RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 KLKP1Q107X0 134 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 C4orf26Q17RF5 130 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 C6orf226Q5I0X4 101 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 LINC00308Q8TCZ7 52 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 DSCR8Q96T75 97 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 LITAFQ99732 161 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 ORMDL1Q9P0S3 153 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 LINC00474Q9P2X8 69 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 UBE2D4Q9Y2X8 147 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 ERC2-IT1O76042 136 aa4.11□□□□□ -1.75
VPS53-213ENST00000572334 CCKP06307 115 aa4.11□□□□□ -1.75
VPS53-213ENST00000572334 SS18Q15532 418 aa4.11□□□□□ -1.75
VPS53-213ENST00000572334 RNASE13Q5GAN3 156 aaKnown RBP4.11□□□□□ -1.75
VPS53-213ENST00000572334 Q6ZRP5 223 aa4.11□□□□□ -1.75
VPS53-213ENST00000572334 KRTAP11-1Q8IUC1 163 aa4.11□□□□□ -1.75
VPS53-213ENST00000572334 SMCR5Q8TEV8 140 aa4.11□□□□□ -1.75
VPS53-213ENST00000572334 PSORS1C2Q9UIG4 136 aa4.11□□□□□ -1.75
VPS53-213ENST00000572334 IGLV5-45A0A087WSX0 123 aa4.1□□□□□ -1.75
VPS53-213ENST00000572334 ZNF561-AS1K7EIQ3 104 aa4.1□□□□□ -1.75
VPS53-213ENST00000572334 RPL39P62891 51 aaKnown RBP4.1□□□□□ -1.75
VPS53-213ENST00000572334 C9orf116Q5BN46 136 aaPredicted RBP4.1□□□□□ -1.75
VPS53-213ENST00000572334 REG3GQ6UW15 175 aa4.1□□□□□ -1.75
VPS53-213ENST00000572334 OBSCN-AS1Q96MR7 158 aa4.1□□□□□ -1.75
VPS53-213ENST00000572334 RBM3P98179 157 aaKnown RBP4.09□□□□□ -1.75
VPS53-213ENST00000572334 PHF5AQ7RTV0 110 aaKnown RBP4.09□□□□□ -1.75
VPS53-213ENST00000572334 FAM19A3Q7Z5A8 133 aa4.09□□□□□ -1.75
VPS53-213ENST00000572334 KRTAP7-1Q8IUC3 87 aa4.09□□□□□ -1.75
VPS53-213ENST00000572334 OPRPNQ99935 248 aaPredicted RBP4.09□□□□□ -1.75
VPS53-213ENST00000572334 IGHV3OR16-9A0A0B4J2B5 98 aa4.08□□□□□ -1.76
VPS53-213ENST00000572334 EIF4EBP3O60516 100 aaPredicted RBP4.08□□□□□ -1.76
VPS53-213ENST00000572334 C10orf25Q5T742 122 aa4.08□□□□□ -1.76
VPS53-213ENST00000572334 C20orf197Q8N268 126 aa4.08□□□□□ -1.76
VPS53-213ENST00000572334 CAMK2N2Q96S95 79 aa4.08□□□□□ -1.76
VPS53-213ENST00000572334 PKIGQ9Y2B9 76 aa4.08□□□□□ -1.76
VPS53-213ENST00000572334 IGKV3D-7A0A0C4DH55 119 aa4.07□□□□□ -1.76
VPS53-213ENST00000572334 FAM168BA1KXE4 195 aa4.07□□□□□ -1.76
VPS53-213ENST00000572334 KRTAP1-4P0C5Y4 121 aa4.07□□□□□ -1.76
VPS53-213ENST00000572334 CXCL6P80162 114 aa4.07□□□□□ -1.76
VPS53-213ENST00000572334 BRK1Q8WUW1 75 aa4.07□□□□□ -1.76
VPS53-213ENST00000572334 MUC2Q02817 5179 aa4.07□□□□□ -1.76
VPS53-213ENST00000572334 IGLV5-39A0A0G2JS06 123 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 TRBV7-6A0A0J9YX20 115 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 IGLV7-43P04211 117 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 TLX1NBP0CAT3 122 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 SPAG11BQ08648 103 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 KIAA0087Q14695 138 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 C1orf137Q5JT78 98 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 ADAMTSL4-AS1Q5T5F5 129 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 UNQ6190/PRO20217Q6UXQ8 127 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 LINC01561Q8N1V8 128 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 PRR26Q8N8Z3 221 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 KRTAP4-9Q9BYQ8 210 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 LINC00846Q9NV44 126 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 C6orf48Q9UBA6 75 aa4.06□□□□□ -1.76
VPS53-213ENST00000572334 PMAIP1Q13794 54 aa4.05□□□□□ -1.76
VPS53-213ENST00000572334 PRR15Q8IV56 129 aa4.05□□□□□ -1.76
VPS53-213ENST00000572334 C14orf132Q9NPU4 83 aa4.05□□□□□ -1.76
VPS53-213ENST00000572334 H0Y9J4 135 aa4.04□□□□□ -1.76
VPS53-213ENST00000572334 H7BZZ5 65 aa4.04□□□□□ -1.76
VPS53-213ENST00000572334 CD164Q04900 197 aa4.04□□□□□ -1.76
VPS53-213ENST00000572334 SND1-IT1Q9HBX3 110 aa4.04□□□□□ -1.76
VPS53-213ENST00000572334 TRAV23DV6A0A075B6W5 121 aa4.03□□□□□ -1.76
VPS53-213ENST00000572334 A0A087WZ39 114 aa4.03□□□□□ -1.76
VPS53-213ENST00000572334 A0A0U1RQV1 116 aa4.03□□□□□ -1.76
VPS53-213ENST00000572334 C9orf129Q5T035 196 aaKnown RBP4.03□□□□□ -1.76
VPS53-213ENST00000572334 LINC00242Q5T6M2 205 aa4.03□□□□□ -1.76
VPS53-213ENST00000572334 KRTAP4-2Q9BYR5 136 aa4.03□□□□□ -1.76
VPS53-213ENST00000572334 LOC110117498A0A087WWA1 95 aa4.02□□□□□ -1.77
VPS53-213ENST00000572334 DIRC1Q969H9 104 aa4.02□□□□□ -1.77
VPS53-213ENST00000572334 LINC00167Q96N53 147 aa4.02□□□□□ -1.77
VPS53-213ENST00000572334 CDKN2A-AS1Q9UH64 79 aa4.02□□□□□ -1.77
VPS53-213ENST00000572334 F8WEM9 126 aa4.01□□□□□ -1.77
VPS53-213ENST00000572334 MRPL55Q7Z7F7 128 aaKnown RBP4.01□□□□□ -1.77
VPS53-213ENST00000572334 ZNF625Q96I27 306 aaPredicted RBP4.01□□□□□ -1.77
VPS53-213ENST00000572334 IGLV1-50A0A075B6I6 118 aa4□□□□□ -1.77
VPS53-213ENST00000572334 A0A087WVE0 104 aa4□□□□□ -1.77
VPS53-213ENST00000572334 A0A1B0GW54 56 aa4□□□□□ -1.77
VPS53-213ENST00000572334 SMIM1B2RUZ4 78 aa4□□□□□ -1.77
VPS53-213ENST00000572334 LINC00158P58513 81 aa4□□□□□ -1.77
VPS53-213ENST00000572334 SMIM11BQ8TCY0 68 aa4□□□□□ -1.77
VPS53-213ENST00000572334 COX7B2Q8TF08 81 aa4□□□□□ -1.77
VPS53-213ENST00000572334 NDUFB1O75438 58 aa3.99□□□□□ -1.77
VPS53-213ENST00000572334 COX17Q14061 63 aa3.99□□□□□ -1.77
VPS53-213ENST00000572334 MIR7-3HGQ8N6C7 128 aa3.99□□□□□ -1.77
VPS53-213ENST00000572334 MUC17Q685J3 4493 aa3.98□□□□□ -1.77
VPS53-213ENST00000572334 NCR3O14931 201 aa3.98□□□□□ -1.77
VPS53-213ENST00000572334 NDUFS5O43920 106 aa3.98□□□□□ -1.77
VPS53-213ENST00000572334 Q1T7F1 81 aa3.98□□□□□ -1.77
VPS53-213ENST00000572334 FAM218AQ96MZ4 157 aa3.98□□□□□ -1.77
VPS53-213ENST00000572334 C22orf24Q9Y442 160 aa3.98□□□□□ -1.77
VPS53-213ENST00000572334 A0A087X002 238 aa3.97□□□□□ -1.77
VPS53-213ENST00000572334 PRYO14603 147 aa3.97□□□□□ -1.77
VPS53-213ENST00000572334 ZNF861PO60384 105 aa3.97□□□□□ -1.77
VPS53-213ENST00000572334 LINC01547P58512 204 aaPredicted RBP3.97□□□□□ -1.77
VPS53-213ENST00000572334 UBE2BP63146 152 aa3.97□□□□□ -1.77
VPS53-213ENST00000572334 NREPQ16612 68 aa3.97□□□□□ -1.77
VPS53-213ENST00000572334 FP248Q71RG6 208 aaPredicted RBP3.97□□□□□ -1.77
VPS53-213ENST00000572334 TMEM254Q8TBM7 123 aa3.97□□□□□ -1.77
VPS53-213ENST00000572334 CYSTM1Q9H1C7 97 aa3.97□□□□□ -1.77
VPS53-213ENST00000572334 Q8IZM0 81 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms