RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 DEFB116Q30KQ4 102 aa9.1□□□□□ -0.95
USP39-208ENST00000455732 MT1HP80294 61 aa9.09□□□□□ -0.95
USP39-208ENST00000455732 KRTAP16-1A8MUX0 517 aa9.08□□□□□ -0.96
USP39-208ENST00000455732 H3BT86 120 aa9.07□□□□□ -0.96
USP39-208ENST00000455732 J3KT08 172 aa9.06□□□□□ -0.96
USP39-208ENST00000455732 C14orf132Q9NPU4 83 aa9.06□□□□□ -0.96
USP39-208ENST00000455732 IGHV6-1A0A0B4J1U7 121 aa9.04□□□□□ -0.96
USP39-208ENST00000455732 A0A1B0GVX0 72 aa9.04□□□□□ -0.96
USP39-208ENST00000455732 NOTCH2NLQ7Z3S9 236 aa9.04□□□□□ -0.96
USP39-208ENST00000455732 C8orf87E5RJ46 101 aa9.03□□□□□ -0.96
USP39-208ENST00000455732 CRCT1Q9UGL9 99 aa9.02□□□□□ -0.97
USP39-208ENST00000455732 COL5A1-AS1Q5SY13 56 aa8.99□□□□□ -0.97
USP39-208ENST00000455732 SPCS1Q9Y6A9 102 aa8.99□□□□□ -0.97
USP39-208ENST00000455732 MTURNQ8N3F0 131 aa8.98□□□□□ -0.97
USP39-208ENST00000455732 FLGP20930 4061 aaPredicted RBP8.98□□□□□ -0.97
USP39-208ENST00000455732 FSIP2Q5CZC0 6907 aa8.97□□□□□ -0.97
USP39-208ENST00000455732 NDUFB1O75438 58 aa8.96□□□□□ -0.98
USP39-208ENST00000455732 COX6B2Q6YFQ2 88 aa8.96□□□□□ -0.98
USP39-208ENST00000455732 A8MWP4 228 aa8.95□□□□□ -0.98
USP39-208ENST00000455732 LORP23490 312 aaPredicted RBP8.92□□□□□ -0.98
USP39-208ENST00000455732 NREPQ16612 68 aa8.92□□□□□ -0.98
USP39-208ENST00000455732 KRTAP10-6P60371 365 aaPredicted RBP8.91□□□□□ -0.98
USP39-208ENST00000455732 IGKV3D-7A0A0C4DH55 119 aa8.9□□□□□ -0.98
USP39-208ENST00000455732 SMCPP49901 116 aaPredicted RBP8.89□□□□□ -0.99
USP39-208ENST00000455732 C8orf17Q9NRJ1 99 aa8.89□□□□□ -0.99
USP39-208ENST00000455732 K7EP34 96 aa8.88□□□□□ -0.99
USP39-208ENST00000455732 PRR15Q8IV56 129 aa8.87□□□□□ -0.99
USP39-208ENST00000455732 Q8N9P0 234 aaPredicted RBP8.87□□□□□ -0.99
USP39-208ENST00000455732 PRO0461Q9UI25 63 aa8.87□□□□□ -0.99
USP39-208ENST00000455732 M0R2T5 61 aa8.86□□□□□ -0.99
USP39-208ENST00000455732 ZCCHC13Q8WW36 166 aaKnown RBP8.83□□□□□ -1
USP39-208ENST00000455732 Q6ZVQ6 151 aa8.82□□□□□ -1
USP39-208ENST00000455732 PCP4L1A6NKN8 68 aa8.81□□□□□ -1
USP39-208ENST00000455732 MMP24-AS1A0A0U1RRL7 71 aa8.79□□□□□ -1
USP39-208ENST00000455732 HRES1P13985 223 aa8.79□□□□□ -1
USP39-208ENST00000455732 MPLKIPQ8TAP9 179 aa8.79□□□□□ -1
USP39-208ENST00000455732 K7EQZ3 153 aa8.78□□□□□ -1
USP39-208ENST00000455732 BPY2O14599 106 aa8.78□□□□□ -1
USP39-208ENST00000455732 GTF2H5Q6ZYL4 71 aa8.78□□□□□ -1
USP39-208ENST00000455732 TMEM254Q8TBM7 123 aa8.77□□□□□ -1.01
USP39-208ENST00000455732 MRPL34Q9BQ48 92 aaKnown RBP8.75□□□□□ -1.01
USP39-208ENST00000455732 RBM12B-AS1Q9P1G2 102 aa8.74□□□□□ -1.01
USP39-208ENST00000455732 hDV103S1A0JD37 113 aa8.73□□□□□ -1.01
USP39-208ENST00000455732 F8W1H4 67 aa8.71□□□□□ -1.02
USP39-208ENST00000455732 SPINK7P58062 85 aa8.71□□□□□ -1.02
USP39-208ENST00000455732 FAM236DA0A1B0GTK5 79 aa8.7□□□□□ -1.02
USP39-208ENST00000455732 FAM236CP0DP71 79 aa8.7□□□□□ -1.02
USP39-208ENST00000455732 LINC00846Q9NV44 126 aa8.7□□□□□ -1.02
USP39-208ENST00000455732 UBL5Q9BZL1 73 aa8.69□□□□□ -1.02
USP39-208ENST00000455732 Q8N9L7 120 aa8.66□□□□□ -1.02
USP39-208ENST00000455732 ETDBQ3ZM63 59 aa8.64□□□□□ -1.03
USP39-208ENST00000455732 NDUFS5O43920 106 aa8.62□□□□□ -1.03
USP39-208ENST00000455732 CASC2Q6XLA1 102 aa8.62□□□□□ -1.03
USP39-208ENST00000455732 KRTAP9-8Q9BYQ0 159 aa8.62□□□□□ -1.03
USP39-208ENST00000455732 WFDC13Q8IUB5 93 aa8.61□□□□□ -1.03
USP39-208ENST00000455732 HCG22E2RYF7 251 aa8.56□□□□□ -1.04
USP39-208ENST00000455732 CXCL6P80162 114 aa8.55□□□□□ -1.04
USP39-208ENST00000455732 Q5W150 140 aa8.55□□□□□ -1.04
USP39-208ENST00000455732 C7orf65Q6ZTY9 151 aa8.5□□□□□ -1.05
USP39-208ENST00000455732 IGKV2D-30A0A075B6S6 120 aa8.48□□□□□ -1.05
USP39-208ENST00000455732 MT2AP02795 61 aa8.48□□□□□ -1.05
USP39-208ENST00000455732 IGKV2-30P06310 120 aa8.48□□□□□ -1.05
USP39-208ENST00000455732 ACYP1P07311 99 aa8.48□□□□□ -1.05
USP39-208ENST00000455732 FAM240AA0A1B0GVK7 77 aa8.47□□□□□ -1.05
USP39-208ENST00000455732 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.42□□□□□ -1.06
USP39-208ENST00000455732 MT1FP04733 61 aa8.42□□□□□ -1.06
USP39-208ENST00000455732 TP53AIP1Q9HCN2 124 aa8.41□□□□□ -1.06
USP39-208ENST00000455732 H1FX-AS1Q4G0G2 97 aa8.4□□□□□ -1.06
USP39-208ENST00000455732 KRTAP9-7A8MTY7 169 aa8.39□□□□□ -1.07
USP39-208ENST00000455732 ATP5EP2Q5VTU8 51 aa8.39□□□□□ -1.07
USP39-208ENST00000455732 USH2AO75445 5202 aa8.37□□□□□ -1.07
USP39-208ENST00000455732 SSPOA2VEC9 5147 aa8.36□□□□□ -1.07
USP39-208ENST00000455732 A0A1B0GV90 55 aa8.35□□□□□ -1.07
USP39-208ENST00000455732 KRTAP9-3Q9BYQ3 159 aa8.35□□□□□ -1.07
USP39-208ENST00000455732 KRTAP10-10P60014 251 aa8.34□□□□□ -1.07
USP39-208ENST00000455732 C4orf26Q17RF5 130 aa8.32□□□□□ -1.08
USP39-208ENST00000455732 LCE2BO14633 110 aa8.31□□□□□ -1.08
USP39-208ENST00000455732 LINC00643Q86TS7 51 aa8.27□□□□□ -1.09
USP39-208ENST00000455732 HIST1H4AP62805 103 aaKnown RBP8.25□□□□□ -1.09
USP39-208ENST00000455732 TRAV22A0A0B4J277 110 aa8.23□□□□□ -1.09
USP39-208ENST00000455732 KRTAP3-1Q9BYR8 98 aa8.22□□□□□ -1.09
USP39-208ENST00000455732 FCGBPQ9Y6R7 5405 aaPredicted RBP8.22□□□□□ -1.09
USP39-208ENST00000455732 KRTAP19-1Q8IUB9 90 aa8.2□□□□□ -1.1
USP39-208ENST00000455732 CYP4F30PQ9H0H9 118 aa8.2□□□□□ -1.1
USP39-208ENST00000455732 C1orf64Q8NEQ6 169 aa8.19□□□□□ -1.1
USP39-208ENST00000455732 LOC101927531A0A1B0GV80 90 aa8.18□□□□□ -1.1
USP39-208ENST00000455732 UQCRQO14949 82 aa8.18□□□□□ -1.1
USP39-208ENST00000455732 A0A087WVE0 104 aa8.17□□□□□ -1.1
USP39-208ENST00000455732 J3QR89 54 aa8.16□□□□□ -1.1
USP39-208ENST00000455732 S4R3F8 94 aa8.14□□□□□ -1.11
USP39-208ENST00000455732 ATOX1O00244 68 aa8.13□□□□□ -1.11
USP39-208ENST00000455732 H0Y9P7 68 aa8.1□□□□□ -1.11
USP39-208ENST00000455732 C5orf47Q569G3 176 aa8.09□□□□□ -1.11
USP39-208ENST00000455732 LCA10Q71F78 164 aa8.08□□□□□ -1.12
USP39-208ENST00000455732 CSAG1Q6PB30 78 aa8.05□□□□□ -1.12
USP39-208ENST00000455732 OCR1Q9BZK8 76 aa8.05□□□□□ -1.12
USP39-208ENST00000455732 KRTAP19-6Q3LI70 58 aa8.01□□□□□ -1.13
USP39-208ENST00000455732 KRTAP3-3Q9BYR6 98 aa7.99□□□□□ -1.13
USP39-208ENST00000455732 MP68P56378 58 aa7.98□□□□□ -1.13
USP39-208ENST00000455732 LINC00208Q96KT6 92 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms