RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 COX6CP09669 75 aa10.4□□□□□ -0.74
COL9A3-207ENST00000467819 VPS25Q9BRG1 176 aa10.4□□□□□ -0.74
COL9A3-207ENST00000467819 HSD52Q0P140 79 aa10.39□□□□□ -0.75
COL9A3-207ENST00000467819 KRTAP9-3Q9BYQ3 159 aa10.39□□□□□ -0.75
COL9A3-207ENST00000467819 KRTAP19-1Q8IUB9 90 aa10.38□□□□□ -0.75
COL9A3-207ENST00000467819 A0A1B0GVX0 72 aa10.37□□□□□ -0.75
COL9A3-207ENST00000467819 C8orf87E5RJ46 101 aa10.37□□□□□ -0.75
COL9A3-207ENST00000467819 UBE2V1Q13404 147 aa10.37□□□□□ -0.75
COL9A3-207ENST00000467819 MTURNQ8N3F0 131 aa10.32□□□□□ -0.76
COL9A3-207ENST00000467819 ZCCHC13Q8WW36 166 aaKnown RBP10.31□□□□□ -0.76
COL9A3-207ENST00000467819 RBM3P98179 157 aaKnown RBP10.3□□□□□ -0.76
COL9A3-207ENST00000467819 DSCR8Q96T75 97 aa10.29□□□□□ -0.76
COL9A3-207ENST00000467819 SPINK7P58062 85 aa10.27□□□□□ -0.77
COL9A3-207ENST00000467819 PYY3Q5JQD4 70 aa10.26□□□□□ -0.77
COL9A3-207ENST00000467819 SCGB1C2P0DMR2 95 aa10.25□□□□□ -0.77
COL9A3-207ENST00000467819 J3KT08 172 aa10.24□□□□□ -0.77
COL9A3-207ENST00000467819 C9JAW5 83 aa10.21□□□□□ -0.77
COL9A3-207ENST00000467819 NDUFB1O75438 58 aa10.19□□□□□ -0.78
COL9A3-207ENST00000467819 BAALC-AS2P0C853 105 aa10.19□□□□□ -0.78
COL9A3-207ENST00000467819 C21orf62-AS1Q17RA5 79 aa10.19□□□□□ -0.78
COL9A3-207ENST00000467819 Q6ZQT0 140 aa10.19□□□□□ -0.78
COL9A3-207ENST00000467819 UQCR10Q9UDW1 63 aa10.19□□□□□ -0.78
COL9A3-207ENST00000467819 MACF1Q9UPN3 7388 aaKnown RBP10.19□□□□□ -0.78
COL9A3-207ENST00000467819 WFDC13Q8IUB5 93 aa10.18□□□□□ -0.78
COL9A3-207ENST00000467819 Q8N9P0 234 aaPredicted RBP10.18□□□□□ -0.78
COL9A3-207ENST00000467819 LYRM7Q5U5X0 104 aa10.17□□□□□ -0.78
COL9A3-207ENST00000467819 C8orf17Q9NRJ1 99 aa10.15□□□□□ -0.78
COL9A3-207ENST00000467819 A8MWP4 228 aa10.13□□□□□ -0.79
COL9A3-207ENST00000467819 SYNE2Q8WXH0 6885 aaKnown RBP10.11□□□□□ -0.79
COL9A3-207ENST00000467819 LINC00846Q9NV44 126 aa10.11□□□□□ -0.79
COL9A3-207ENST00000467819 IGKV3D-7A0A0C4DH55 119 aa10.09□□□□□ -0.79
COL9A3-207ENST00000467819 KRTAP19-6Q3LI70 58 aa10.08□□□□□ -0.8
COL9A3-207ENST00000467819 Q6ZVQ6 151 aa10.06□□□□□ -0.8
COL9A3-207ENST00000467819 JMJD7-PLA2G4BH0Y9G9 81 aa10.05□□□□□ -0.8
COL9A3-207ENST00000467819 LOC110117498A0A087WWA1 95 aa10.03□□□□□ -0.8
COL9A3-207ENST00000467819 NAA38Q9BRA0 125 aaKnown RBP10.03□□□□□ -0.8
COL9A3-207ENST00000467819 ATXN8Q156A1 80 aa10.02□□□□□ -0.81
COL9A3-207ENST00000467819 A0A1B0GW54 56 aa10.01□□□□□ -0.81
COL9A3-207ENST00000467819 C14orf132Q9NPU4 83 aa10□□□□□ -0.81
COL9A3-207ENST00000467819 PRR15Q8IV56 129 aa9.99□□□□□ -0.81
COL9A3-207ENST00000467819 PDE6GP18545 87 aa9.98□□□□□ -0.81
COL9A3-207ENST00000467819 TMA7Q9Y2S6 64 aaKnown RBP9.98□□□□□ -0.81
COL9A3-207ENST00000467819 MMP24-AS1A0A0U1RRL7 71 aa9.96□□□□□ -0.82
COL9A3-207ENST00000467819 MRPL34Q9BQ48 92 aaKnown RBP9.96□□□□□ -0.82
COL9A3-207ENST00000467819 NREPQ16612 68 aa9.95□□□□□ -0.82
COL9A3-207ENST00000467819 TMEM254Q8TBM7 123 aa9.95□□□□□ -0.82
COL9A3-207ENST00000467819 H1FX-AS1Q4G0G2 97 aa9.94□□□□□ -0.82
COL9A3-207ENST00000467819 M0R143 59 aa9.91□□□□□ -0.82
COL9A3-207ENST00000467819 NDUFS5O43920 106 aa9.91□□□□□ -0.82
COL9A3-207ENST00000467819 hDV103S1A0JD37 113 aa9.88□□□□□ -0.83
COL9A3-207ENST00000467819 K7EQZ3 153 aa9.87□□□□□ -0.83
COL9A3-207ENST00000467819 IGKV2D-30A0A075B6S6 120 aa9.85□□□□□ -0.83
COL9A3-207ENST00000467819 IGKV2-30P06310 120 aa9.85□□□□□ -0.83
COL9A3-207ENST00000467819 C7orf65Q6ZTY9 151 aa9.79□□□□□ -0.84
COL9A3-207ENST00000467819 KRTAP6-3Q3LI67 103 aa9.78□□□□□ -0.84
COL9A3-207ENST00000467819 Q5W150 140 aa9.78□□□□□ -0.84
COL9A3-207ENST00000467819 BPY2O14599 106 aa9.74□□□□□ -0.85
COL9A3-207ENST00000467819 BATFQ16520 125 aa9.7□□□□□ -0.86
COL9A3-207ENST00000467819 C4orf26Q17RF5 130 aa9.7□□□□□ -0.86
COL9A3-207ENST00000467819 H3BT86 120 aa9.69□□□□□ -0.86
COL9A3-207ENST00000467819 Q8N9L7 120 aa9.69□□□□□ -0.86
COL9A3-207ENST00000467819 HCG22E2RYF7 251 aa9.68□□□□□ -0.86
COL9A3-207ENST00000467819 CASC2Q6XLA1 102 aa9.67□□□□□ -0.86
COL9A3-207ENST00000467819 C5orf47Q569G3 176 aa9.64□□□□□ -0.87
COL9A3-207ENST00000467819 TSTD3H0UI37 97 aa9.63□□□□□ -0.87
COL9A3-207ENST00000467819 FAM236AA0A1B0GUQ0 79 aa9.62□□□□□ -0.87
COL9A3-207ENST00000467819 FAM236BA0A1B0GV22 79 aa9.62□□□□□ -0.87
COL9A3-207ENST00000467819 SMIM6P0DI80 62 aa9.6□□□□□ -0.87
COL9A3-207ENST00000467819 C9orf118A6NHY6 69 aa9.59□□□□□ -0.87
COL9A3-207ENST00000467819 CXCL6P80162 114 aa9.58□□□□□ -0.88
COL9A3-207ENST00000467819 A0A1W2PPM0 123 aa9.57□□□□□ -0.88
COL9A3-207ENST00000467819 A6NN06 94 aa9.55□□□□□ -0.88
COL9A3-207ENST00000467819 TAX1BP3O14907 124 aa9.54□□□□□ -0.88
COL9A3-207ENST00000467819 MT1BP07438 61 aa9.53□□□□□ -0.88
COL9A3-207ENST00000467819 KRTAP3-1Q9BYR8 98 aa9.53□□□□□ -0.88
COL9A3-207ENST00000467819 S4R3F8 94 aa9.53□□□□□ -0.88
COL9A3-207ENST00000467819 Q5VV11 94 aa9.51□□□□□ -0.89
COL9A3-207ENST00000467819 NEBP20929 6669 aa9.51□□□□□ -0.89
COL9A3-207ENST00000467819 CSAG1Q6PB30 78 aa9.48□□□□□ -0.89
COL9A3-207ENST00000467819 C1orf64Q8NEQ6 169 aa9.47□□□□□ -0.89
COL9A3-207ENST00000467819 LCA10Q71F78 164 aa9.46□□□□□ -0.9
COL9A3-207ENST00000467819 KRTAP19-8Q3LI54 63 aa9.45□□□□□ -0.9
COL9A3-207ENST00000467819 SPRR2GQ9BYE4 73 aa9.45□□□□□ -0.9
COL9A3-207ENST00000467819 MUC12Q9UKN1 5478 aa9.45□□□□□ -0.9
COL9A3-207ENST00000467819 UBL5Q9BZL1 73 aa9.43□□□□□ -0.9
COL9A3-207ENST00000467819 SMCPP49901 116 aaPredicted RBP9.42□□□□□ -0.9
COL9A3-207ENST00000467819 SPCS1Q9Y6A9 102 aa9.42□□□□□ -0.9
COL9A3-207ENST00000467819 KRTAP10-5P60370 271 aa9.36□□□□□ -0.91
COL9A3-207ENST00000467819 KLKP1Q107X0 134 aa9.35□□□□□ -0.91
COL9A3-207ENST00000467819 TP53AIP1Q9HCN2 124 aa9.3□□□□□ -0.92
COL9A3-207ENST00000467819 PRO0461Q9UI25 63 aa9.28□□□□□ -0.92
COL9A3-207ENST00000467819 KRTAP20-1Q3LI63 56 aa9.23□□□□□ -0.93
COL9A3-207ENST00000467819 IMUPQ9GZP8 106 aa9.22□□□□□ -0.93
COL9A3-207ENST00000467819 A0A087WVE0 104 aa9.2□□□□□ -0.94
COL9A3-207ENST00000467819 KRTAP5-9P26371 169 aa9.2□□□□□ -0.94
COL9A3-207ENST00000467819 LOC105371267A0A1B0GV96 52 aa9.19□□□□□ -0.94
COL9A3-207ENST00000467819 CYP4F30PQ9H0H9 118 aa9.19□□□□□ -0.94
COL9A3-207ENST00000467819 K7EP34 96 aa9.18□□□□□ -0.94
COL9A3-207ENST00000467819 KMT2DO14686 5537 aa9.16□□□□□ -0.94
COL9A3-207ENST00000467819 CRIPTQ9P021 101 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms