RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 Q6ZVQ6 151 aa8.68□□□□□ -1.02
HMGA1-204ENST00000401473 NOTCH2NLQ7Z3S9 236 aa8.67□□□□□ -1.02
HMGA1-204ENST00000401473 J3KT08 172 aa8.66□□□□□ -1.02
HMGA1-204ENST00000401473 IGHV6-1A0A0B4J1U7 121 aa8.64□□□□□ -1.03
HMGA1-204ENST00000401473 DSCR10P59022 87 aa8.64□□□□□ -1.03
HMGA1-204ENST00000401473 IGKV3D-7A0A0C4DH55 119 aa8.62□□□□□ -1.03
HMGA1-204ENST00000401473 A0A1B0GVX0 72 aa8.62□□□□□ -1.03
HMGA1-204ENST00000401473 UBL5Q9BZL1 73 aa8.62□□□□□ -1.03
HMGA1-204ENST00000401473 A8MWP4 228 aa8.62□□□□□ -1.03
HMGA1-204ENST00000401473 LINC00313P59037 77 aa8.62□□□□□ -1.03
HMGA1-204ENST00000401473 BPY2O14599 106 aa8.61□□□□□ -1.03
HMGA1-204ENST00000401473 MUC17Q685J3 4493 aa8.6□□□□□ -1.03
HMGA1-204ENST00000401473 SCGB1A1P11684 91 aa8.6□□□□□ -1.03
HMGA1-204ENST00000401473 NDUFB1O75438 58 aa8.59□□□□□ -1.03
HMGA1-204ENST00000401473 MT-ATP8P03928 68 aa8.59□□□□□ -1.03
HMGA1-204ENST00000401473 FAM240AA0A1B0GVK7 77 aa8.58□□□□□ -1.04
HMGA1-204ENST00000401473 KRTAP16-1A8MUX0 517 aa8.57□□□□□ -1.04
HMGA1-204ENST00000401473 K7EQZ3 153 aa8.57□□□□□ -1.04
HMGA1-204ENST00000401473 ACYP1P07311 99 aa8.57□□□□□ -1.04
HMGA1-204ENST00000401473 PRR15Q8IV56 129 aa8.57□□□□□ -1.04
HMGA1-204ENST00000401473 Q8N9L7 120 aa8.55□□□□□ -1.04
HMGA1-204ENST00000401473 C8orf87E5RJ46 101 aa8.54□□□□□ -1.04
HMGA1-204ENST00000401473 RPL37P61927 97 aaKnown RBP8.54□□□□□ -1.04
HMGA1-204ENST00000401473 C20orf166-AS1Q96NR2 134 aa8.53□□□□□ -1.04
HMGA1-204ENST00000401473 Q75L30 129 aa8.53□□□□□ -1.04
HMGA1-204ENST00000401473 C8orf17Q9NRJ1 99 aa8.53□□□□□ -1.04
HMGA1-204ENST00000401473 A8MUU9 505 aa8.51□□□□□ -1.05
HMGA1-204ENST00000401473 SEC61BP60468 96 aaKnown RBP8.51□□□□□ -1.05
HMGA1-204ENST00000401473 PCOTHQ58A44 107 aa8.51□□□□□ -1.05
HMGA1-204ENST00000401473 MMP24-AS1A0A0U1RRL7 71 aa8.49□□□□□ -1.05
HMGA1-204ENST00000401473 KRTAP4-1Q9BYQ7 146 aa8.49□□□□□ -1.05
HMGA1-204ENST00000401473 CXCL6P80162 114 aa8.48□□□□□ -1.05
HMGA1-204ENST00000401473 Q8N9P0 234 aaPredicted RBP8.45□□□□□ -1.06
HMGA1-204ENST00000401473 hDV103S1A0JD37 113 aa8.43□□□□□ -1.06
HMGA1-204ENST00000401473 ATP11AUNQ6ZP68 121 aa8.43□□□□□ -1.06
HMGA1-204ENST00000401473 LINC00643Q86TS7 51 aa8.41□□□□□ -1.06
HMGA1-204ENST00000401473 WFDC13Q8IUB5 93 aa8.4□□□□□ -1.06
HMGA1-204ENST00000401473 TMEM254Q8TBM7 123 aa8.4□□□□□ -1.06
HMGA1-204ENST00000401473 MRPL34Q9BQ48 92 aaKnown RBP8.4□□□□□ -1.06
HMGA1-204ENST00000401473 CASC2Q6XLA1 102 aa8.38□□□□□ -1.07
HMGA1-204ENST00000401473 ATP5EP2Q5VTU8 51 aa8.38□□□□□ -1.07
HMGA1-204ENST00000401473 HCG22E2RYF7 251 aa8.37□□□□□ -1.07
HMGA1-204ENST00000401473 FAT4Q6V0I7 4981 aa8.36□□□□□ -1.07
HMGA1-204ENST00000401473 IMUPQ9GZP8 106 aa8.34□□□□□ -1.07
HMGA1-204ENST00000401473 HIST1H4AP62805 103 aaKnown RBP8.33□□□□□ -1.08
HMGA1-204ENST00000401473 NDUFS5O43920 106 aa8.32□□□□□ -1.08
HMGA1-204ENST00000401473 ZCCHC13Q8WW36 166 aaKnown RBP8.32□□□□□ -1.08
HMGA1-204ENST00000401473 A0A087WVE0 104 aa8.3□□□□□ -1.08
HMGA1-204ENST00000401473 ANAPC13Q9BS18 74 aa8.29□□□□□ -1.08
HMGA1-204ENST00000401473 Q5W150 140 aa8.27□□□□□ -1.09
HMGA1-204ENST00000401473 FAM236AA0A1B0GUQ0 79 aa8.24□□□□□ -1.09
HMGA1-204ENST00000401473 FAM236BA0A1B0GV22 79 aa8.24□□□□□ -1.09
HMGA1-204ENST00000401473 KRTAP19-2Q3LHN2 52 aa8.22□□□□□ -1.09
HMGA1-204ENST00000401473 SPINK7P58062 85 aa8.19□□□□□ -1.1
HMGA1-204ENST00000401473 A0A0U1RQV1 116 aa8.19□□□□□ -1.1
HMGA1-204ENST00000401473 LCE2CQ5TA81 110 aa8.18□□□□□ -1.1
HMGA1-204ENST00000401473 TP53AIP1Q9HCN2 124 aa8.17□□□□□ -1.1
HMGA1-204ENST00000401473 CCDC179H3BU77 68 aa8.16□□□□□ -1.1
HMGA1-204ENST00000401473 HRES1P13985 223 aa8.14□□□□□ -1.11
HMGA1-204ENST00000401473 LCE2AQ5TA79 106 aaPredicted RBP8.12□□□□□ -1.11
HMGA1-204ENST00000401473 ATOX1O00244 68 aa8.11□□□□□ -1.11
HMGA1-204ENST00000401473 MPLKIPQ8TAP9 179 aa8.11□□□□□ -1.11
HMGA1-204ENST00000401473 FLGP20930 4061 aaPredicted RBP8.11□□□□□ -1.11
HMGA1-204ENST00000401473 IGKV2D-30A0A075B6S6 120 aa8.1□□□□□ -1.11
HMGA1-204ENST00000401473 IGKV2-30P06310 120 aa8.1□□□□□ -1.11
HMGA1-204ENST00000401473 OCR1Q9BZK8 76 aa8.09□□□□□ -1.12
HMGA1-204ENST00000401473 UQCRQO14949 82 aa8.06□□□□□ -1.12
HMGA1-204ENST00000401473 C7orf65Q6ZTY9 151 aa8.06□□□□□ -1.12
HMGA1-204ENST00000401473 TRAV22A0A0B4J277 110 aa8.05□□□□□ -1.12
HMGA1-204ENST00000401473 COX7CP15954 63 aa8.04□□□□□ -1.12
HMGA1-204ENST00000401473 COX6B2Q6YFQ2 88 aa8.04□□□□□ -1.12
HMGA1-204ENST00000401473 MT1HP80294 61 aa8.02□□□□□ -1.12
HMGA1-204ENST00000401473 SMIM20Q8N5G0 67 aa8.02□□□□□ -1.12
HMGA1-204ENST00000401473 SERP2Q8N6R1 65 aa8.02□□□□□ -1.12
HMGA1-204ENST00000401473 RBM12B-AS1Q9P1G2 102 aa8.01□□□□□ -1.13
HMGA1-204ENST00000401473 H0Y9P7 68 aa8□□□□□ -1.13
HMGA1-204ENST00000401473 CYP4F30PQ9H0H9 118 aa7.98□□□□□ -1.13
HMGA1-204ENST00000401473 FAM236DA0A1B0GTK5 79 aa7.96□□□□□ -1.14
HMGA1-204ENST00000401473 FAM236CP0DP71 79 aa7.96□□□□□ -1.14
HMGA1-204ENST00000401473 C4orf26Q17RF5 130 aa7.95□□□□□ -1.14
HMGA1-204ENST00000401473 LOC101927531A0A1B0GV80 90 aa7.94□□□□□ -1.14
HMGA1-204ENST00000401473 C5orf47Q569G3 176 aa7.94□□□□□ -1.14
HMGA1-204ENST00000401473 C1orf64Q8NEQ6 169 aa7.93□□□□□ -1.14
HMGA1-204ENST00000401473 LINC00208Q96KT6 92 aa7.93□□□□□ -1.14
HMGA1-204ENST00000401473 CYSTM1Q9H1C7 97 aa7.93□□□□□ -1.14
HMGA1-204ENST00000401473 TRAV7A0A075B6U4 112 aa7.92□□□□□ -1.14
HMGA1-204ENST00000401473 MP68P56378 58 aa7.9□□□□□ -1.14
HMGA1-204ENST00000401473 KRTAP3-1Q9BYR8 98 aa7.88□□□□□ -1.15
HMGA1-204ENST00000401473 KLKP1Q107X0 134 aa7.85□□□□□ -1.15
HMGA1-204ENST00000401473 C20orf197Q8N268 126 aa7.85□□□□□ -1.15
HMGA1-204ENST00000401473 M0R2T5 61 aa7.84□□□□□ -1.15
HMGA1-204ENST00000401473 H3BPC8 53 aa7.83□□□□□ -1.16
HMGA1-204ENST00000401473 H1FX-AS1Q4G0G2 97 aa7.82□□□□□ -1.16
HMGA1-204ENST00000401473 KRTAP10-6P60371 365 aaPredicted RBP7.8□□□□□ -1.16
HMGA1-204ENST00000401473 LORP23490 312 aaPredicted RBP7.79□□□□□ -1.16
HMGA1-204ENST00000401473 TMEM258P61165 79 aa7.79□□□□□ -1.16
HMGA1-204ENST00000401473 SNURFQ9Y675 71 aa7.77□□□□□ -1.17
HMGA1-204ENST00000401473 RPS28P62857 69 aaKnown RBP7.77□□□□□ -1.17
HMGA1-204ENST00000401473 H7BZZ5 65 aa7.75□□□□□ -1.17
HMGA1-204ENST00000401473 NDUFC1O43677 76 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms