RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 MUC17Q685J3 4493 aa11.94□□□□□ -0.5
SHMT1-203ENST00000354098 LINC00313P59037 77 aa11.94□□□□□ -0.5
SHMT1-203ENST00000354098 RNF213Q63HN8 5207 aa11.94□□□□□ -0.5
SHMT1-203ENST00000354098 A8MWP4 228 aa11.92□□□□□ -0.5
SHMT1-203ENST00000354098 SEC61BP60468 96 aaKnown RBP11.92□□□□□ -0.5
SHMT1-203ENST00000354098 IGKV3D-7A0A0C4DH55 119 aa11.91□□□□□ -0.5
SHMT1-203ENST00000354098 RPL37P61927 97 aaKnown RBP11.91□□□□□ -0.5
SHMT1-203ENST00000354098 NDUFB1O75438 58 aa11.9□□□□□ -0.5
SHMT1-203ENST00000354098 UBL5Q9BZL1 73 aa11.88□□□□□ -0.51
SHMT1-203ENST00000354098 KRTAP16-1A8MUX0 517 aa11.87□□□□□ -0.51
SHMT1-203ENST00000354098 BPY2O14599 106 aa11.87□□□□□ -0.51
SHMT1-203ENST00000354098 MUC2Q02817 5179 aa11.87□□□□□ -0.51
SHMT1-203ENST00000354098 PCOTHQ58A44 107 aa11.87□□□□□ -0.51
SHMT1-203ENST00000354098 C8orf87E5RJ46 101 aa11.86□□□□□ -0.51
SHMT1-203ENST00000354098 Q75L30 129 aa11.85□□□□□ -0.51
SHMT1-203ENST00000354098 PRR15Q8IV56 129 aa11.84□□□□□ -0.51
SHMT1-203ENST00000354098 C20orf166-AS1Q96NR2 134 aa11.84□□□□□ -0.51
SHMT1-203ENST00000354098 K7EQZ3 153 aa11.83□□□□□ -0.52
SHMT1-203ENST00000354098 A8MUU9 505 aa11.82□□□□□ -0.52
SHMT1-203ENST00000354098 KRTAP4-1Q9BYQ7 146 aa11.82□□□□□ -0.52
SHMT1-203ENST00000354098 C8orf17Q9NRJ1 99 aa11.81□□□□□ -0.52
SHMT1-203ENST00000354098 Q8N9L7 120 aa11.79□□□□□ -0.52
SHMT1-203ENST00000354098 ACYP1P07311 99 aa11.77□□□□□ -0.53
SHMT1-203ENST00000354098 FAM240AA0A1B0GVK7 77 aa11.75□□□□□ -0.53
SHMT1-203ENST00000354098 ATP11AUNQ6ZP68 121 aa11.75□□□□□ -0.53
SHMT1-203ENST00000354098 MMP24-AS1A0A0U1RRL7 71 aa11.74□□□□□ -0.53
SHMT1-203ENST00000354098 Q8N9P0 234 aaPredicted RBP11.67□□□□□ -0.54
SHMT1-203ENST00000354098 CXCL6P80162 114 aa11.66□□□□□ -0.54
SHMT1-203ENST00000354098 hDV103S1A0JD37 113 aa11.65□□□□□ -0.54
SHMT1-203ENST00000354098 TMEM254Q8TBM7 123 aa11.64□□□□□ -0.55
SHMT1-203ENST00000354098 MRPL34Q9BQ48 92 aaKnown RBP11.63□□□□□ -0.55
SHMT1-203ENST00000354098 WFDC13Q8IUB5 93 aa11.62□□□□□ -0.55
SHMT1-203ENST00000354098 J3QR89 54 aa11.59□□□□□ -0.55
SHMT1-203ENST00000354098 CASC2Q6XLA1 102 aa11.59□□□□□ -0.55
SHMT1-203ENST00000354098 HCG22E2RYF7 251 aa11.55□□□□□ -0.56
SHMT1-203ENST00000354098 ZCCHC13Q8WW36 166 aaKnown RBP11.55□□□□□ -0.56
SHMT1-203ENST00000354098 LINC00643Q86TS7 51 aa11.54□□□□□ -0.56
SHMT1-203ENST00000354098 NDUFS5O43920 106 aa11.53□□□□□ -0.56
SHMT1-203ENST00000354098 ATP5EP2Q5VTU8 51 aa11.53□□□□□ -0.56
SHMT1-203ENST00000354098 A0A0U1RQV1 116 aa11.48□□□□□ -0.57
SHMT1-203ENST00000354098 HIST1H4AP62805 103 aaKnown RBP11.46□□□□□ -0.57
SHMT1-203ENST00000354098 KRTAP19-2Q3LHN2 52 aa11.44□□□□□ -0.58
SHMT1-203ENST00000354098 FAT4Q6V0I7 4981 aa11.43□□□□□ -0.58
SHMT1-203ENST00000354098 K7ERU9 68 aa11.43□□□□□ -0.58
SHMT1-203ENST00000354098 Q5W150 140 aa11.4□□□□□ -0.58
SHMT1-203ENST00000354098 A0A087WVE0 104 aa11.39□□□□□ -0.59
SHMT1-203ENST00000354098 LCE2CQ5TA81 110 aa11.38□□□□□ -0.59
SHMT1-203ENST00000354098 SPINK7P58062 85 aa11.36□□□□□ -0.59
SHMT1-203ENST00000354098 HRES1P13985 223 aa11.32□□□□□ -0.6
SHMT1-203ENST00000354098 TP53AIP1Q9HCN2 124 aa11.28□□□□□ -0.6
SHMT1-203ENST00000354098 LCE2AQ5TA79 106 aaPredicted RBP11.27□□□□□ -0.6
SHMT1-203ENST00000354098 COX6B2Q6YFQ2 88 aa11.27□□□□□ -0.6
SHMT1-203ENST00000354098 MPLKIPQ8TAP9 179 aa11.24□□□□□ -0.61
SHMT1-203ENST00000354098 IGKV2D-30A0A075B6S6 120 aa11.24□□□□□ -0.61
SHMT1-203ENST00000354098 MT-ATP8P03928 68 aa11.24□□□□□ -0.61
SHMT1-203ENST00000354098 IGKV2-30P06310 120 aa11.24□□□□□ -0.61
SHMT1-203ENST00000354098 MT1HP80294 61 aa11.19□□□□□ -0.62
SHMT1-203ENST00000354098 RBM12B-AS1Q9P1G2 102 aa11.18□□□□□ -0.62
SHMT1-203ENST00000354098 C7orf65Q6ZTY9 151 aa11.17□□□□□ -0.62
SHMT1-203ENST00000354098 FAM236DA0A1B0GTK5 79 aa11.14□□□□□ -0.63
SHMT1-203ENST00000354098 FAM236CP0DP71 79 aa11.14□□□□□ -0.63
SHMT1-203ENST00000354098 IMUPQ9GZP8 106 aa11.14□□□□□ -0.63
SHMT1-203ENST00000354098 TRAV22A0A0B4J277 110 aa11.11□□□□□ -0.63
SHMT1-203ENST00000354098 UQCRQO14949 82 aa11.11□□□□□ -0.63
SHMT1-203ENST00000354098 OCR1Q9BZK8 76 aa11.08□□□□□ -0.64
SHMT1-203ENST00000354098 FLGP20930 4061 aaPredicted RBP11.07□□□□□ -0.64
SHMT1-203ENST00000354098 H0Y9P7 68 aa11.04□□□□□ -0.64
SHMT1-203ENST00000354098 SCGB1A1P11684 91 aa11.04□□□□□ -0.64
SHMT1-203ENST00000354098 M0R2T5 61 aa11.01□□□□□ -0.65
SHMT1-203ENST00000354098 C4orf26Q17RF5 130 aa11.01□□□□□ -0.65
SHMT1-203ENST00000354098 CYP4F30PQ9H0H9 118 aa11□□□□□ -0.65
SHMT1-203ENST00000354098 LOC101927531A0A1B0GV80 90 aa10.98□□□□□ -0.65
SHMT1-203ENST00000354098 FAM236AA0A1B0GUQ0 79 aa10.98□□□□□ -0.65
SHMT1-203ENST00000354098 FAM236BA0A1B0GV22 79 aa10.98□□□□□ -0.65
SHMT1-203ENST00000354098 ATOX1O00244 68 aa10.98□□□□□ -0.65
SHMT1-203ENST00000354098 C1orf64Q8NEQ6 169 aa10.92□□□□□ -0.66
SHMT1-203ENST00000354098 LINC00208Q96KT6 92 aa10.92□□□□□ -0.66
SHMT1-203ENST00000354098 C5orf47Q569G3 176 aa10.92□□□□□ -0.66
SHMT1-203ENST00000354098 MP68P56378 58 aa10.9□□□□□ -0.66
SHMT1-203ENST00000354098 H1FX-AS1Q4G0G2 97 aa10.89□□□□□ -0.67
SHMT1-203ENST00000354098 KRTAP10-6P60371 365 aaPredicted RBP10.88□□□□□ -0.67
SHMT1-203ENST00000354098 KRTAP3-1Q9BYR8 98 aa10.87□□□□□ -0.67
SHMT1-203ENST00000354098 LORP23490 312 aaPredicted RBP10.85□□□□□ -0.67
SHMT1-203ENST00000354098 TRAV7A0A075B6U4 112 aa10.82□□□□□ -0.68
SHMT1-203ENST00000354098 SMIM20Q8N5G0 67 aa10.82□□□□□ -0.68
SHMT1-203ENST00000354098 KLKP1Q107X0 134 aa10.81□□□□□ -0.68
SHMT1-203ENST00000354098 H3BPC8 53 aa10.79□□□□□ -0.68
SHMT1-203ENST00000354098 KRTAP9-8Q9BYQ0 159 aa10.67□□□□□ -0.7
SHMT1-203ENST00000354098 SERP2Q8N6R1 65 aa10.66□□□□□ -0.7
SHMT1-203ENST00000354098 S4R3F8 94 aa10.63□□□□□ -0.71
SHMT1-203ENST00000354098 PCP4P48539 62 aa10.62□□□□□ -0.71
SHMT1-203ENST00000354098 LCA10Q71F78 164 aa10.6□□□□□ -0.71
SHMT1-203ENST00000354098 SNURFQ9Y675 71 aa10.6□□□□□ -0.71
SHMT1-203ENST00000354098 MT2AP02795 61 aa10.57□□□□□ -0.72
SHMT1-203ENST00000354098 C20orf197Q8N268 126 aa10.56□□□□□ -0.72
SHMT1-203ENST00000354098 A8MUN3 132 aa10.54□□□□□ -0.72
SHMT1-203ENST00000354098 KRTAP3-3Q9BYR6 98 aa10.53□□□□□ -0.72
SHMT1-203ENST00000354098 MT1FP04733 61 aa10.5□□□□□ -0.73
SHMT1-203ENST00000354098 KRTAP9-2Q9BYQ4 174 aa10.5□□□□□ -0.73
SHMT1-203ENST00000354098 COX7CP15954 63 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms