RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 Q96NJ1 140 aa6.48□□□□□ -1.37
SQSTM1-206ENST00000466342 C14orf132Q9NPU4 83 aa6.47□□□□□ -1.37
SQSTM1-206ENST00000466342 C21orf62-AS1Q17RA5 79 aa6.46□□□□□ -1.38
SQSTM1-206ENST00000466342 A0A1B0GW54 56 aa6.44□□□□□ -1.38
SQSTM1-206ENST00000466342 SMCPP49901 116 aaPredicted RBP6.44□□□□□ -1.38
SQSTM1-206ENST00000466342 GTF2H5Q6ZYL4 71 aa6.44□□□□□ -1.38
SQSTM1-206ENST00000466342 PRO0461Q9UI25 63 aa6.44□□□□□ -1.38
SQSTM1-206ENST00000466342 LINC00472Q9H8W2 130 aa6.43□□□□□ -1.38
SQSTM1-206ENST00000466342 M0R2T5 61 aa6.42□□□□□ -1.38
SQSTM1-206ENST00000466342 SSPOA2VEC9 5147 aa6.42□□□□□ -1.38
SQSTM1-206ENST00000466342 IGKV4-1P06312 121 aa6.41□□□□□ -1.38
SQSTM1-206ENST00000466342 SIGMAR1Q99720 223 aa6.41□□□□□ -1.38
SQSTM1-206ENST00000466342 DEFB116Q30KQ4 102 aa6.39□□□□□ -1.39
SQSTM1-206ENST00000466342 USH2AO75445 5202 aa6.39□□□□□ -1.39
SQSTM1-206ENST00000466342 FCGBPQ9Y6R7 5405 aaPredicted RBP6.38□□□□□ -1.39
SQSTM1-206ENST00000466342 F8W1H4 67 aa6.37□□□□□ -1.39
SQSTM1-206ENST00000466342 PCOTHQ58A44 107 aa6.37□□□□□ -1.39
SQSTM1-206ENST00000466342 FLGP20930 4061 aaPredicted RBP6.36□□□□□ -1.39
SQSTM1-206ENST00000466342 J3KT08 172 aa6.36□□□□□ -1.39
SQSTM1-206ENST00000466342 RPL37P61927 97 aaKnown RBP6.36□□□□□ -1.39
SQSTM1-206ENST00000466342 DSCR10P59022 87 aa6.34□□□□□ -1.39
SQSTM1-206ENST00000466342 NREPQ16612 68 aa6.33□□□□□ -1.4
SQSTM1-206ENST00000466342 IGHV6-1A0A0B4J1U7 121 aa6.32□□□□□ -1.4
SQSTM1-206ENST00000466342 A0A1B0GVX0 72 aa6.32□□□□□ -1.4
SQSTM1-206ENST00000466342 LINC00313P59037 77 aa6.32□□□□□ -1.4
SQSTM1-206ENST00000466342 Q75L30 129 aa6.32□□□□□ -1.4
SQSTM1-206ENST00000466342 ETDBQ3ZM63 59 aa6.31□□□□□ -1.4
SQSTM1-206ENST00000466342 C8orf87E5RJ46 101 aa6.3□□□□□ -1.4
SQSTM1-206ENST00000466342 NOTCH2NLQ7Z3S9 236 aa6.3□□□□□ -1.4
SQSTM1-206ENST00000466342 C20orf166-AS1Q96NR2 134 aa6.3□□□□□ -1.4
SQSTM1-206ENST00000466342 KRTAP16-1A8MUX0 517 aa6.29□□□□□ -1.4
SQSTM1-206ENST00000466342 A8MWP4 228 aa6.29□□□□□ -1.4
SQSTM1-206ENST00000466342 NDUFB1O75438 58 aa6.29□□□□□ -1.4
SQSTM1-206ENST00000466342 A8MUU9 505 aa6.28□□□□□ -1.4
SQSTM1-206ENST00000466342 Q6ZVQ6 151 aa6.27□□□□□ -1.41
SQSTM1-206ENST00000466342 IGKV3D-7A0A0C4DH55 119 aa6.26□□□□□ -1.41
SQSTM1-206ENST00000466342 ATP11AUNQ6ZP68 121 aa6.26□□□□□ -1.41
SQSTM1-206ENST00000466342 BPY2O14599 106 aa6.25□□□□□ -1.41
SQSTM1-206ENST00000466342 COX6B2Q6YFQ2 88 aa6.25□□□□□ -1.41
SQSTM1-206ENST00000466342 LINC00846Q9NV44 126 aa6.25□□□□□ -1.41
SQSTM1-206ENST00000466342 PRR15Q8IV56 129 aa6.24□□□□□ -1.41
SQSTM1-206ENST00000466342 UBL5Q9BZL1 73 aa6.24□□□□□ -1.41
SQSTM1-206ENST00000466342 C8orf17Q9NRJ1 99 aa6.23□□□□□ -1.41
SQSTM1-206ENST00000466342 K7EQZ3 153 aa6.22□□□□□ -1.41
SQSTM1-206ENST00000466342 KRTAP19-1Q8IUB9 90 aa6.22□□□□□ -1.41
SQSTM1-206ENST00000466342 MMP24-AS1A0A0U1RRL7 71 aa6.19□□□□□ -1.42
SQSTM1-206ENST00000466342 Q8N9P0 234 aaPredicted RBP6.18□□□□□ -1.42
SQSTM1-206ENST00000466342 SYNE2Q8WXH0 6885 aaKnown RBP6.18□□□□□ -1.42
SQSTM1-206ENST00000466342 FAM240AA0A1B0GVK7 77 aa6.16□□□□□ -1.42
SQSTM1-206ENST00000466342 ACYP1P07311 99 aa6.16□□□□□ -1.42
SQSTM1-206ENST00000466342 Q8N9L7 120 aa6.16□□□□□ -1.42
SQSTM1-206ENST00000466342 TMEM254Q8TBM7 123 aa6.16□□□□□ -1.42
SQSTM1-206ENST00000466342 KRTAP9-8Q9BYQ0 159 aa6.16□□□□□ -1.42
SQSTM1-206ENST00000466342 hDV103S1A0JD37 113 aa6.15□□□□□ -1.42
SQSTM1-206ENST00000466342 MRPL34Q9BQ48 92 aaKnown RBP6.15□□□□□ -1.42
SQSTM1-206ENST00000466342 MACF1Q9UPN3 7388 aaKnown RBP6.15□□□□□ -1.43
SQSTM1-206ENST00000466342 CXCL6P80162 114 aa6.13□□□□□ -1.43
SQSTM1-206ENST00000466342 ZCCHC13Q8WW36 166 aaKnown RBP6.13□□□□□ -1.43
SQSTM1-206ENST00000466342 CASC2Q6XLA1 102 aa6.11□□□□□ -1.43
SQSTM1-206ENST00000466342 WFDC13Q8IUB5 93 aa6.1□□□□□ -1.43
SQSTM1-206ENST00000466342 HCG22E2RYF7 251 aa6.08□□□□□ -1.44
SQSTM1-206ENST00000466342 LCE2BO14633 110 aa6.08□□□□□ -1.44
SQSTM1-206ENST00000466342 NDUFS5O43920 106 aa6.08□□□□□ -1.44
SQSTM1-206ENST00000466342 KRTAP6-3Q3LI67 103 aa6.08□□□□□ -1.44
SQSTM1-206ENST00000466342 ATP5EP2Q5VTU8 51 aa6.07□□□□□ -1.44
SQSTM1-206ENST00000466342 K7ERU9 68 aa6.05□□□□□ -1.44
SQSTM1-206ENST00000466342 J3QR89 54 aa6.04□□□□□ -1.44
SQSTM1-206ENST00000466342 HRES1P13985 223 aa6.02□□□□□ -1.45
SQSTM1-206ENST00000466342 SPINK7P58062 85 aa6.02□□□□□ -1.45
SQSTM1-206ENST00000466342 LINC00643Q86TS7 51 aa6.02□□□□□ -1.45
SQSTM1-206ENST00000466342 Q5W150 140 aa5.99□□□□□ -1.45
SQSTM1-206ENST00000466342 MPLKIPQ8TAP9 179 aa5.99□□□□□ -1.45
SQSTM1-206ENST00000466342 MT2AP02795 61 aa5.98□□□□□ -1.45
SQSTM1-206ENST00000466342 HIST1H4AP62805 103 aaKnown RBP5.98□□□□□ -1.45
SQSTM1-206ENST00000466342 KRTAP19-6Q3LI70 58 aa5.98□□□□□ -1.45
SQSTM1-206ENST00000466342 RBM12B-AS1Q9P1G2 102 aa5.98□□□□□ -1.45
SQSTM1-206ENST00000466342 KRTAP9-3Q9BYQ3 159 aa5.97□□□□□ -1.45
SQSTM1-206ENST00000466342 FAM236DA0A1B0GTK5 79 aa5.95□□□□□ -1.46
SQSTM1-206ENST00000466342 FAM236CP0DP71 79 aa5.95□□□□□ -1.46
SQSTM1-206ENST00000466342 TP53AIP1Q9HCN2 124 aa5.95□□□□□ -1.46
SQSTM1-206ENST00000466342 IGKV2D-30A0A075B6S6 120 aa5.93□□□□□ -1.46
SQSTM1-206ENST00000466342 IGKV2-30P06310 120 aa5.93□□□□□ -1.46
SQSTM1-206ENST00000466342 C7orf65Q6ZTY9 151 aa5.93□□□□□ -1.46
SQSTM1-206ENST00000466342 A0A087WVE0 104 aa5.92□□□□□ -1.46
SQSTM1-206ENST00000466342 MT1FP04733 61 aa5.92□□□□□ -1.46
SQSTM1-206ENST00000466342 KRTAP20-1Q3LI63 56 aa5.91□□□□□ -1.46
SQSTM1-206ENST00000466342 KRTAP10-10P60014 251 aa5.89□□□□□ -1.47
SQSTM1-206ENST00000466342 TRAV22A0A0B4J277 110 aa5.86□□□□□ -1.47
SQSTM1-206ENST00000466342 UQCRQO14949 82 aa5.85□□□□□ -1.47
SQSTM1-206ENST00000466342 MUC12Q9UKN1 5478 aa5.84□□□□□ -1.47
SQSTM1-206ENST00000466342 MT-ATP8P03928 68 aa5.84□□□□□ -1.47
SQSTM1-206ENST00000466342 NEBP20929 6669 aa5.83□□□□□ -1.48
SQSTM1-206ENST00000466342 IMUPQ9GZP8 106 aa5.81□□□□□ -1.48
SQSTM1-206ENST00000466342 H0Y9P7 68 aa5.8□□□□□ -1.48
SQSTM1-206ENST00000466342 C4orf26Q17RF5 130 aa5.8□□□□□ -1.48
SQSTM1-206ENST00000466342 OCR1Q9BZK8 76 aa5.8□□□□□ -1.48
SQSTM1-206ENST00000466342 LOC101927531A0A1B0GV80 90 aa5.79□□□□□ -1.48
SQSTM1-206ENST00000466342 ATOX1O00244 68 aa5.79□□□□□ -1.48
SQSTM1-206ENST00000466342 CYP4F30PQ9H0H9 118 aa5.79□□□□□ -1.48
SQSTM1-206ENST00000466342 H1FX-AS1Q4G0G2 97 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms