RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 C9orf163Q8N9P6 203 aa4.8□□□□□ -1.64
USP4-211ENST00000485450 LINC01558Q9Y6Z2 57 aa4.8□□□□□ -1.64
USP4-211ENST00000485450 C1orf137Q5JT78 98 aa4.79□□□□□ -1.64
USP4-211ENST00000485450 HTN3P15516 51 aa4.79□□□□□ -1.64
USP4-211ENST00000485450 COA5Q86WW8 74 aa4.79□□□□□ -1.64
USP4-211ENST00000485450 DEFB105AQ8NG35 78 aa4.79□□□□□ -1.64
USP4-211ENST00000485450 IGKV2D-24A0A075B6R9 120 aa4.78□□□□□ -1.64
USP4-211ENST00000485450 SEC61BP60468 96 aaKnown RBP4.78□□□□□ -1.64
USP4-211ENST00000485450 H0Y9J4 135 aa4.78□□□□□ -1.64
USP4-211ENST00000485450 FAM229AH3BQW9 127 aa4.78□□□□□ -1.64
USP4-211ENST00000485450 H0Y9P7 68 aa4.77□□□□□ -1.65
USP4-211ENST00000485450 UBE2DNLQ8IWF7 75 aa4.77□□□□□ -1.65
USP4-211ENST00000485450 C15orf56Q8N910 161 aa4.77□□□□□ -1.65
USP4-211ENST00000485450 KRTAP29-1A8MX34 341 aaPredicted RBP4.76□□□□□ -1.65
USP4-211ENST00000485450 IGLV7-46A0A075B6I9 117 aa4.76□□□□□ -1.65
USP4-211ENST00000485450 KRTAP10-4P60372 401 aaPredicted RBP4.76□□□□□ -1.65
USP4-211ENST00000485450 WFDC13Q8IUB5 93 aa4.75□□□□□ -1.65
USP4-211ENST00000485450 TLX1NBP0CAT3 122 aa4.75□□□□□ -1.65
USP4-211ENST00000485450 DEFB116Q30KQ4 102 aa4.75□□□□□ -1.65
USP4-211ENST00000485450 DHRS4-AS1Q9P1J3 65 aa4.75□□□□□ -1.65
USP4-211ENST00000485450 ZNF706Q9Y5V0 76 aaPredicted RBP4.75□□□□□ -1.65
USP4-211ENST00000485450 C7orf33Q8WU49 177 aa4.74□□□□□ -1.65
USP4-211ENST00000485450 KRTAP17-1Q9BYP8 105 aa4.74□□□□□ -1.65
USP4-211ENST00000485450 CASC2Q6XLA1 102 aa4.74□□□□□ -1.65
USP4-211ENST00000485450 KRTAP10-2P60368 255 aa4.73□□□□□ -1.65
USP4-211ENST00000485450 C14orf177Q52M58 125 aa4.73□□□□□ -1.65
USP4-211ENST00000485450 FAT1Q14517 4588 aa4.73□□□□□ -1.65
USP4-211ENST00000485450 ASB16-AS1Q495Z4 193 aa4.72□□□□□ -1.65
USP4-211ENST00000485450 SPAG11AQ6PDA7 123 aa4.72□□□□□ -1.65
USP4-211ENST00000485450 Q6ZRX8 168 aa4.72□□□□□ -1.65
USP4-211ENST00000485450 CAMK2N2Q96S95 79 aa4.72□□□□□ -1.65
USP4-211ENST00000485450 ABCA13Q86UQ4 5058 aa4.71□□□□□ -1.66
USP4-211ENST00000485450 TNXBP22105 4242 aa4.71□□□□□ -1.66
USP4-211ENST00000485450 IGLV1-50A0A075B6I6 118 aa4.7□□□□□ -1.66
USP4-211ENST00000485450 A0A087X002 238 aa4.7□□□□□ -1.66
USP4-211ENST00000485450 KRTAP4-16G5E9R7 235 aaPredicted RBP4.7□□□□□ -1.66
USP4-211ENST00000485450 CSAG1Q6PB30 78 aa4.7□□□□□ -1.66
USP4-211ENST00000485450 RETNLBQ9BQ08 111 aa4.7□□□□□ -1.66
USP4-211ENST00000485450 IGLV5-37A0A075B6J1 123 aa4.69□□□□□ -1.66
USP4-211ENST00000485450 SPACA4Q8TDM5 124 aa4.68□□□□□ -1.66
USP4-211ENST00000485450 KIAA1109Q2LD37 5005 aa4.68□□□□□ -1.66
USP4-211ENST00000485450 SPRR1AP35321 89 aa4.68□□□□□ -1.66
USP4-211ENST00000485450 KRTAP10-1P60331 282 aa4.68□□□□□ -1.66
USP4-211ENST00000485450 P0C880 135 aa4.67□□□□□ -1.66
USP4-211ENST00000485450 RPL37AP61513 92 aaKnown RBP4.66□□□□□ -1.66
USP4-211ENST00000485450 IGFL1Q6UW32 110 aa4.66□□□□□ -1.66
USP4-211ENST00000485450 IGHV6-1A0A0B4J1U7 121 aa4.65□□□□□ -1.66
USP4-211ENST00000485450 HRES1P13985 223 aa4.64□□□□□ -1.67
USP4-211ENST00000485450 A0A087WSZ3 146 aa4.64□□□□□ -1.67
USP4-211ENST00000485450 ROMO1P60602 79 aa4.64□□□□□ -1.67
USP4-211ENST00000485450 A8MWP4 228 aa4.64□□□□□ -1.67
USP4-211ENST00000485450 Q8N1X5 172 aa4.64□□□□□ -1.67
USP4-211ENST00000485450 IGLV8-61A0A075B6I0 122 aa4.63□□□□□ -1.67
USP4-211ENST00000485450 A0A0G2JQZ4 141 aa4.63□□□□□ -1.67
USP4-211ENST00000485450 A0A1W2PNN7 141 aa4.63□□□□□ -1.67
USP4-211ENST00000485450 PCOTHQ58A44 107 aa4.63□□□□□ -1.67
USP4-211ENST00000485450 PCLOQ9Y6V0 5065 aa4.63□□□□□ -1.67
USP4-211ENST00000485450 KRTAP7-1Q8IUC3 87 aa4.62□□□□□ -1.67
USP4-211ENST00000485450 IGLV9-49A0A0B4J1Y8 123 aa4.62□□□□□ -1.67
USP4-211ENST00000485450 RPL37AP8A6NKH3 93 aa4.62□□□□□ -1.67
USP4-211ENST00000485450 IGLV5-52A0A0A0MRZ9 124 aa4.62□□□□□ -1.67
USP4-211ENST00000485450 MMP24-AS1A0A0U1RRL7 71 aa4.6□□□□□ -1.67
USP4-211ENST00000485450 LINC00472Q9H8W2 130 aa4.6□□□□□ -1.67
USP4-211ENST00000485450 TP53AIP1Q9HCN2 124 aa4.6□□□□□ -1.67
USP4-211ENST00000485450 MYCBP2O75592 4640 aa4.6□□□□□ -1.67
USP4-211ENST00000485450 PANO1I0J062 215 aa4.59□□□□□ -1.67
USP4-211ENST00000485450 IGKV2-24A0A0C4DH68 120 aa4.59□□□□□ -1.68
USP4-211ENST00000485450 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.58□□□□□ -1.68
USP4-211ENST00000485450 SPATA8Q6RVD6 105 aa4.58□□□□□ -1.68
USP4-211ENST00000485450 FAM168BA1KXE4 195 aa4.57□□□□□ -1.68
USP4-211ENST00000485450 ZNF861PO60384 105 aa4.56□□□□□ -1.68
USP4-211ENST00000485450 CIRBP-AS1Q8TBR5 109 aa4.56□□□□□ -1.68
USP4-211ENST00000485450 A0A096LNI7 61 aa4.55□□□□□ -1.68
USP4-211ENST00000485450 KRTAP13-1Q8IUC0 172 aa4.55□□□□□ -1.68
USP4-211ENST00000485450 REG3GQ6UW15 175 aa4.55□□□□□ -1.68
USP4-211ENST00000485450 KRTAP4-5Q9BYR2 181 aa4.53□□□□□ -1.68
USP4-211ENST00000485450 NOTCH2NLQ7Z3S9 236 aa4.53□□□□□ -1.68
USP4-211ENST00000485450 MIR22HGQ0VDD5 57 aa4.5□□□□□ -1.69
USP4-211ENST00000485450 A0A1B0GU69 56 aa4.5□□□□□ -1.69
USP4-211ENST00000485450 ACYP2P14621 99 aa4.5□□□□□ -1.69
USP4-211ENST00000485450 SPRR1BP22528 89 aa4.5□□□□□ -1.69
USP4-211ENST00000485450 C8orf17Q9NRJ1 99 aa4.49□□□□□ -1.69
USP4-211ENST00000485450 KRTAP25-1Q3LHN0 102 aa4.49□□□□□ -1.69
USP4-211ENST00000485450 Q5VSD8 79 aa4.49□□□□□ -1.69
USP4-211ENST00000485450 KRTAP11-1Q8IUC1 163 aa4.49□□□□□ -1.69
USP4-211ENST00000485450 UQCR11O14957 56 aa4.48□□□□□ -1.69
USP4-211ENST00000485450 PRLHP81277 87 aa4.48□□□□□ -1.69
USP4-211ENST00000485450 Q96NJ1 140 aa4.48□□□□□ -1.69
USP4-211ENST00000485450 SPINK6Q6UWN8 80 aa4.47□□□□□ -1.69
USP4-211ENST00000485450 MUC17Q685J3 4493 aa4.47□□□□□ -1.69
USP4-211ENST00000485450 MT1HL1P0DM35 61 aa4.46□□□□□ -1.69
USP4-211ENST00000485450 CHTF8P0CG12 524 aa4.46□□□□□ -1.7
USP4-211ENST00000485450 LRP1Q07954 4544 aaKnown RBP4.45□□□□□ -1.7
USP4-211ENST00000485450 KRTAP10-8P60410 259 aa4.45□□□□□ -1.7
USP4-211ENST00000485450 MRPL34Q9BQ48 92 aaKnown RBP4.45□□□□□ -1.7
USP4-211ENST00000485450 LINC00483Q53H64 154 aa4.45□□□□□ -1.7
USP4-211ENST00000485450 KRTAP1-4P0C5Y4 121 aa4.45□□□□□ -1.7
USP4-211ENST00000485450 DMAC1Q96GE9 116 aa4.45□□□□□ -1.7
USP4-211ENST00000485450 A8MUU9 505 aa4.44□□□□□ -1.7
USP4-211ENST00000485450 A0A1B0GVX0 72 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 220.2 ms