RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 RBM3P98179 157 aaKnown RBP8.2□□□□□ -1.1
COL9A3-208ENST00000469802 HRES1P13985 223 aa8.19□□□□□ -1.1
COL9A3-208ENST00000469802 DSCR8Q96T75 97 aa8.19□□□□□ -1.1
COL9A3-208ENST00000469802 IGHV6-1A0A0B4J1U7 121 aa8.18□□□□□ -1.1
COL9A3-208ENST00000469802 A0A1B0GVX0 72 aa8.16□□□□□ -1.1
COL9A3-208ENST00000469802 C8orf87E5RJ46 101 aa8.15□□□□□ -1.1
COL9A3-208ENST00000469802 VPS25Q9BRG1 176 aa8.15□□□□□ -1.1
COL9A3-208ENST00000469802 C9orf118A6NHY6 69 aa8.14□□□□□ -1.11
COL9A3-208ENST00000469802 C9JAW5 83 aa8.14□□□□□ -1.11
COL9A3-208ENST00000469802 JMJD7-PLA2G4BH0Y9G9 81 aa8.14□□□□□ -1.11
COL9A3-208ENST00000469802 FAM236DA0A1B0GTK5 79 aa8.13□□□□□ -1.11
COL9A3-208ENST00000469802 FAM236CP0DP71 79 aa8.13□□□□□ -1.11
COL9A3-208ENST00000469802 C21orf62-AS1Q17RA5 79 aa8.13□□□□□ -1.11
COL9A3-208ENST00000469802 USH2AO75445 5202 aa8.13□□□□□ -1.11
COL9A3-208ENST00000469802 TAX1BP3O14907 124 aa8.12□□□□□ -1.11
COL9A3-208ENST00000469802 MT2AP02795 61 aa8.12□□□□□ -1.11
COL9A3-208ENST00000469802 RBM12B-AS1Q9P1G2 102 aa8.12□□□□□ -1.11
COL9A3-208ENST00000469802 A0A1W2PPM0 123 aa8.1□□□□□ -1.11
COL9A3-208ENST00000469802 J3KT08 172 aa8.09□□□□□ -1.11
COL9A3-208ENST00000469802 PDE6GP18545 87 aa8.09□□□□□ -1.11
COL9A3-208ENST00000469802 Q6ZQT0 140 aa8.09□□□□□ -1.11
COL9A3-208ENST00000469802 SSPOA2VEC9 5147 aa8.07□□□□□ -1.12
COL9A3-208ENST00000469802 LOC110117498A0A087WWA1 95 aa8.07□□□□□ -1.12
COL9A3-208ENST00000469802 ZCCHC13Q8WW36 166 aaKnown RBP8.07□□□□□ -1.12
COL9A3-208ENST00000469802 H3BT86 120 aa8.06□□□□□ -1.12
COL9A3-208ENST00000469802 MT1FP04733 61 aa8.06□□□□□ -1.12
COL9A3-208ENST00000469802 A0A1B0GW54 56 aa8.05□□□□□ -1.12
COL9A3-208ENST00000469802 COL5A1-AS1Q5SY13 56 aa8.04□□□□□ -1.12
COL9A3-208ENST00000469802 Q8N9P0 234 aaPredicted RBP8.04□□□□□ -1.12
COL9A3-208ENST00000469802 C14orf132Q9NPU4 83 aa8.04□□□□□ -1.12
COL9A3-208ENST00000469802 SPCS1Q9Y6A9 102 aa8.02□□□□□ -1.13
COL9A3-208ENST00000469802 A8MWP4 228 aa8□□□□□ -1.13
COL9A3-208ENST00000469802 SPINK7P58062 85 aa8□□□□□ -1.13
COL9A3-208ENST00000469802 NDUFB1O75438 58 aa7.99□□□□□ -1.13
COL9A3-208ENST00000469802 MTURNQ8N3F0 131 aa7.99□□□□□ -1.13
COL9A3-208ENST00000469802 KRTAP9-3Q9BYQ3 159 aa7.99□□□□□ -1.13
COL9A3-208ENST00000469802 LCE2BO14633 110 aa7.98□□□□□ -1.13
COL9A3-208ENST00000469802 C8orf17Q9NRJ1 99 aa7.98□□□□□ -1.13
COL9A3-208ENST00000469802 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.97□□□□□ -1.13
COL9A3-208ENST00000469802 IGKV3D-7A0A0C4DH55 119 aa7.96□□□□□ -1.14
COL9A3-208ENST00000469802 KRTAP10-10P60014 251 aa7.95□□□□□ -1.14
COL9A3-208ENST00000469802 PCP4L1A6NKN8 68 aa7.94□□□□□ -1.14
COL9A3-208ENST00000469802 NREPQ16612 68 aa7.92□□□□□ -1.14
COL9A3-208ENST00000469802 FCGBPQ9Y6R7 5405 aaPredicted RBP7.92□□□□□ -1.14
COL9A3-208ENST00000469802 K7EP34 96 aa7.91□□□□□ -1.14
COL9A3-208ENST00000469802 Q6ZVQ6 151 aa7.91□□□□□ -1.14
COL9A3-208ENST00000469802 WFDC13Q8IUB5 93 aa7.91□□□□□ -1.14
COL9A3-208ENST00000469802 PRR15Q8IV56 129 aa7.9□□□□□ -1.14
COL9A3-208ENST00000469802 KRTAP9-7A8MTY7 169 aa7.89□□□□□ -1.15
COL9A3-208ENST00000469802 MMP24-AS1A0A0U1RRL7 71 aa7.88□□□□□ -1.15
COL9A3-208ENST00000469802 KRTAP19-1Q8IUB9 90 aa7.88□□□□□ -1.15
COL9A3-208ENST00000469802 SMCPP49901 116 aaPredicted RBP7.87□□□□□ -1.15
COL9A3-208ENST00000469802 GTF2H5Q6ZYL4 71 aa7.87□□□□□ -1.15
COL9A3-208ENST00000469802 TMEM254Q8TBM7 123 aa7.86□□□□□ -1.15
COL9A3-208ENST00000469802 PRO0461Q9UI25 63 aa7.85□□□□□ -1.15
COL9A3-208ENST00000469802 MRPL34Q9BQ48 92 aaKnown RBP7.84□□□□□ -1.15
COL9A3-208ENST00000469802 K7EQZ3 153 aa7.81□□□□□ -1.16
COL9A3-208ENST00000469802 BPY2O14599 106 aa7.79□□□□□ -1.16
COL9A3-208ENST00000469802 hDV103S1A0JD37 113 aa7.78□□□□□ -1.16
COL9A3-208ENST00000469802 F8W1H4 67 aa7.78□□□□□ -1.16
COL9A3-208ENST00000469802 UBL5Q9BZL1 73 aa7.74□□□□□ -1.17
COL9A3-208ENST00000469802 KRTAP19-6Q3LI70 58 aa7.73□□□□□ -1.17
COL9A3-208ENST00000469802 H1FX-AS1Q4G0G2 97 aa7.73□□□□□ -1.17
COL9A3-208ENST00000469802 NDUFS5O43920 106 aa7.72□□□□□ -1.17
COL9A3-208ENST00000469802 Q5W150 140 aa7.71□□□□□ -1.18
COL9A3-208ENST00000469802 LINC00846Q9NV44 126 aa7.71□□□□□ -1.18
COL9A3-208ENST00000469802 ETDBQ3ZM63 59 aa7.7□□□□□ -1.18
COL9A3-208ENST00000469802 C7orf65Q6ZTY9 151 aa7.69□□□□□ -1.18
COL9A3-208ENST00000469802 IGKV2D-30A0A075B6S6 120 aa7.68□□□□□ -1.18
COL9A3-208ENST00000469802 IGKV2-30P06310 120 aa7.68□□□□□ -1.18
COL9A3-208ENST00000469802 MACF1Q9UPN3 7388 aaKnown RBP7.67□□□□□ -1.18
COL9A3-208ENST00000469802 Q8N9L7 120 aa7.66□□□□□ -1.18
COL9A3-208ENST00000469802 CASC2Q6XLA1 102 aa7.64□□□□□ -1.19
COL9A3-208ENST00000469802 SYNE2Q8WXH0 6885 aaKnown RBP7.63□□□□□ -1.19
COL9A3-208ENST00000469802 HCG22E2RYF7 251 aa7.61□□□□□ -1.19
COL9A3-208ENST00000469802 CXCL6P80162 114 aa7.58□□□□□ -1.2
COL9A3-208ENST00000469802 ACYP1P07311 99 aa7.57□□□□□ -1.2
COL9A3-208ENST00000469802 C4orf26Q17RF5 130 aa7.57□□□□□ -1.2
COL9A3-208ENST00000469802 FAM240AA0A1B0GVK7 77 aa7.53□□□□□ -1.2
COL9A3-208ENST00000469802 A0A1B0GV90 55 aa7.5□□□□□ -1.21
COL9A3-208ENST00000469802 KRTAP3-1Q9BYR8 98 aa7.5□□□□□ -1.21
COL9A3-208ENST00000469802 ATP5EP2Q5VTU8 51 aa7.47□□□□□ -1.21
COL9A3-208ENST00000469802 C5orf47Q569G3 176 aa7.45□□□□□ -1.22
COL9A3-208ENST00000469802 TP53AIP1Q9HCN2 124 aa7.45□□□□□ -1.22
COL9A3-208ENST00000469802 S4R3F8 94 aa7.42□□□□□ -1.22
COL9A3-208ENST00000469802 KRTAP6-3Q3LI67 103 aa7.41□□□□□ -1.22
COL9A3-208ENST00000469802 C1orf64Q8NEQ6 169 aa7.41□□□□□ -1.22
COL9A3-208ENST00000469802 LCA10Q71F78 164 aa7.39□□□□□ -1.23
COL9A3-208ENST00000469802 FAM236AA0A1B0GUQ0 79 aa7.38□□□□□ -1.23
COL9A3-208ENST00000469802 FAM236BA0A1B0GV22 79 aa7.38□□□□□ -1.23
COL9A3-208ENST00000469802 HIST1H4AP62805 103 aaKnown RBP7.38□□□□□ -1.23
COL9A3-208ENST00000469802 MT1BP07438 61 aa7.37□□□□□ -1.23
COL9A3-208ENST00000469802 CSAG1Q6PB30 78 aa7.37□□□□□ -1.23
COL9A3-208ENST00000469802 LINC00643Q86TS7 51 aa7.37□□□□□ -1.23
COL9A3-208ENST00000469802 SPRR2GQ9BYE4 73 aa7.36□□□□□ -1.23
COL9A3-208ENST00000469802 J3QR89 54 aa7.35□□□□□ -1.23
COL9A3-208ENST00000469802 KRTAP19-8Q3LI54 63 aa7.34□□□□□ -1.23
COL9A3-208ENST00000469802 TRAV22A0A0B4J277 110 aa7.3□□□□□ -1.24
COL9A3-208ENST00000469802 Q5VV11 94 aa7.3□□□□□ -1.24
COL9A3-208ENST00000469802 KRTAP3-3Q9BYR6 98 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms