RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 LINC00846Q9NV44 126 aa13.27□□□□□ -0.29
HOXC9-201ENST00000303450 SEC61BP60468 96 aaKnown RBP13.25□□□□□ -0.29
HOXC9-201ENST00000303450 UBL5Q9BZL1 73 aa13.25□□□□□ -0.29
HOXC9-201ENST00000303450 A8MWP4 228 aa13.24□□□□□ -0.29
HOXC9-201ENST00000303450 BPY2O14599 106 aa13.22□□□□□ -0.29
HOXC9-201ENST00000303450 MUC17Q685J3 4493 aa13.21□□□□□ -0.29
HOXC9-201ENST00000303450 C8orf87E5RJ46 101 aa13.2□□□□□ -0.3
HOXC9-201ENST00000303450 RPL37P61927 97 aaKnown RBP13.2□□□□□ -0.3
HOXC9-201ENST00000303450 NOTCH2NLQ7Z3S9 236 aa13.2□□□□□ -0.3
HOXC9-201ENST00000303450 IGKV3D-7A0A0C4DH55 119 aa13.18□□□□□ -0.3
HOXC9-201ENST00000303450 RNF213Q63HN8 5207 aa13.18□□□□□ -0.3
HOXC9-201ENST00000303450 Q75L30 129 aa13.15□□□□□ -0.3
HOXC9-201ENST00000303450 PRR15Q8IV56 129 aa13.15□□□□□ -0.3
HOXC9-201ENST00000303450 ACYP1P07311 99 aa13.13□□□□□ -0.31
HOXC9-201ENST00000303450 KRTAP16-1A8MUX0 517 aa13.13□□□□□ -0.31
HOXC9-201ENST00000303450 PCOTHQ58A44 107 aa13.13□□□□□ -0.31
HOXC9-201ENST00000303450 C20orf166-AS1Q96NR2 134 aa13.13□□□□□ -0.31
HOXC9-201ENST00000303450 K7EQZ3 153 aa13.11□□□□□ -0.31
HOXC9-201ENST00000303450 FAM240AA0A1B0GVK7 77 aa13.1□□□□□ -0.31
HOXC9-201ENST00000303450 A8MUU9 505 aa13.1□□□□□ -0.31
HOXC9-201ENST00000303450 C8orf17Q9NRJ1 99 aa13.1□□□□□ -0.31
HOXC9-201ENST00000303450 ATP11AUNQ6ZP68 121 aa13.07□□□□□ -0.32
HOXC9-201ENST00000303450 Q8N9L7 120 aa13.04□□□□□ -0.32
HOXC9-201ENST00000303450 MUC2Q02817 5179 aa13.03□□□□□ -0.32
HOXC9-201ENST00000303450 MMP24-AS1A0A0U1RRL7 71 aa13□□□□□ -0.33
HOXC9-201ENST00000303450 CXCL6P80162 114 aa12.99□□□□□ -0.33
HOXC9-201ENST00000303450 J3QR89 54 aa12.98□□□□□ -0.33
HOXC9-201ENST00000303450 KRTAP4-1Q9BYQ7 146 aa12.97□□□□□ -0.33
HOXC9-201ENST00000303450 hDV103S1A0JD37 113 aa12.96□□□□□ -0.33
HOXC9-201ENST00000303450 TMEM254Q8TBM7 123 aa12.94□□□□□ -0.34
HOXC9-201ENST00000303450 Q8N9P0 234 aaPredicted RBP12.93□□□□□ -0.34
HOXC9-201ENST00000303450 MRPL34Q9BQ48 92 aaKnown RBP12.93□□□□□ -0.34
HOXC9-201ENST00000303450 WFDC13Q8IUB5 93 aa12.9□□□□□ -0.34
HOXC9-201ENST00000303450 ATP5EP2Q5VTU8 51 aa12.88□□□□□ -0.35
HOXC9-201ENST00000303450 CASC2Q6XLA1 102 aa12.88□□□□□ -0.35
HOXC9-201ENST00000303450 HCG22E2RYF7 251 aa12.85□□□□□ -0.35
HOXC9-201ENST00000303450 LINC00643Q86TS7 51 aa12.85□□□□□ -0.35
HOXC9-201ENST00000303450 NDUFS5O43920 106 aa12.83□□□□□ -0.35
HOXC9-201ENST00000303450 A0A0U1RQV1 116 aa12.82□□□□□ -0.36
HOXC9-201ENST00000303450 ZCCHC13Q8WW36 166 aaKnown RBP12.82□□□□□ -0.36
HOXC9-201ENST00000303450 K7ERU9 68 aa12.76□□□□□ -0.37
HOXC9-201ENST00000303450 HIST1H4AP62805 103 aaKnown RBP12.76□□□□□ -0.37
HOXC9-201ENST00000303450 FAT4Q6V0I7 4981 aa12.62□□□□□ -0.39
HOXC9-201ENST00000303450 A0A087WVE0 104 aa12.61□□□□□ -0.39
HOXC9-201ENST00000303450 SPINK7P58062 85 aa12.6□□□□□ -0.39
HOXC9-201ENST00000303450 Q5W150 140 aa12.6□□□□□ -0.39
HOXC9-201ENST00000303450 TP53AIP1Q9HCN2 124 aa12.58□□□□□ -0.4
HOXC9-201ENST00000303450 KRTAP19-2Q3LHN2 52 aa12.56□□□□□ -0.4
HOXC9-201ENST00000303450 COX6B2Q6YFQ2 88 aa12.54□□□□□ -0.4
HOXC9-201ENST00000303450 HRES1P13985 223 aa12.51□□□□□ -0.41
HOXC9-201ENST00000303450 LCE2CQ5TA81 110 aa12.5□□□□□ -0.41
HOXC9-201ENST00000303450 IGKV2D-30A0A075B6S6 120 aa12.47□□□□□ -0.41
HOXC9-201ENST00000303450 IGKV2-30P06310 120 aa12.47□□□□□ -0.41
HOXC9-201ENST00000303450 MT-ATP8P03928 68 aa12.47□□□□□ -0.41
HOXC9-201ENST00000303450 RBM12B-AS1Q9P1G2 102 aa12.46□□□□□ -0.42
HOXC9-201ENST00000303450 C7orf65Q6ZTY9 151 aa12.45□□□□□ -0.42
HOXC9-201ENST00000303450 IMUPQ9GZP8 106 aa12.43□□□□□ -0.42
HOXC9-201ENST00000303450 MPLKIPQ8TAP9 179 aa12.42□□□□□ -0.42
HOXC9-201ENST00000303450 FAM236DA0A1B0GTK5 79 aa12.4□□□□□ -0.42
HOXC9-201ENST00000303450 FAM236CP0DP71 79 aa12.4□□□□□ -0.42
HOXC9-201ENST00000303450 LCE2AQ5TA79 106 aaPredicted RBP12.39□□□□□ -0.43
HOXC9-201ENST00000303450 UQCRQO14949 82 aa12.38□□□□□ -0.43
HOXC9-201ENST00000303450 TRAV22A0A0B4J277 110 aa12.37□□□□□ -0.43
HOXC9-201ENST00000303450 SCGB1A1P11684 91 aa12.33□□□□□ -0.44
HOXC9-201ENST00000303450 MT1HP80294 61 aa12.32□□□□□ -0.44
HOXC9-201ENST00000303450 FLGP20930 4061 aaPredicted RBP12.31□□□□□ -0.44
HOXC9-201ENST00000303450 OCR1Q9BZK8 76 aa12.3□□□□□ -0.44
HOXC9-201ENST00000303450 H0Y9P7 68 aa12.28□□□□□ -0.44
HOXC9-201ENST00000303450 ATOX1O00244 68 aa12.27□□□□□ -0.45
HOXC9-201ENST00000303450 LOC101927531A0A1B0GV80 90 aa12.24□□□□□ -0.45
HOXC9-201ENST00000303450 FAM236AA0A1B0GUQ0 79 aa12.22□□□□□ -0.45
HOXC9-201ENST00000303450 FAM236BA0A1B0GV22 79 aa12.22□□□□□ -0.45
HOXC9-201ENST00000303450 M0R2T5 61 aa12.21□□□□□ -0.45
HOXC9-201ENST00000303450 CYP4F30PQ9H0H9 118 aa12.21□□□□□ -0.46
HOXC9-201ENST00000303450 MP68P56378 58 aa12.18□□□□□ -0.46
HOXC9-201ENST00000303450 C4orf26Q17RF5 130 aa12.18□□□□□ -0.46
HOXC9-201ENST00000303450 C5orf47Q569G3 176 aa12.17□□□□□ -0.46
HOXC9-201ENST00000303450 C1orf64Q8NEQ6 169 aa12.15□□□□□ -0.46
HOXC9-201ENST00000303450 LINC00208Q96KT6 92 aa12.14□□□□□ -0.47
HOXC9-201ENST00000303450 SMIM20Q8N5G0 67 aa12.11□□□□□ -0.47
HOXC9-201ENST00000303450 H1FX-AS1Q4G0G2 97 aa12.08□□□□□ -0.48
HOXC9-201ENST00000303450 TRAV7A0A075B6U4 112 aa12.06□□□□□ -0.48
HOXC9-201ENST00000303450 H3BPC8 53 aa12.06□□□□□ -0.48
HOXC9-201ENST00000303450 KRTAP10-6P60371 365 aaPredicted RBP12□□□□□ -0.49
HOXC9-201ENST00000303450 KRTAP3-1Q9BYR8 98 aa11.98□□□□□ -0.49
HOXC9-201ENST00000303450 KLKP1Q107X0 134 aa11.96□□□□□ -0.49
HOXC9-201ENST00000303450 LORP23490 312 aaPredicted RBP11.96□□□□□ -0.5
HOXC9-201ENST00000303450 SERP2Q8N6R1 65 aa11.87□□□□□ -0.51
HOXC9-201ENST00000303450 S4R3F8 94 aa11.82□□□□□ -0.52
HOXC9-201ENST00000303450 A8MUN3 132 aa11.78□□□□□ -0.52
HOXC9-201ENST00000303450 SNURFQ9Y675 71 aa11.76□□□□□ -0.53
HOXC9-201ENST00000303450 C20orf197Q8N268 126 aa11.75□□□□□ -0.53
HOXC9-201ENST00000303450 KRTAP9-8Q9BYQ0 159 aa11.75□□□□□ -0.53
HOXC9-201ENST00000303450 LCA10Q71F78 164 aa11.74□□□□□ -0.53
HOXC9-201ENST00000303450 COX7CP15954 63 aa11.68□□□□□ -0.54
HOXC9-201ENST00000303450 CSAG1Q6PB30 78 aa11.66□□□□□ -0.54
HOXC9-201ENST00000303450 MT2AP02795 61 aa11.65□□□□□ -0.54
HOXC9-201ENST00000303450 DMAC1Q96GE9 116 aa11.64□□□□□ -0.55
HOXC9-201ENST00000303450 ANAPC13Q9BS18 74 aa11.6□□□□□ -0.55
HOXC9-201ENST00000303450 KRTAP3-3Q9BYR6 98 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms