RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 LOC100996750A0A140TA64 210 aa9.85□□□□□ -0.83
COL9A3-203ENST00000462700 A0A1W2PPM0 123 aa9.85□□□□□ -0.83
COL9A3-203ENST00000462700 KRTAP16-1A8MUX0 517 aa9.85□□□□□ -0.83
COL9A3-203ENST00000462700 KRTAP4-6Q9BYQ5 205 aa9.85□□□□□ -0.83
COL9A3-203ENST00000462700 PDE6GP18545 87 aa9.84□□□□□ -0.83
COL9A3-203ENST00000462700 NOTCH2NLQ7Z3S9 236 aa9.84□□□□□ -0.83
COL9A3-203ENST00000462700 IGHV6-1A0A0B4J1U7 121 aa9.83□□□□□ -0.84
COL9A3-203ENST00000462700 C14orf132Q9NPU4 83 aa9.83□□□□□ -0.84
COL9A3-203ENST00000462700 A0A1B0GW54 56 aa9.82□□□□□ -0.84
COL9A3-203ENST00000462700 MT1HP80294 61 aa9.82□□□□□ -0.84
COL9A3-203ENST00000462700 A0A1B0GVX0 72 aa9.8□□□□□ -0.84
COL9A3-203ENST00000462700 J3KT08 172 aa9.8□□□□□ -0.84
COL9A3-203ENST00000462700 H3BT86 120 aa9.79□□□□□ -0.84
COL9A3-203ENST00000462700 C8orf87E5RJ46 101 aa9.78□□□□□ -0.84
COL9A3-203ENST00000462700 LORP23490 312 aaPredicted RBP9.78□□□□□ -0.84
COL9A3-203ENST00000462700 COX6B2Q6YFQ2 88 aa9.77□□□□□ -0.85
COL9A3-203ENST00000462700 MTURNQ8N3F0 131 aa9.77□□□□□ -0.85
COL9A3-203ENST00000462700 KRTAP9-2Q9BYQ4 174 aa9.74□□□□□ -0.85
COL9A3-203ENST00000462700 SPCS1Q9Y6A9 102 aa9.72□□□□□ -0.85
COL9A3-203ENST00000462700 NDUFB1O75438 58 aa9.71□□□□□ -0.86
COL9A3-203ENST00000462700 COL5A1-AS1Q5SY13 56 aa9.7□□□□□ -0.86
COL9A3-203ENST00000462700 A8MWP4 228 aa9.69□□□□□ -0.86
COL9A3-203ENST00000462700 NREPQ16612 68 aa9.68□□□□□ -0.86
COL9A3-203ENST00000462700 FLGP20930 4061 aaPredicted RBP9.65□□□□□ -0.86
COL9A3-203ENST00000462700 IGKV3D-7A0A0C4DH55 119 aa9.65□□□□□ -0.86
COL9A3-203ENST00000462700 C8orf17Q9NRJ1 99 aa9.64□□□□□ -0.87
COL9A3-203ENST00000462700 M0R2T5 61 aa9.63□□□□□ -0.87
COL9A3-203ENST00000462700 Q8N9P0 234 aaPredicted RBP9.61□□□□□ -0.87
COL9A3-203ENST00000462700 KRTAP10-6P60371 365 aaPredicted RBP9.6□□□□□ -0.87
COL9A3-203ENST00000462700 PRR15Q8IV56 129 aa9.6□□□□□ -0.87
COL9A3-203ENST00000462700 K7EP34 96 aa9.59□□□□□ -0.87
COL9A3-203ENST00000462700 ZCCHC13Q8WW36 166 aaKnown RBP9.59□□□□□ -0.87
COL9A3-203ENST00000462700 PRO0461Q9UI25 63 aa9.57□□□□□ -0.88
COL9A3-203ENST00000462700 Q6ZVQ6 151 aa9.56□□□□□ -0.88
COL9A3-203ENST00000462700 PCP4L1A6NKN8 68 aa9.55□□□□□ -0.88
COL9A3-203ENST00000462700 HRES1P13985 223 aa9.55□□□□□ -0.88
COL9A3-203ENST00000462700 MMP24-AS1A0A0U1RRL7 71 aa9.53□□□□□ -0.88
COL9A3-203ENST00000462700 K7EQZ3 153 aa9.53□□□□□ -0.88
COL9A3-203ENST00000462700 BPY2O14599 106 aa9.52□□□□□ -0.89
COL9A3-203ENST00000462700 MPLKIPQ8TAP9 179 aa9.52□□□□□ -0.89
COL9A3-203ENST00000462700 TMEM254Q8TBM7 123 aa9.5□□□□□ -0.89
COL9A3-203ENST00000462700 MRPL34Q9BQ48 92 aaKnown RBP9.49□□□□□ -0.89
COL9A3-203ENST00000462700 RBM12B-AS1Q9P1G2 102 aa9.49□□□□□ -0.89
COL9A3-203ENST00000462700 FAM236DA0A1B0GTK5 79 aa9.48□□□□□ -0.89
COL9A3-203ENST00000462700 FAM236CP0DP71 79 aa9.48□□□□□ -0.89
COL9A3-203ENST00000462700 GTF2H5Q6ZYL4 71 aa9.48□□□□□ -0.89
COL9A3-203ENST00000462700 SPINK7P58062 85 aa9.47□□□□□ -0.89
COL9A3-203ENST00000462700 hDV103S1A0JD37 113 aa9.46□□□□□ -0.9
COL9A3-203ENST00000462700 LINC00846Q9NV44 126 aa9.43□□□□□ -0.9
COL9A3-203ENST00000462700 F8W1H4 67 aa9.41□□□□□ -0.9
COL9A3-203ENST00000462700 Q8N9L7 120 aa9.41□□□□□ -0.9
COL9A3-203ENST00000462700 UBL5Q9BZL1 73 aa9.41□□□□□ -0.9
COL9A3-203ENST00000462700 KRTAP9-6A0A140TA67 174 aa9.4□□□□□ -0.9
COL9A3-203ENST00000462700 NDUFS5O43920 106 aa9.39□□□□□ -0.91
COL9A3-203ENST00000462700 WFDC13Q8IUB5 93 aa9.36□□□□□ -0.91
COL9A3-203ENST00000462700 ETDBQ3ZM63 59 aa9.35□□□□□ -0.91
COL9A3-203ENST00000462700 CASC2Q6XLA1 102 aa9.35□□□□□ -0.91
COL9A3-203ENST00000462700 KRTAP9-8Q9BYQ0 159 aa9.31□□□□□ -0.92
COL9A3-203ENST00000462700 HCG22E2RYF7 251 aa9.29□□□□□ -0.92
COL9A3-203ENST00000462700 Q5W150 140 aa9.28□□□□□ -0.92
COL9A3-203ENST00000462700 CRCT1Q9UGL9 99 aa9.23□□□□□ -0.93
COL9A3-203ENST00000462700 IGKV2D-30A0A075B6S6 120 aa9.22□□□□□ -0.93
COL9A3-203ENST00000462700 IGKV2-30P06310 120 aa9.22□□□□□ -0.93
COL9A3-203ENST00000462700 CXCL6P80162 114 aa9.22□□□□□ -0.93
COL9A3-203ENST00000462700 C7orf65Q6ZTY9 151 aa9.22□□□□□ -0.93
COL9A3-203ENST00000462700 FSIP2Q5CZC0 6907 aa9.21□□□□□ -0.94
COL9A3-203ENST00000462700 MT2AP02795 61 aa9.19□□□□□ -0.94
COL9A3-203ENST00000462700 ACYP1P07311 99 aa9.14□□□□□ -0.95
COL9A3-203ENST00000462700 MT1FP04733 61 aa9.12□□□□□ -0.95
COL9A3-203ENST00000462700 H1FX-AS1Q4G0G2 97 aa9.12□□□□□ -0.95
COL9A3-203ENST00000462700 FAM240AA0A1B0GVK7 77 aa9.11□□□□□ -0.95
COL9A3-203ENST00000462700 TP53AIP1Q9HCN2 124 aa9.09□□□□□ -0.95
COL9A3-203ENST00000462700 KRTAP10-10P60014 251 aa9.07□□□□□ -0.96
COL9A3-203ENST00000462700 C4orf26Q17RF5 130 aa9.05□□□□□ -0.96
COL9A3-203ENST00000462700 A0A1B0GV90 55 aa9.04□□□□□ -0.96
COL9A3-203ENST00000462700 ATP5EP2Q5VTU8 51 aa9.03□□□□□ -0.96
COL9A3-203ENST00000462700 KRTAP9-3Q9BYQ3 159 aa9.01□□□□□ -0.97
COL9A3-203ENST00000462700 USH2AO75445 5202 aa9□□□□□ -0.97
COL9A3-203ENST00000462700 HIST1H4AP62805 103 aaKnown RBP8.96□□□□□ -0.98
COL9A3-203ENST00000462700 KRTAP4-8Q9BYQ9 185 aa8.96□□□□□ -0.98
COL9A3-203ENST00000462700 KRTAP3-1Q9BYR8 98 aa8.93□□□□□ -0.98
COL9A3-203ENST00000462700 LINC00643Q86TS7 51 aa8.92□□□□□ -0.98
COL9A3-203ENST00000462700 TRAV22A0A0B4J277 110 aa8.91□□□□□ -0.98
COL9A3-203ENST00000462700 C1orf64Q8NEQ6 169 aa8.9□□□□□ -0.98
COL9A3-203ENST00000462700 SSPOA2VEC9 5147 aa8.88□□□□□ -0.99
COL9A3-203ENST00000462700 CYP4F30PQ9H0H9 118 aa8.88□□□□□ -0.99
COL9A3-203ENST00000462700 A0A087WVE0 104 aa8.87□□□□□ -0.99
COL9A3-203ENST00000462700 LOC101927531A0A1B0GV80 90 aa8.84□□□□□ -0.99
COL9A3-203ENST00000462700 UQCRQO14949 82 aa8.84□□□□□ -0.99
COL9A3-203ENST00000462700 S4R3F8 94 aa8.84□□□□□ -0.99
COL9A3-203ENST00000462700 C5orf47Q569G3 176 aa8.82□□□□□ -1
COL9A3-203ENST00000462700 H0Y9P7 68 aa8.79□□□□□ -1
COL9A3-203ENST00000462700 J3QR89 54 aa8.78□□□□□ -1
COL9A3-203ENST00000462700 ATOX1O00244 68 aa8.78□□□□□ -1
COL9A3-203ENST00000462700 LCA10Q71F78 164 aa8.78□□□□□ -1
COL9A3-203ENST00000462700 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.77□□□□□ -1.01
COL9A3-203ENST00000462700 CSAG1Q6PB30 78 aa8.74□□□□□ -1.01
COL9A3-203ENST00000462700 KRTAP19-1Q8IUB9 90 aa8.73□□□□□ -1.01
COL9A3-203ENST00000462700 OCR1Q9BZK8 76 aa8.7□□□□□ -1.02
COL9A3-203ENST00000462700 FAM236AA0A1B0GUQ0 79 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms