RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 NDUFB1O75438 58 aa9.5□□□□□ -0.89
PDLIM1-201ENST00000329399 LIMD2Q9BT23 127 aa9.5□□□□□ -0.89
PDLIM1-201ENST00000329399 A0A087WVE0 104 aa9.49□□□□□ -0.89
PDLIM1-201ENST00000329399 RPS29P62273 56 aaKnown RBP9.49□□□□□ -0.89
PDLIM1-201ENST00000329399 HRCT1Q6UXD1 115 aa9.49□□□□□ -0.89
PDLIM1-201ENST00000329399 ANAPC13Q9BS18 74 aa9.49□□□□□ -0.89
PDLIM1-201ENST00000329399 A8MWP4 228 aa9.48□□□□□ -0.89
PDLIM1-201ENST00000329399 SPINK1P00995 79 aa9.48□□□□□ -0.89
PDLIM1-201ENST00000329399 PRR15Q8IV56 129 aa9.45□□□□□ -0.9
PDLIM1-201ENST00000329399 Q96NJ1 140 aa9.45□□□□□ -0.9
PDLIM1-201ENST00000329399 K7EQZ3 153 aa9.43□□□□□ -0.9
PDLIM1-201ENST00000329399 RNF213Q63HN8 5207 aa9.41□□□□□ -0.9
PDLIM1-201ENST00000329399 Q8N9L7 120 aa9.41□□□□□ -0.9
PDLIM1-201ENST00000329399 HCG22E2RYF7 251 aa9.4□□□□□ -0.9
PDLIM1-201ENST00000329399 DEFB116Q30KQ4 102 aa9.4□□□□□ -0.9
PDLIM1-201ENST00000329399 LINC00304Q8N9R0 145 aa9.4□□□□□ -0.9
PDLIM1-201ENST00000329399 SERP2Q8N6R1 65 aa9.39□□□□□ -0.91
PDLIM1-201ENST00000329399 TRAV7A0A075B6U4 112 aa9.37□□□□□ -0.91
PDLIM1-201ENST00000329399 A0A1B0GVX0 72 aa9.36□□□□□ -0.91
PDLIM1-201ENST00000329399 UQCRQO14949 82 aa9.35□□□□□ -0.91
PDLIM1-201ENST00000329399 COX7CP15954 63 aa9.35□□□□□ -0.91
PDLIM1-201ENST00000329399 C8orf87E5RJ46 101 aa9.33□□□□□ -0.92
PDLIM1-201ENST00000329399 PRR4Q16378 134 aa9.33□□□□□ -0.92
PDLIM1-201ENST00000329399 C1orf195Q5TG92 126 aa9.33□□□□□ -0.92
PDLIM1-201ENST00000329399 CASC2Q6XLA1 102 aa9.32□□□□□ -0.92
PDLIM1-201ENST00000329399 RETNLBQ9BQ08 111 aa9.32□□□□□ -0.92
PDLIM1-201ENST00000329399 C8orf17Q9NRJ1 99 aa9.29□□□□□ -0.92
PDLIM1-201ENST00000329399 MMP24-AS1A0A0U1RRL7 71 aa9.28□□□□□ -0.92
PDLIM1-201ENST00000329399 hDV103S1A0JD37 113 aa9.28□□□□□ -0.92
PDLIM1-201ENST00000329399 OCR1Q9BZK8 76 aa9.28□□□□□ -0.92
PDLIM1-201ENST00000329399 IGHV6-1A0A0B4J1U7 121 aa9.27□□□□□ -0.93
PDLIM1-201ENST00000329399 TMEM254Q8TBM7 123 aa9.26□□□□□ -0.93
PDLIM1-201ENST00000329399 WFDC13Q8IUB5 93 aa9.25□□□□□ -0.93
PDLIM1-201ENST00000329399 TP53AIP1Q9HCN2 124 aa9.24□□□□□ -0.93
PDLIM1-201ENST00000329399 C5orf47Q569G3 176 aa9.22□□□□□ -0.93
PDLIM1-201ENST00000329399 MUC2Q02817 5179 aa9.22□□□□□ -0.93
PDLIM1-201ENST00000329399 LINC00313P59037 77 aa9.21□□□□□ -0.93
PDLIM1-201ENST00000329399 MRPL34Q9BQ48 92 aaKnown RBP9.21□□□□□ -0.94
PDLIM1-201ENST00000329399 CCDC179H3BU77 68 aa9.2□□□□□ -0.94
PDLIM1-201ENST00000329399 H3BPC8 53 aa9.16□□□□□ -0.94
PDLIM1-201ENST00000329399 KLKP1Q107X0 134 aa9.15□□□□□ -0.94
PDLIM1-201ENST00000329399 IGLV7-46A0A075B6I9 117 aa9.15□□□□□ -0.95
PDLIM1-201ENST00000329399 NDUFC1O43677 76 aa9.14□□□□□ -0.95
PDLIM1-201ENST00000329399 MP68P56378 58 aa9.14□□□□□ -0.95
PDLIM1-201ENST00000329399 C20orf197Q8N268 126 aa9.12□□□□□ -0.95
PDLIM1-201ENST00000329399 FP248Q71RG6 208 aaPredicted RBP9.11□□□□□ -0.95
PDLIM1-201ENST00000329399 NOTCH2NLQ7Z3S9 236 aa9.1□□□□□ -0.95
PDLIM1-201ENST00000329399 Q8N9P0 234 aaPredicted RBP9.1□□□□□ -0.95
PDLIM1-201ENST00000329399 NDUFS5O43920 106 aa9.08□□□□□ -0.96
PDLIM1-201ENST00000329399 TRAV22A0A0B4J277 110 aa9.08□□□□□ -0.96
PDLIM1-201ENST00000329399 A0A0U1RQV1 116 aa9.08□□□□□ -0.96
PDLIM1-201ENST00000329399 TPRXLQ17RH7 258 aa9.08□□□□□ -0.96
PDLIM1-201ENST00000329399 MUC17Q685J3 4493 aa9.07□□□□□ -0.96
PDLIM1-201ENST00000329399 KRTAP16-1A8MUX0 517 aa9.04□□□□□ -0.96
PDLIM1-201ENST00000329399 H0Y9P7 68 aa9.04□□□□□ -0.96
PDLIM1-201ENST00000329399 KRTAP13-3Q3SY46 172 aa9.04□□□□□ -0.96
PDLIM1-201ENST00000329399 TMEM258P61165 79 aa9.02□□□□□ -0.97
PDLIM1-201ENST00000329399 ZCCHC13Q8WW36 166 aaKnown RBP9.01□□□□□ -0.97
PDLIM1-201ENST00000329399 SNURFQ9Y675 71 aa9□□□□□ -0.97
PDLIM1-201ENST00000329399 LINC00208Q96KT6 92 aa8.97□□□□□ -0.97
PDLIM1-201ENST00000329399 H7BZZ5 65 aa8.96□□□□□ -0.97
PDLIM1-201ENST00000329399 C1orf64Q8NEQ6 169 aa8.96□□□□□ -0.97
PDLIM1-201ENST00000329399 LOC101927531A0A1B0GV80 90 aa8.96□□□□□ -0.98
PDLIM1-201ENST00000329399 ATP5EP56381 51 aaPredicted RBP8.96□□□□□ -0.98
PDLIM1-201ENST00000329399 C20orf166-AS1Q96NR2 134 aa8.94□□□□□ -0.98
PDLIM1-201ENST00000329399 A8MUU9 505 aa8.93□□□□□ -0.98
PDLIM1-201ENST00000329399 CYSTM1Q9H1C7 97 aa8.92□□□□□ -0.98
PDLIM1-201ENST00000329399 FAT4Q6V0I7 4981 aa8.92□□□□□ -0.98
PDLIM1-201ENST00000329399 Q75L30 129 aa8.89□□□□□ -0.99
PDLIM1-201ENST00000329399 XP32Q5T750 250 aa8.88□□□□□ -0.99
PDLIM1-201ENST00000329399 Q5W150 140 aa8.88□□□□□ -0.99
PDLIM1-201ENST00000329399 KRTAP4-1Q9BYQ7 146 aa8.88□□□□□ -0.99
PDLIM1-201ENST00000329399 C9orf92A6NGG3 77 aa8.87□□□□□ -0.99
PDLIM1-201ENST00000329399 SPANXA2-OT1Q8N9U9 137 aa8.87□□□□□ -0.99
PDLIM1-201ENST00000329399 FAM236DA0A1B0GTK5 79 aa8.85□□□□□ -0.99
PDLIM1-201ENST00000329399 FAM236CP0DP71 79 aa8.85□□□□□ -0.99
PDLIM1-201ENST00000329399 CYP4F30PQ9H0H9 118 aa8.82□□□□□ -1
PDLIM1-201ENST00000329399 IGKV2-30P06310 120 aa8.81□□□□□ -1
PDLIM1-201ENST00000329399 RPS28P62857 69 aaKnown RBP8.79□□□□□ -1
PDLIM1-201ENST00000329399 SEC61BP60468 96 aaKnown RBP8.75□□□□□ -1.01
PDLIM1-201ENST00000329399 RPL37P61927 97 aaKnown RBP8.75□□□□□ -1.01
PDLIM1-201ENST00000329399 ATP11AUNQ6ZP68 121 aa8.75□□□□□ -1.01
PDLIM1-201ENST00000329399 C7orf65Q6ZTY9 151 aa8.75□□□□□ -1.01
PDLIM1-201ENST00000329399 PCOTHQ58A44 107 aa8.72□□□□□ -1.01
PDLIM1-201ENST00000329399 SERP1Q9Y6X1 66 aa8.72□□□□□ -1.01
PDLIM1-201ENST00000329399 IGKV2D-30A0A075B6S6 120 aa8.69□□□□□ -1.02
PDLIM1-201ENST00000329399 LCE2AQ5TA79 106 aaPredicted RBP8.68□□□□□ -1.02
PDLIM1-201ENST00000329399 HRES1P13985 223 aa8.64□□□□□ -1.03
PDLIM1-201ENST00000329399 SPINK7P58062 85 aa8.6□□□□□ -1.03
PDLIM1-201ENST00000329399 KRTAP19-2Q3LHN2 52 aa8.6□□□□□ -1.03
PDLIM1-201ENST00000329399 LCE2CQ5TA81 110 aa8.59□□□□□ -1.03
PDLIM1-201ENST00000329399 A8MUN3 132 aa8.58□□□□□ -1.04
PDLIM1-201ENST00000329399 ACYP2P14621 99 aa8.58□□□□□ -1.04
PDLIM1-201ENST00000329399 DMAC1Q96GE9 116 aa8.57□□□□□ -1.04
PDLIM1-201ENST00000329399 SMIM26A0A096LP01 95 aa8.51□□□□□ -1.05
PDLIM1-201ENST00000329399 COA5Q86WW8 74 aa8.49□□□□□ -1.05
PDLIM1-201ENST00000329399 FLGP20930 4061 aaPredicted RBP8.45□□□□□ -1.06
PDLIM1-201ENST00000329399 C4orf26Q17RF5 130 aa8.44□□□□□ -1.06
PDLIM1-201ENST00000329399 COX6B2Q6YFQ2 88 aa8.44□□□□□ -1.06
PDLIM1-201ENST00000329399 MT1HP80294 61 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms