RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CD164Q04900 197 aa11.38□□□□□ -0.59
VPS53-216ENST00000574029 VAMP3Q15836 100 aa11.37□□□□□ -0.59
VPS53-216ENST00000574029 C12orf57Q99622 126 aa11.37□□□□□ -0.59
VPS53-216ENST00000574029 CEND1Q8N111 149 aa11.36□□□□□ -0.59
VPS53-216ENST00000574029 NHP2Q9NX24 153 aaKnown RBP11.35□□□□□ -0.59
VPS53-216ENST00000574029 PRO1933Q9H354 126 aa11.34□□□□□ -0.59
VPS53-216ENST00000574029 A0A0B4J2C4 111 aa11.33□□□□□ -0.6
VPS53-216ENST00000574029 TEX49A0A1B0GTD5 131 aa11.33□□□□□ -0.6
VPS53-216ENST00000574029 Q1RN00 199 aa11.33□□□□□ -0.6
VPS53-216ENST00000574029 Q5XG85 94 aa11.33□□□□□ -0.6
VPS53-216ENST00000574029 IGLV5-48A0A075B6I7 105 aa11.32□□□□□ -0.6
VPS53-216ENST00000574029 LORP23490 312 aaPredicted RBP11.32□□□□□ -0.6
VPS53-216ENST00000574029 LINC00575Q6W349 94 aa11.32□□□□□ -0.6
VPS53-216ENST00000574029 RAB37Q96AX2 223 aa11.32□□□□□ -0.6
VPS53-216ENST00000574029 DEFB105AQ8NG35 78 aa11.31□□□□□ -0.6
VPS53-216ENST00000574029 TMEM238LA0A1B0GVL6 79 aa11.3□□□□□ -0.6
VPS53-216ENST00000574029 A6NJY4 79 aa11.3□□□□□ -0.6
VPS53-216ENST00000574029 H7C2G1 150 aa11.3□□□□□ -0.6
VPS53-216ENST00000574029 BVES-AS1Q5T3Y7 98 aa11.3□□□□□ -0.6
VPS53-216ENST00000574029 UQCR10Q9UDW1 63 aa11.3□□□□□ -0.6
VPS53-216ENST00000574029 KRTAP10-6P60371 365 aaPredicted RBP11.29□□□□□ -0.6
VPS53-216ENST00000574029 SMIM29Q86T20 159 aa11.29□□□□□ -0.6
VPS53-216ENST00000574029 FXYD2P54710 66 aa11.28□□□□□ -0.6
VPS53-216ENST00000574029 HSD52Q0P140 79 aa11.28□□□□□ -0.6
VPS53-216ENST00000574029 C1orf195Q5TG92 126 aa11.28□□□□□ -0.6
VPS53-216ENST00000574029 hADV29S1A0JD25 119 aa11.27□□□□□ -0.61
VPS53-216ENST00000574029 PRO1854Q9UHT4 67 aa11.26□□□□□ -0.61
VPS53-216ENST00000574029 RPL37P61927 97 aaKnown RBP11.25□□□□□ -0.61
VPS53-216ENST00000574029 H0YGX0 51 aa11.22□□□□□ -0.61
VPS53-216ENST00000574029 A0A0G2JQZ4 141 aa11.21□□□□□ -0.61
VPS53-216ENST00000574029 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.2□□□□□ -0.62
VPS53-216ENST00000574029 Q6ZQY7 126 aa11.2□□□□□ -0.62
VPS53-216ENST00000574029 SMIM6P0DI80 62 aa11.19□□□□□ -0.62
VPS53-216ENST00000574029 M0R2T5 61 aa11.18□□□□□ -0.62
VPS53-216ENST00000574029 PPDPFLQ8WWR9 84 aa11.16□□□□□ -0.62
VPS53-216ENST00000574029 SNCGO76070 127 aa11.15□□□□□ -0.62
VPS53-216ENST00000574029 COX6B2Q6YFQ2 88 aa11.15□□□□□ -0.62
VPS53-216ENST00000574029 A0A1B0GX51 115 aa11.13□□□□□ -0.63
VPS53-216ENST00000574029 FAM218AQ96MZ4 157 aa11.13□□□□□ -0.63
VPS53-216ENST00000574029 LOC105371267A0A1B0GV96 52 aa11.12□□□□□ -0.63
VPS53-216ENST00000574029 TRIAP1O43715 76 aa11.12□□□□□ -0.63
VPS53-216ENST00000574029 TCL1BO95988 128 aa11.12□□□□□ -0.63
VPS53-216ENST00000574029 OCIAD2Q56VL3 154 aa11.12□□□□□ -0.63
VPS53-216ENST00000574029 K7ERJ3 54 aa11.11□□□□□ -0.63
VPS53-216ENST00000574029 FLGP20930 4061 aaPredicted RBP11.1□□□□□ -0.63
VPS53-216ENST00000574029 F8WEM9 126 aa11.09□□□□□ -0.63
VPS53-216ENST00000574029 SNHG12Q9BXW3 62 aa11.07□□□□□ -0.64
VPS53-216ENST00000574029 Q6JHZ5 121 aa11.06□□□□□ -0.64
VPS53-216ENST00000574029 PSMB2P49721 201 aa11.05□□□□□ -0.64
VPS53-216ENST00000574029 GHRHP01286 108 aa11.04□□□□□ -0.64
VPS53-216ENST00000574029 COX6CP09669 75 aa11.04□□□□□ -0.64
VPS53-216ENST00000574029 CLEC2BQ92478 149 aa11.02□□□□□ -0.65
VPS53-216ENST00000574029 M0R143 59 aa11.01□□□□□ -0.65
VPS53-216ENST00000574029 KRTAP9-7A8MTY7 169 aa11□□□□□ -0.65
VPS53-216ENST00000574029 IGFL1Q6UW32 110 aa11□□□□□ -0.65
VPS53-216ENST00000574029 TSTD3H0UI37 97 aa10.99□□□□□ -0.65
VPS53-216ENST00000574029 TRBV7-7A0A0K0K1E9 115 aa10.98□□□□□ -0.65
VPS53-216ENST00000574029 NDUFV3P56181 108 aaKnown RBP10.98□□□□□ -0.65
VPS53-216ENST00000574029 H3BQ85 93 aa10.97□□□□□ -0.65
VPS53-216ENST00000574029 Q75L30 129 aa10.96□□□□□ -0.65
VPS53-216ENST00000574029 DNAL4O96015 105 aa10.95□□□□□ -0.66
VPS53-216ENST00000574029 ATP11AUNQ6ZP68 121 aa10.95□□□□□ -0.66
VPS53-216ENST00000574029 H3BUT2 72 aa10.94□□□□□ -0.66
VPS53-216ENST00000574029 FABP2P12104 132 aa10.94□□□□□ -0.66
VPS53-216ENST00000574029 OBSCN-AS1Q96MR7 158 aa10.94□□□□□ -0.66
VPS53-216ENST00000574029 ORMDL1Q9P0S3 153 aa10.94□□□□□ -0.66
VPS53-216ENST00000574029 SCGB1C2P0DMR2 95 aa10.93□□□□□ -0.66
VPS53-216ENST00000574029 Q6Q795 121 aa10.93□□□□□ -0.66
VPS53-216ENST00000574029 TRACP01848 142 aa10.92□□□□□ -0.66
VPS53-216ENST00000574029 LST1O00453 97 aa10.91□□□□□ -0.66
VPS53-216ENST00000574029 H3BMG7 143 aa10.9□□□□□ -0.66
VPS53-216ENST00000574029 TMEM256-PLSCR3K7ERE1 68 aa10.9□□□□□ -0.66
VPS53-216ENST00000574029 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.87□□□□□ -0.67
VPS53-216ENST00000574029 TEN1Q86WV5 123 aa10.86□□□□□ -0.67
VPS53-216ENST00000574029 UBE2V1Q13404 147 aa10.85□□□□□ -0.67
VPS53-216ENST00000574029 Q96NJ1 140 aa10.82□□□□□ -0.68
VPS53-216ENST00000574029 NAA38Q9BRA0 125 aaKnown RBP10.81□□□□□ -0.68
VPS53-216ENST00000574029 KRTAP9-8Q9BYQ0 159 aa10.81□□□□□ -0.68
VPS53-216ENST00000574029 ATXN8Q156A1 80 aa10.79□□□□□ -0.68
VPS53-216ENST00000574029 BATFQ16520 125 aa10.79□□□□□ -0.68
VPS53-216ENST00000574029 ANKRD29Q8N6D5 301 aa10.79□□□□□ -0.68
VPS53-216ENST00000574029 A0A1W2PNM2 257 aa10.78□□□□□ -0.68
VPS53-216ENST00000574029 BAALC-AS2P0C853 105 aa10.78□□□□□ -0.68
VPS53-216ENST00000574029 C20orf166-AS1Q96NR2 134 aa10.78□□□□□ -0.68
VPS53-216ENST00000574029 SS18L2Q9UHA2 77 aa10.78□□□□□ -0.68
VPS53-216ENST00000574029 A8MUU9 505 aa10.76□□□□□ -0.69
VPS53-216ENST00000574029 LYRM7Q5U5X0 104 aa10.75□□□□□ -0.69
VPS53-216ENST00000574029 TRBV7-4A0A0J9YYF1 115 aa10.74□□□□□ -0.69
VPS53-216ENST00000574029 TRBV20-1A0A075B6N2 111 aa10.73□□□□□ -0.69
VPS53-216ENST00000574029 A0A087WSZ3 146 aa10.73□□□□□ -0.69
VPS53-216ENST00000574029 C9orf118A6NHY6 69 aa10.72□□□□□ -0.69
VPS53-216ENST00000574029 RBM3P98179 157 aaKnown RBP10.72□□□□□ -0.69
VPS53-216ENST00000574029 A0A1B0GV72 72 aa10.71□□□□□ -0.69
VPS53-216ENST00000574029 TAX1BP3O14907 124 aa10.71□□□□□ -0.69
VPS53-216ENST00000574029 CCKP06307 115 aa10.68□□□□□ -0.7
VPS53-216ENST00000574029 DSCR8Q96T75 97 aa10.67□□□□□ -0.7
VPS53-216ENST00000574029 A0A1W2PPM0 123 aa10.65□□□□□ -0.7
VPS53-216ENST00000574029 JMJD7-PLA2G4BH0Y9G9 81 aa10.64□□□□□ -0.71
VPS53-216ENST00000574029 C9JAW5 83 aa10.63□□□□□ -0.71
VPS53-216ENST00000574029 USH2AO75445 5202 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms