RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PSMB2P49721 201 aa6.54□□□□□ -1.36
HMGB3-204ENST00000448905 VAMP8Q9BV40 100 aa6.53□□□□□ -1.36
HMGB3-204ENST00000448905 A0A1B0GVX0 72 aa6.51□□□□□ -1.37
HMGB3-204ENST00000448905 C21orf62-AS1Q17RA5 79 aa6.51□□□□□ -1.37
HMGB3-204ENST00000448905 C2orf91Q6ZV80 131 aa6.51□□□□□ -1.37
HMGB3-204ENST00000448905 SPINK7P58062 85 aa6.5□□□□□ -1.37
HMGB3-204ENST00000448905 UBE2V1Q13404 147 aa6.5□□□□□ -1.37
HMGB3-204ENST00000448905 ZCCHC13Q8WW36 166 aaKnown RBP6.5□□□□□ -1.37
HMGB3-204ENST00000448905 J3KT08 172 aa6.49□□□□□ -1.37
HMGB3-204ENST00000448905 VPS25Q9BRG1 176 aa6.49□□□□□ -1.37
HMGB3-204ENST00000448905 FXYD2P54710 66 aa6.48□□□□□ -1.37
HMGB3-204ENST00000448905 LYRM7Q5U5X0 104 aa6.48□□□□□ -1.37
HMGB3-204ENST00000448905 DSCR8Q96T75 97 aa6.48□□□□□ -1.37
HMGB3-204ENST00000448905 MACF1Q9UPN3 7388 aaKnown RBP6.48□□□□□ -1.37
HMGB3-204ENST00000448905 NDUFB1O75438 58 aa6.47□□□□□ -1.37
HMGB3-204ENST00000448905 RBM3P98179 157 aaKnown RBP6.47□□□□□ -1.37
HMGB3-204ENST00000448905 SYNE2Q8WXH0 6885 aaKnown RBP6.46□□□□□ -1.38
HMGB3-204ENST00000448905 A8MWP4 228 aa6.46□□□□□ -1.38
HMGB3-204ENST00000448905 SCGB1C2P0DMR2 95 aa6.43□□□□□ -1.38
HMGB3-204ENST00000448905 C9JAW5 83 aa6.42□□□□□ -1.38
HMGB3-204ENST00000448905 HSD52Q0P140 79 aa6.42□□□□□ -1.38
HMGB3-204ENST00000448905 KRTAP19-6Q3LI70 58 aa6.42□□□□□ -1.38
HMGB3-204ENST00000448905 Q8N9P0 234 aaPredicted RBP6.41□□□□□ -1.38
HMGB3-204ENST00000448905 K7ERJ3 54 aa6.39□□□□□ -1.39
HMGB3-204ENST00000448905 Q6ZQT0 140 aa6.39□□□□□ -1.39
HMGB3-204ENST00000448905 WFDC13Q8IUB5 93 aa6.39□□□□□ -1.39
HMGB3-204ENST00000448905 BAALC-AS2P0C853 105 aa6.37□□□□□ -1.39
HMGB3-204ENST00000448905 A0A1B0GW54 56 aa6.35□□□□□ -1.39
HMGB3-204ENST00000448905 C8orf17Q9NRJ1 99 aa6.35□□□□□ -1.39
HMGB3-204ENST00000448905 IGKV3D-7A0A0C4DH55 119 aa6.32□□□□□ -1.4
HMGB3-204ENST00000448905 JMJD7-PLA2G4BH0Y9G9 81 aa6.32□□□□□ -1.4
HMGB3-204ENST00000448905 Q6ZVQ6 151 aa6.32□□□□□ -1.4
HMGB3-204ENST00000448905 PDE6GP18545 87 aa6.31□□□□□ -1.4
HMGB3-204ENST00000448905 H1FX-AS1Q4G0G2 97 aa6.31□□□□□ -1.4
HMGB3-204ENST00000448905 KRTAP6-3Q3LI67 103 aa6.3□□□□□ -1.4
HMGB3-204ENST00000448905 UQCR10Q9UDW1 63 aa6.29□□□□□ -1.4
HMGB3-204ENST00000448905 NREPQ16612 68 aa6.27□□□□□ -1.41
HMGB3-204ENST00000448905 PRR15Q8IV56 129 aa6.27□□□□□ -1.41
HMGB3-204ENST00000448905 LOC110117498A0A087WWA1 95 aa6.26□□□□□ -1.41
HMGB3-204ENST00000448905 ATXN8Q156A1 80 aa6.26□□□□□ -1.41
HMGB3-204ENST00000448905 PYY3Q5JQD4 70 aa6.25□□□□□ -1.41
HMGB3-204ENST00000448905 MRPL34Q9BQ48 92 aaKnown RBP6.25□□□□□ -1.41
HMGB3-204ENST00000448905 NDUFS5O43920 106 aa6.24□□□□□ -1.41
HMGB3-204ENST00000448905 TMEM254Q8TBM7 123 aa6.24□□□□□ -1.41
HMGB3-204ENST00000448905 hDV103S1A0JD37 113 aa6.21□□□□□ -1.42
HMGB3-204ENST00000448905 C14orf132Q9NPU4 83 aa6.19□□□□□ -1.42
HMGB3-204ENST00000448905 IGKV2D-30A0A075B6S6 120 aa6.18□□□□□ -1.42
HMGB3-204ENST00000448905 MMP24-AS1A0A0U1RRL7 71 aa6.18□□□□□ -1.42
HMGB3-204ENST00000448905 IGKV2-30P06310 120 aa6.18□□□□□ -1.42
HMGB3-204ENST00000448905 C7orf65Q6ZTY9 151 aa6.16□□□□□ -1.42
HMGB3-204ENST00000448905 M0R143 59 aa6.14□□□□□ -1.43
HMGB3-204ENST00000448905 K7EQZ3 153 aa6.12□□□□□ -1.43
HMGB3-204ENST00000448905 FAM236AA0A1B0GUQ0 79 aa6.11□□□□□ -1.43
HMGB3-204ENST00000448905 FAM236BA0A1B0GV22 79 aa6.11□□□□□ -1.43
HMGB3-204ENST00000448905 A6NN06 94 aa6.11□□□□□ -1.43
HMGB3-204ENST00000448905 BPY2O14599 106 aa6.11□□□□□ -1.43
HMGB3-204ENST00000448905 NAA38Q9BRA0 125 aaKnown RBP6.11□□□□□ -1.43
HMGB3-204ENST00000448905 C4orf26Q17RF5 130 aa6.09□□□□□ -1.43
HMGB3-204ENST00000448905 Q5W150 140 aa6.09□□□□□ -1.43
HMGB3-204ENST00000448905 C5orf47Q569G3 176 aa6.08□□□□□ -1.44
HMGB3-204ENST00000448905 NEBP20929 6669 aa6.08□□□□□ -1.44
HMGB3-204ENST00000448905 CASC2Q6XLA1 102 aa6.07□□□□□ -1.44
HMGB3-204ENST00000448905 Q5VV11 94 aa6.06□□□□□ -1.44
HMGB3-204ENST00000448905 HCG22E2RYF7 251 aa6.05□□□□□ -1.44
HMGB3-204ENST00000448905 CXCL6P80162 114 aa6.05□□□□□ -1.44
HMGB3-204ENST00000448905 CSAG1Q6PB30 78 aa6.05□□□□□ -1.44
HMGB3-204ENST00000448905 TSTD3H0UI37 97 aa6.02□□□□□ -1.45
HMGB3-204ENST00000448905 TMA7Q9Y2S6 64 aaKnown RBP6.02□□□□□ -1.45
HMGB3-204ENST00000448905 MUC12Q9UKN1 5478 aa6.02□□□□□ -1.45
HMGB3-204ENST00000448905 H3BT86 120 aa6.01□□□□□ -1.45
HMGB3-204ENST00000448905 S4R3F8 94 aa6.01□□□□□ -1.45
HMGB3-204ENST00000448905 KRTAP20-1Q3LI63 56 aa5.99□□□□□ -1.45
HMGB3-204ENST00000448905 Q8N9L7 120 aa5.98□□□□□ -1.45
HMGB3-204ENST00000448905 SPRR2GQ9BYE4 73 aa5.98□□□□□ -1.45
HMGB3-204ENST00000448905 MT1BP07438 61 aa5.97□□□□□ -1.45
HMGB3-204ENST00000448905 C1orf64Q8NEQ6 169 aa5.97□□□□□ -1.45
HMGB3-204ENST00000448905 KRTAP19-8Q3LI54 63 aa5.96□□□□□ -1.46
HMGB3-204ENST00000448905 BATFQ16520 125 aa5.94□□□□□ -1.46
HMGB3-204ENST00000448905 KRTAP3-1Q9BYR8 98 aa5.94□□□□□ -1.46
HMGB3-204ENST00000448905 KRTAP10-5P60370 271 aa5.93□□□□□ -1.46
HMGB3-204ENST00000448905 LCA10Q71F78 164 aa5.93□□□□□ -1.46
HMGB3-204ENST00000448905 KLKP1Q107X0 134 aa5.92□□□□□ -1.46
HMGB3-204ENST00000448905 C9orf118A6NHY6 69 aa5.91□□□□□ -1.46
HMGB3-204ENST00000448905 SMCPP49901 116 aaPredicted RBP5.91□□□□□ -1.46
HMGB3-204ENST00000448905 UBL5Q9BZL1 73 aa5.91□□□□□ -1.46
HMGB3-204ENST00000448905 IMUPQ9GZP8 106 aa5.91□□□□□ -1.46
HMGB3-204ENST00000448905 A0A1W2PPM0 123 aa5.89□□□□□ -1.47
HMGB3-204ENST00000448905 TP53AIP1Q9HCN2 124 aa5.89□□□□□ -1.47
HMGB3-204ENST00000448905 CRIPTQ9P021 101 aa5.88□□□□□ -1.47
HMGB3-204ENST00000448905 KRTAP5-9P26371 169 aa5.87□□□□□ -1.47
HMGB3-204ENST00000448905 MDN1Q9NU22 5596 aa5.85□□□□□ -1.47
HMGB3-204ENST00000448905 SMIM6P0DI80 62 aa5.85□□□□□ -1.47
HMGB3-204ENST00000448905 KMT2DO14686 5537 aa5.82□□□□□ -1.48
HMGB3-204ENST00000448905 TAX1BP3O14907 124 aa5.82□□□□□ -1.48
HMGB3-204ENST00000448905 SPCS1Q9Y6A9 102 aa5.8□□□□□ -1.48
HMGB3-204ENST00000448905 KRTAP2-3P0C7H8 128 aa5.76□□□□□ -1.49
HMGB3-204ENST00000448905 KRTAP2-4Q9BYR9 128 aa5.76□□□□□ -1.49
HMGB3-204ENST00000448905 CYP4F30PQ9H0H9 118 aa5.76□□□□□ -1.49
HMGB3-204ENST00000448905 NDUFC1O43677 76 aa5.73□□□□□ -1.49
HMGB3-204ENST00000448905 PRO2289Q9P1D8 64 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 152 ms