RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 LINC00846Q9NV44 126 aa13.27□□□□□ -0.29
HOXC9-201ENST00000303450 SEC61BP60468 96 aaKnown RBP13.25□□□□□ -0.29
HOXC9-201ENST00000303450 UBL5Q9BZL1 73 aa13.25□□□□□ -0.29
HOXC9-201ENST00000303450 A8MWP4 228 aa13.24□□□□□ -0.29
HOXC9-201ENST00000303450 BPY2O14599 106 aa13.22□□□□□ -0.29
HOXC9-201ENST00000303450 MUC17Q685J3 4493 aa13.21□□□□□ -0.29
HOXC9-201ENST00000303450 C8orf87E5RJ46 101 aa13.2□□□□□ -0.3
HOXC9-201ENST00000303450 RPL37P61927 97 aaKnown RBP13.2□□□□□ -0.3
HOXC9-201ENST00000303450 NOTCH2NLQ7Z3S9 236 aa13.2□□□□□ -0.3
HOXC9-201ENST00000303450 IGKV3D-7A0A0C4DH55 119 aa13.18□□□□□ -0.3
HOXC9-201ENST00000303450 RNF213Q63HN8 5207 aa13.18□□□□□ -0.3
HOXC9-201ENST00000303450 Q75L30 129 aa13.15□□□□□ -0.3
HOXC9-201ENST00000303450 PRR15Q8IV56 129 aa13.15□□□□□ -0.3
HOXC9-201ENST00000303450 ACYP1P07311 99 aa13.13□□□□□ -0.31
HOXC9-201ENST00000303450 KRTAP16-1A8MUX0 517 aa13.13□□□□□ -0.31
HOXC9-201ENST00000303450 PCOTHQ58A44 107 aa13.13□□□□□ -0.31
HOXC9-201ENST00000303450 C20orf166-AS1Q96NR2 134 aa13.13□□□□□ -0.31
HOXC9-201ENST00000303450 K7EQZ3 153 aa13.11□□□□□ -0.31
HOXC9-201ENST00000303450 FAM240AA0A1B0GVK7 77 aa13.1□□□□□ -0.31
HOXC9-201ENST00000303450 A8MUU9 505 aa13.1□□□□□ -0.31
HOXC9-201ENST00000303450 C8orf17Q9NRJ1 99 aa13.1□□□□□ -0.31
HOXC9-201ENST00000303450 ATP11AUNQ6ZP68 121 aa13.07□□□□□ -0.32
HOXC9-201ENST00000303450 Q8N9L7 120 aa13.04□□□□□ -0.32
HOXC9-201ENST00000303450 MUC2Q02817 5179 aa13.03□□□□□ -0.32
HOXC9-201ENST00000303450 MMP24-AS1A0A0U1RRL7 71 aa13□□□□□ -0.33
HOXC9-201ENST00000303450 CXCL6P80162 114 aa12.99□□□□□ -0.33
HOXC9-201ENST00000303450 J3QR89 54 aa12.98□□□□□ -0.33
HOXC9-201ENST00000303450 KRTAP4-1Q9BYQ7 146 aa12.97□□□□□ -0.33
HOXC9-201ENST00000303450 hDV103S1A0JD37 113 aa12.96□□□□□ -0.33
HOXC9-201ENST00000303450 TMEM254Q8TBM7 123 aa12.94□□□□□ -0.34
HOXC9-201ENST00000303450 Q8N9P0 234 aaPredicted RBP12.93□□□□□ -0.34
HOXC9-201ENST00000303450 MRPL34Q9BQ48 92 aaKnown RBP12.93□□□□□ -0.34
HOXC9-201ENST00000303450 WFDC13Q8IUB5 93 aa12.9□□□□□ -0.34
HOXC9-201ENST00000303450 ATP5EP2Q5VTU8 51 aa12.88□□□□□ -0.35
HOXC9-201ENST00000303450 CASC2Q6XLA1 102 aa12.88□□□□□ -0.35
HOXC9-201ENST00000303450 HCG22E2RYF7 251 aa12.85□□□□□ -0.35
HOXC9-201ENST00000303450 LINC00643Q86TS7 51 aa12.85□□□□□ -0.35
HOXC9-201ENST00000303450 NDUFS5O43920 106 aa12.83□□□□□ -0.35
HOXC9-201ENST00000303450 A0A0U1RQV1 116 aa12.82□□□□□ -0.36
HOXC9-201ENST00000303450 ZCCHC13Q8WW36 166 aaKnown RBP12.82□□□□□ -0.36
HOXC9-201ENST00000303450 K7ERU9 68 aa12.76□□□□□ -0.37
HOXC9-201ENST00000303450 HIST1H4AP62805 103 aaKnown RBP12.76□□□□□ -0.37
HOXC9-201ENST00000303450 FAT4Q6V0I7 4981 aa12.62□□□□□ -0.39
HOXC9-201ENST00000303450 A0A087WVE0 104 aa12.61□□□□□ -0.39
HOXC9-201ENST00000303450 SPINK7P58062 85 aa12.6□□□□□ -0.39
HOXC9-201ENST00000303450 Q5W150 140 aa12.6□□□□□ -0.39
HOXC9-201ENST00000303450 TP53AIP1Q9HCN2 124 aa12.58□□□□□ -0.4
HOXC9-201ENST00000303450 KRTAP19-2Q3LHN2 52 aa12.56□□□□□ -0.4
HOXC9-201ENST00000303450 COX6B2Q6YFQ2 88 aa12.54□□□□□ -0.4
HOXC9-201ENST00000303450 HRES1P13985 223 aa12.51□□□□□ -0.41
HOXC9-201ENST00000303450 LCE2CQ5TA81 110 aa12.5□□□□□ -0.41
HOXC9-201ENST00000303450 IGKV2D-30A0A075B6S6 120 aa12.47□□□□□ -0.41
HOXC9-201ENST00000303450 IGKV2-30P06310 120 aa12.47□□□□□ -0.41
HOXC9-201ENST00000303450 MT-ATP8P03928 68 aa12.47□□□□□ -0.41
HOXC9-201ENST00000303450 RBM12B-AS1Q9P1G2 102 aa12.46□□□□□ -0.42
HOXC9-201ENST00000303450 C7orf65Q6ZTY9 151 aa12.45□□□□□ -0.42
HOXC9-201ENST00000303450 IMUPQ9GZP8 106 aa12.43□□□□□ -0.42
HOXC9-201ENST00000303450 MPLKIPQ8TAP9 179 aa12.42□□□□□ -0.42
HOXC9-201ENST00000303450 FAM236DA0A1B0GTK5 79 aa12.4□□□□□ -0.42
HOXC9-201ENST00000303450 FAM236CP0DP71 79 aa12.4□□□□□ -0.42
HOXC9-201ENST00000303450 LCE2AQ5TA79 106 aaPredicted RBP12.39□□□□□ -0.43
HOXC9-201ENST00000303450 UQCRQO14949 82 aa12.38□□□□□ -0.43
HOXC9-201ENST00000303450 TRAV22A0A0B4J277 110 aa12.37□□□□□ -0.43
HOXC9-201ENST00000303450 SCGB1A1P11684 91 aa12.33□□□□□ -0.44
HOXC9-201ENST00000303450 MT1HP80294 61 aa12.32□□□□□ -0.44
HOXC9-201ENST00000303450 FLGP20930 4061 aaPredicted RBP12.31□□□□□ -0.44
HOXC9-201ENST00000303450 OCR1Q9BZK8 76 aa12.3□□□□□ -0.44
HOXC9-201ENST00000303450 H0Y9P7 68 aa12.28□□□□□ -0.44
HOXC9-201ENST00000303450 ATOX1O00244 68 aa12.27□□□□□ -0.45
HOXC9-201ENST00000303450 LOC101927531A0A1B0GV80 90 aa12.24□□□□□ -0.45
HOXC9-201ENST00000303450 FAM236AA0A1B0GUQ0 79 aa12.22□□□□□ -0.45
HOXC9-201ENST00000303450 FAM236BA0A1B0GV22 79 aa12.22□□□□□ -0.45
HOXC9-201ENST00000303450 M0R2T5 61 aa12.21□□□□□ -0.45
HOXC9-201ENST00000303450 CYP4F30PQ9H0H9 118 aa12.21□□□□□ -0.46
HOXC9-201ENST00000303450 MP68P56378 58 aa12.18□□□□□ -0.46
HOXC9-201ENST00000303450 C4orf26Q17RF5 130 aa12.18□□□□□ -0.46
HOXC9-201ENST00000303450 C5orf47Q569G3 176 aa12.17□□□□□ -0.46
HOXC9-201ENST00000303450 C1orf64Q8NEQ6 169 aa12.15□□□□□ -0.46
HOXC9-201ENST00000303450 LINC00208Q96KT6 92 aa12.14□□□□□ -0.47
HOXC9-201ENST00000303450 SMIM20Q8N5G0 67 aa12.11□□□□□ -0.47
HOXC9-201ENST00000303450 H1FX-AS1Q4G0G2 97 aa12.08□□□□□ -0.48
HOXC9-201ENST00000303450 TRAV7A0A075B6U4 112 aa12.06□□□□□ -0.48
HOXC9-201ENST00000303450 H3BPC8 53 aa12.06□□□□□ -0.48
HOXC9-201ENST00000303450 KRTAP10-6P60371 365 aaPredicted RBP12□□□□□ -0.49
HOXC9-201ENST00000303450 KRTAP3-1Q9BYR8 98 aa11.98□□□□□ -0.49
HOXC9-201ENST00000303450 KLKP1Q107X0 134 aa11.96□□□□□ -0.49
HOXC9-201ENST00000303450 LORP23490 312 aaPredicted RBP11.96□□□□□ -0.5
HOXC9-201ENST00000303450 SERP2Q8N6R1 65 aa11.87□□□□□ -0.51
HOXC9-201ENST00000303450 S4R3F8 94 aa11.82□□□□□ -0.52
HOXC9-201ENST00000303450 A8MUN3 132 aa11.78□□□□□ -0.52
HOXC9-201ENST00000303450 SNURFQ9Y675 71 aa11.76□□□□□ -0.53
HOXC9-201ENST00000303450 C20orf197Q8N268 126 aa11.75□□□□□ -0.53
HOXC9-201ENST00000303450 KRTAP9-8Q9BYQ0 159 aa11.75□□□□□ -0.53
HOXC9-201ENST00000303450 LCA10Q71F78 164 aa11.74□□□□□ -0.53
HOXC9-201ENST00000303450 COX7CP15954 63 aa11.68□□□□□ -0.54
HOXC9-201ENST00000303450 CSAG1Q6PB30 78 aa11.66□□□□□ -0.54
HOXC9-201ENST00000303450 MT2AP02795 61 aa11.65□□□□□ -0.54
HOXC9-201ENST00000303450 DMAC1Q96GE9 116 aa11.64□□□□□ -0.55
HOXC9-201ENST00000303450 ANAPC13Q9BS18 74 aa11.6□□□□□ -0.55
HOXC9-201ENST00000303450 KRTAP3-3Q9BYR6 98 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms