RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CD164Q04900 197 aa8.07□□□□□ -1.12
CLN3-236ENST00000568558 Q1RN00 199 aa8.07□□□□□ -1.12
CLN3-236ENST00000568558 TAL2Q16559 108 aa8.06□□□□□ -1.12
CLN3-236ENST00000568558 PRO1933Q9H354 126 aa8.06□□□□□ -1.12
CLN3-236ENST00000568558 CFC1BP0CG36 223 aa8.05□□□□□ -1.12
CLN3-236ENST00000568558 CFC1P0CG37 223 aa8.05□□□□□ -1.12
CLN3-236ENST00000568558 IGLV5-48A0A075B6I7 105 aa8.04□□□□□ -1.12
CLN3-236ENST00000568558 TEX49A0A1B0GTD5 131 aa8.04□□□□□ -1.12
CLN3-236ENST00000568558 H7C2G1 150 aa8.03□□□□□ -1.12
CLN3-236ENST00000568558 Q5XG85 94 aa8.03□□□□□ -1.12
CLN3-236ENST00000568558 LINC00575Q6W349 94 aa8.03□□□□□ -1.12
CLN3-236ENST00000568558 SMIM29Q86T20 159 aa8.03□□□□□ -1.12
CLN3-236ENST00000568558 CEND1Q8N111 149 aa8.01□□□□□ -1.13
CLN3-236ENST00000568558 FXYD2P54710 66 aa8□□□□□ -1.13
CLN3-236ENST00000568558 VAMP3Q15836 100 aa8□□□□□ -1.13
CLN3-236ENST00000568558 C1orf195Q5TG92 126 aa8□□□□□ -1.13
CLN3-236ENST00000568558 NHP2Q9NX24 153 aaKnown RBP8□□□□□ -1.13
CLN3-236ENST00000568558 FLGP20930 4061 aaPredicted RBP7.99□□□□□ -1.13
CLN3-236ENST00000568558 A0A0B4J2C4 111 aa7.99□□□□□ -1.13
CLN3-236ENST00000568558 LORP23490 312 aaPredicted RBP7.99□□□□□ -1.13
CLN3-236ENST00000568558 RAB37Q96AX2 223 aa7.99□□□□□ -1.13
CLN3-236ENST00000568558 A0A0G2JQZ4 141 aa7.98□□□□□ -1.13
CLN3-236ENST00000568558 KRTAP10-6P60371 365 aaPredicted RBP7.98□□□□□ -1.13
CLN3-236ENST00000568558 RPL37P61927 97 aaKnown RBP7.98□□□□□ -1.13
CLN3-236ENST00000568558 hADV29S1A0JD25 119 aa7.97□□□□□ -1.13
CLN3-236ENST00000568558 Q6ZQY7 126 aa7.97□□□□□ -1.13
CLN3-236ENST00000568558 BVES-AS1Q5T3Y7 98 aa7.95□□□□□ -1.14
CLN3-236ENST00000568558 HSD52Q0P140 79 aa7.94□□□□□ -1.14
CLN3-236ENST00000568558 TMEM238LA0A1B0GVL6 79 aa7.93□□□□□ -1.14
CLN3-236ENST00000568558 A6NJY4 79 aa7.93□□□□□ -1.14
CLN3-236ENST00000568558 K7ERJ3 54 aa7.93□□□□□ -1.14
CLN3-236ENST00000568558 FAM218AQ96MZ4 157 aa7.93□□□□□ -1.14
CLN3-236ENST00000568558 UQCR10Q9UDW1 63 aa7.93□□□□□ -1.14
CLN3-236ENST00000568558 PRO1854Q9UHT4 67 aa7.93□□□□□ -1.14
CLN3-236ENST00000568558 M0R2T5 61 aa7.91□□□□□ -1.14
CLN3-236ENST00000568558 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.91□□□□□ -1.14
CLN3-236ENST00000568558 TCL1BO95988 128 aa7.9□□□□□ -1.14
CLN3-236ENST00000568558 COX6B2Q6YFQ2 88 aa7.9□□□□□ -1.14
CLN3-236ENST00000568558 TRIAP1O43715 76 aa7.89□□□□□ -1.15
CLN3-236ENST00000568558 H0YGX0 51 aa7.87□□□□□ -1.15
CLN3-236ENST00000568558 F8WEM9 126 aa7.86□□□□□ -1.15
CLN3-236ENST00000568558 CLEC2BQ92478 149 aa7.85□□□□□ -1.15
CLN3-236ENST00000568558 OCIAD2Q56VL3 154 aa7.84□□□□□ -1.15
CLN3-236ENST00000568558 IGFL1Q6UW32 110 aa7.84□□□□□ -1.15
CLN3-236ENST00000568558 PPDPFLQ8WWR9 84 aa7.84□□□□□ -1.15
CLN3-236ENST00000568558 H3BUT2 72 aa7.83□□□□□ -1.16
CLN3-236ENST00000568558 SNHG12Q9BXW3 62 aa7.83□□□□□ -1.16
CLN3-236ENST00000568558 SMIM6P0DI80 62 aa7.82□□□□□ -1.16
CLN3-236ENST00000568558 PSMB2P49721 201 aa7.81□□□□□ -1.16
CLN3-236ENST00000568558 Q6JHZ5 121 aa7.81□□□□□ -1.16
CLN3-236ENST00000568558 TRBV7-7A0A0K0K1E9 115 aa7.8□□□□□ -1.16
CLN3-236ENST00000568558 LOC105371267A0A1B0GV96 52 aa7.8□□□□□ -1.16
CLN3-236ENST00000568558 A0A1B0GX51 115 aa7.8□□□□□ -1.16
CLN3-236ENST00000568558 SNCGO76070 127 aa7.79□□□□□ -1.16
CLN3-236ENST00000568558 NDUFV3P56181 108 aaKnown RBP7.79□□□□□ -1.16
CLN3-236ENST00000568558 Q75L30 129 aa7.77□□□□□ -1.17
CLN3-236ENST00000568558 OBSCN-AS1Q96MR7 158 aa7.77□□□□□ -1.17
CLN3-236ENST00000568558 FABP2P12104 132 aa7.76□□□□□ -1.17
CLN3-236ENST00000568558 ATP11AUNQ6ZP68 121 aa7.76□□□□□ -1.17
CLN3-236ENST00000568558 Q6Q795 121 aa7.74□□□□□ -1.17
CLN3-236ENST00000568558 H3BMG7 143 aa7.73□□□□□ -1.17
CLN3-236ENST00000568558 COX6CP09669 75 aa7.73□□□□□ -1.17
CLN3-236ENST00000568558 DNAL4O96015 105 aa7.72□□□□□ -1.17
CLN3-236ENST00000568558 ORMDL1Q9P0S3 153 aa7.72□□□□□ -1.17
CLN3-236ENST00000568558 A0A1B0GV72 72 aa7.71□□□□□ -1.18
CLN3-236ENST00000568558 M0R143 59 aa7.71□□□□□ -1.18
CLN3-236ENST00000568558 NAA38Q9BRA0 125 aaKnown RBP7.71□□□□□ -1.18
CLN3-236ENST00000568558 LST1O00453 97 aa7.7□□□□□ -1.18
CLN3-236ENST00000568558 SCGB1C2P0DMR2 95 aa7.7□□□□□ -1.18
CLN3-236ENST00000568558 GHRHP01286 108 aa7.69□□□□□ -1.18
CLN3-236ENST00000568558 Q96NJ1 140 aa7.69□□□□□ -1.18
CLN3-236ENST00000568558 A0A1W2PNM2 257 aa7.68□□□□□ -1.18
CLN3-236ENST00000568558 TSTD3H0UI37 97 aa7.68□□□□□ -1.18
CLN3-236ENST00000568558 TRACP01848 142 aa7.68□□□□□ -1.18
CLN3-236ENST00000568558 TEN1Q86WV5 123 aa7.67□□□□□ -1.18
CLN3-236ENST00000568558 TMEM256-PLSCR3K7ERE1 68 aa7.66□□□□□ -1.18
CLN3-236ENST00000568558 C20orf166-AS1Q96NR2 134 aa7.66□□□□□ -1.18
CLN3-236ENST00000568558 A0A087WSZ3 146 aa7.65□□□□□ -1.18
CLN3-236ENST00000568558 SS18L2Q9UHA2 77 aa7.65□□□□□ -1.18
CLN3-236ENST00000568558 A8MUU9 505 aa7.64□□□□□ -1.19
CLN3-236ENST00000568558 H3BQ85 93 aa7.64□□□□□ -1.19
CLN3-236ENST00000568558 BATFQ16520 125 aa7.64□□□□□ -1.19
CLN3-236ENST00000568558 UBE2V1Q13404 147 aa7.63□□□□□ -1.19
CLN3-236ENST00000568558 ANKRD29Q8N6D5 301 aa7.63□□□□□ -1.19
CLN3-236ENST00000568558 KRTAP9-8Q9BYQ0 159 aa7.63□□□□□ -1.19
CLN3-236ENST00000568558 USH2AO75445 5202 aa7.62□□□□□ -1.19
CLN3-236ENST00000568558 SSPOA2VEC9 5147 aa7.62□□□□□ -1.19
CLN3-236ENST00000568558 BAALC-AS2P0C853 105 aa7.6□□□□□ -1.19
CLN3-236ENST00000568558 TRBV20-1A0A075B6N2 111 aa7.59□□□□□ -1.19
CLN3-236ENST00000568558 TRBV7-4A0A0J9YYF1 115 aa7.58□□□□□ -1.2
CLN3-236ENST00000568558 ATXN8Q156A1 80 aa7.58□□□□□ -1.2
CLN3-236ENST00000568558 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.57□□□□□ -1.2
CLN3-236ENST00000568558 CCKP06307 115 aa7.57□□□□□ -1.2
CLN3-236ENST00000568558 KRTAP9-7A8MTY7 169 aa7.55□□□□□ -1.2
CLN3-236ENST00000568558 DSCR10P59022 87 aa7.55□□□□□ -1.2
CLN3-236ENST00000568558 RBM3P98179 157 aaKnown RBP7.55□□□□□ -1.2
CLN3-236ENST00000568558 TAX1BP3O14907 124 aa7.54□□□□□ -1.2
CLN3-236ENST00000568558 VPS25Q9BRG1 176 aa7.53□□□□□ -1.2
CLN3-236ENST00000568558 C9orf118A6NHY6 69 aa7.52□□□□□ -1.21
CLN3-236ENST00000568558 DSCR8Q96T75 97 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms