026 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.08□□□□□ -0.48
LIME1-206ENST00000487026 J3KT08 172 aa12.08□□□□□ -0.48
LIME1-206ENST00000487026 KRTAP10-10P60014 251 aa12.08□□□□□ -0.48
LIME1-206ENST00000487026 LCE2BO14633 110 aa12.06□□□□□ -0.48
LIME1-206ENST00000487026 SPINK7P58062 85 aa12.06□□□□□ -0.48
LIME1-206ENST00000487026 KRTAP9-3Q9BYQ3 159 aa12.05□□□□□ -0.48
LIME1-206ENST00000487026 F8W1H4 67 aa12.04□□□□□ -0.48
LIME1-206ENST00000487026 LOC110117498A0A087WWA1 95 aa12.03□□□□□ -0.48
LIME1-206ENST00000487026 NDUFB1O75438 58 aa12.01□□□□□ -0.49
LIME1-206ENST00000487026 PRO0461Q9UI25 63 aa12.01□□□□□ -0.49
LIME1-206ENST00000487026 A0A1B0GW54 56 aa12□□□□□ -0.49
LIME1-206ENST00000487026 KRTAP9-7A8MTY7 169 aa12□□□□□ -0.49
LIME1-206ENST00000487026 Q8N9P0 234 aaPredicted RBP12□□□□□ -0.49
LIME1-206ENST00000487026 C14orf132Q9NPU4 83 aa12□□□□□ -0.49
LIME1-206ENST00000487026 SMCPP49901 116 aaPredicted RBP11.98□□□□□ -0.49
LIME1-206ENST00000487026 FCGBPQ9Y6R7 5405 aaPredicted RBP11.97□□□□□ -0.49
LIME1-206ENST00000487026 C8orf17Q9NRJ1 99 aa11.97□□□□□ -0.49
LIME1-206ENST00000487026 KRTAP19-1Q8IUB9 90 aa11.95□□□□□ -0.5
LIME1-206ENST00000487026 A8MWP4 228 aa11.94□□□□□ -0.5
LIME1-206ENST00000487026 IGKV3D-7A0A0C4DH55 119 aa11.93□□□□□ -0.5
LIME1-206ENST00000487026 A0A1B0GV90 55 aa11.9□□□□□ -0.5
LIME1-206ENST00000487026 WFDC13Q8IUB5 93 aa11.89□□□□□ -0.51
LIME1-206ENST00000487026 Q6ZVQ6 151 aa11.87□□□□□ -0.51
LIME1-206ENST00000487026 ETDBQ3ZM63 59 aa11.85□□□□□ -0.51
LIME1-206ENST00000487026 PRR15Q8IV56 129 aa11.83□□□□□ -0.52
LIME1-206ENST00000487026 NREPQ16612 68 aa11.81□□□□□ -0.52
LIME1-206ENST00000487026 MMP24-AS1A0A0U1RRL7 71 aa11.76□□□□□ -0.53
LIME1-206ENST00000487026 TMEM254Q8TBM7 123 aa11.74□□□□□ -0.53
LIME1-206ENST00000487026 MRPL34Q9BQ48 92 aaKnown RBP11.74□□□□□ -0.53
LIME1-206ENST00000487026 UBL5Q9BZL1 73 aa11.69□□□□□ -0.54
LIME1-206ENST00000487026 K7EQZ3 153 aa11.68□□□□□ -0.54
LIME1-206ENST00000487026 NDUFS5O43920 106 aa11.68□□□□□ -0.54
LIME1-206ENST00000487026 hDV103S1A0JD37 113 aa11.67□□□□□ -0.54
LIME1-206ENST00000487026 ACYP1P07311 99 aa11.64□□□□□ -0.55
LIME1-206ENST00000487026 H1FX-AS1Q4G0G2 97 aa11.64□□□□□ -0.55
LIME1-206ENST00000487026 KRTAP19-6Q3LI70 58 aa11.63□□□□□ -0.55
LIME1-206ENST00000487026 BPY2O14599 106 aa11.62□□□□□ -0.55
LIME1-206ENST00000487026 LINC00846Q9NV44 126 aa11.62□□□□□ -0.55
LIME1-206ENST00000487026 IGKV2D-30A0A075B6S6 120 aa11.59□□□□□ -0.55
LIME1-206ENST00000487026 IGKV2-30P06310 120 aa11.59□□□□□ -0.55
LIME1-206ENST00000487026 FAM240AA0A1B0GVK7 77 aa11.58□□□□□ -0.56
LIME1-206ENST00000487026 Q5W150 140 aa11.58□□□□□ -0.56
LIME1-206ENST00000487026 J3QR89 54 aa11.57□□□□□ -0.56
LIME1-206ENST00000487026 MACF1Q9UPN3 7388 aaKnown RBP11.56□□□□□ -0.56
LIME1-206ENST00000487026 Q8N9L7 120 aa11.52□□□□□ -0.57
LIME1-206ENST00000487026 C7orf65Q6ZTY9 151 aa11.49□□□□□ -0.57
LIME1-206ENST00000487026 SYNE2Q8WXH0 6885 aaKnown RBP11.46□□□□□ -0.57
LIME1-206ENST00000487026 CXCL6P80162 114 aa11.45□□□□□ -0.58
LIME1-206ENST00000487026 CASC2Q6XLA1 102 aa11.45□□□□□ -0.58
LIME1-206ENST00000487026 HCG22E2RYF7 251 aa11.44□□□□□ -0.58
LIME1-206ENST00000487026 C4orf26Q17RF5 130 aa11.42□□□□□ -0.58
LIME1-206ENST00000487026 ATP5EP2Q5VTU8 51 aa11.4□□□□□ -0.58
LIME1-206ENST00000487026 K7ERU9 68 aa11.35□□□□□ -0.59
LIME1-206ENST00000487026 LINC00643Q86TS7 51 aa11.35□□□□□ -0.59
LIME1-206ENST00000487026 C5orf47Q569G3 176 aa11.29□□□□□ -0.6
LIME1-206ENST00000487026 KRTAP3-1Q9BYR8 98 aa11.25□□□□□ -0.61
LIME1-206ENST00000487026 HIST1H4AP62805 103 aaKnown RBP11.23□□□□□ -0.61
LIME1-206ENST00000487026 KRTAP6-3Q3LI67 103 aa11.21□□□□□ -0.61
LIME1-206ENST00000487026 FAM236AA0A1B0GUQ0 79 aa11.2□□□□□ -0.62
LIME1-206ENST00000487026 FAM236BA0A1B0GV22 79 aa11.2□□□□□ -0.62
LIME1-206ENST00000487026 S4R3F8 94 aa11.17□□□□□ -0.62
LIME1-206ENST00000487026 C1orf64Q8NEQ6 169 aa11.15□□□□□ -0.62
LIME1-206ENST00000487026 CSAG1Q6PB30 78 aa11.11□□□□□ -0.63
LIME1-206ENST00000487026 LCA10Q71F78 164 aa11.11□□□□□ -0.63
LIME1-206ENST00000487026 TP53AIP1Q9HCN2 124 aa11.1□□□□□ -0.63
LIME1-206ENST00000487026 MT1BP07438 61 aa11.07□□□□□ -0.64
LIME1-206ENST00000487026 IMUPQ9GZP8 106 aa11.04□□□□□ -0.64
LIME1-206ENST00000487026 A6NN06 94 aa11.03□□□□□ -0.64
LIME1-206ENST00000487026 Q5VV11 94 aa11.03□□□□□ -0.64
LIME1-206ENST00000487026 A0A087WVE0 104 aa11.02□□□□□ -0.65
LIME1-206ENST00000487026 SPRR2GQ9BYE4 73 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms