RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 DEFB105AQ8NG35 78 aa6.15□□□□□ -1.43
CTNNA1-243ENST00000540387 A0A1B0GW54 56 aa6.14□□□□□ -1.43
CTNNA1-243ENST00000540387 DEFB4AO15263 64 aa6.14□□□□□ -1.43
CTNNA1-243ENST00000540387 GYPEP15421 78 aa6.13□□□□□ -1.43
CTNNA1-243ENST00000540387 REG3AQ06141 175 aa6.13□□□□□ -1.43
CTNNA1-243ENST00000540387 Q8N377 158 aa6.13□□□□□ -1.43
CTNNA1-243ENST00000540387 A0A096LPF7 62 aa6.13□□□□□ -1.43
CTNNA1-243ENST00000540387 DEFB116Q30KQ4 102 aa6.13□□□□□ -1.43
CTNNA1-243ENST00000540387 PRAC1Q96KF2 57 aa6.13□□□□□ -1.43
CTNNA1-243ENST00000540387 TENM3Q9P273 2699 aa6.13□□□□□ -1.43
CTNNA1-243ENST00000540387 ANGP03950 147 aaKnown RBP6.12□□□□□ -1.43
CTNNA1-243ENST00000540387 LINC00313P59037 77 aa6.12□□□□□ -1.43
CTNNA1-243ENST00000540387 COA5Q86WW8 74 aa6.12□□□□□ -1.43
CTNNA1-243ENST00000540387 Q8NAQ8 132 aa6.12□□□□□ -1.43
CTNNA1-243ENST00000540387 C6orf48Q9UBA6 75 aa6.11□□□□□ -1.43
CTNNA1-243ENST00000540387 WFDC13Q8IUB5 93 aa6.11□□□□□ -1.43
CTNNA1-243ENST00000540387 Q8NBF4 154 aa6.11□□□□□ -1.43
CTNNA1-243ENST00000540387 GVQW2A0A096LPI5 108 aaPredicted RBP6.1□□□□□ -1.43
CTNNA1-243ENST00000540387 DEFB130BP0DP73 79 aa6.1□□□□□ -1.43
CTNNA1-243ENST00000540387 DEFB130AP0DP74 79 aa6.1□□□□□ -1.43
CTNNA1-243ENST00000540387 LINC01554Q52M75 96 aa6.1□□□□□ -1.43
CTNNA1-243ENST00000540387 C1orf137Q5JT78 98 aa6.1□□□□□ -1.43
CTNNA1-243ENST00000540387 H0Y9P7 68 aa6.09□□□□□ -1.43
CTNNA1-243ENST00000540387 SPINK7P58062 85 aa6.09□□□□□ -1.43
CTNNA1-243ENST00000540387 MEGF8Q7Z7M0 2845 aa6.08□□□□□ -1.44
CTNNA1-243ENST00000540387 SPRR4Q96PI1 79 aa6.08□□□□□ -1.44
CTNNA1-243ENST00000540387 PLAC8Q9NZF1 115 aa6.08□□□□□ -1.44
CTNNA1-243ENST00000540387 LINC01558Q9Y6Z2 57 aa6.08□□□□□ -1.44
CTNNA1-243ENST00000540387 IGKV2D-24A0A075B6R9 120 aa6.08□□□□□ -1.44
CTNNA1-243ENST00000540387 C9orf163Q8N9P6 203 aa6.08□□□□□ -1.44
CTNNA1-243ENST00000540387 H3BPC8 53 aa6.07□□□□□ -1.44
CTNNA1-243ENST00000540387 SPAG11AQ6PDA7 123 aa6.07□□□□□ -1.44
CTNNA1-243ENST00000540387 WFDC10BQ8IUB3 73 aa6.07□□□□□ -1.44
CTNNA1-243ENST00000540387 SPART-AS1P0CW21 52 aa6.06□□□□□ -1.44
CTNNA1-243ENST00000540387 TNP2Q05952 138 aa6.06□□□□□ -1.44
CTNNA1-243ENST00000540387 ADM2Q7Z4H4 148 aa6.06□□□□□ -1.44
CTNNA1-243ENST00000540387 HUWE1Q7Z6Z7 4374 aaKnown RBP6.06□□□□□ -1.44
CTNNA1-243ENST00000540387 CASC2Q6XLA1 102 aa6.05□□□□□ -1.44
CTNNA1-243ENST00000540387 C7orf33Q8WU49 177 aa6.05□□□□□ -1.44
CTNNA1-243ENST00000540387 COL7A1Q02388 2944 aa6.05□□□□□ -1.44
CTNNA1-243ENST00000540387 STAB2Q8WWQ8 2551 aa6.04□□□□□ -1.44
CTNNA1-243ENST00000540387 DNAH9Q9NYC9 4486 aa6.04□□□□□ -1.44
CTNNA1-243ENST00000540387 PRKDCP78527 4128 aaKnown RBP6.04□□□□□ -1.44
CTNNA1-243ENST00000540387 IGLV7-46A0A075B6I9 117 aa6.03□□□□□ -1.44
CTNNA1-243ENST00000540387 KRTAP29-1A8MX34 341 aaPredicted RBP6.03□□□□□ -1.44
CTNNA1-243ENST00000540387 PRO0255Q9UI72 69 aa6.03□□□□□ -1.44
CTNNA1-243ENST00000540387 HTN3P15516 51 aa6.02□□□□□ -1.44
CTNNA1-243ENST00000540387 CNBPP62633 177 aaKnown RBP6.02□□□□□ -1.45
CTNNA1-243ENST00000540387 PLA2G1BP04054 148 aaKnown RBP6.01□□□□□ -1.45
CTNNA1-243ENST00000540387 LCE2CQ5TA81 110 aa6.01□□□□□ -1.45
CTNNA1-243ENST00000540387 FBN3Q75N90 2809 aa6□□□□□ -1.45
CTNNA1-243ENST00000540387 CAMK2N2Q96S95 79 aa6□□□□□ -1.45
CTNNA1-243ENST00000540387 RPL37AP61513 92 aaKnown RBP5.99□□□□□ -1.45
CTNNA1-243ENST00000540387 DHRS4-AS1Q9P1J3 65 aa5.99□□□□□ -1.45
CTNNA1-243ENST00000540387 A0A0G2JQZ4 141 aa5.98□□□□□ -1.45
CTNNA1-243ENST00000540387 A0A1W2PNN7 141 aa5.98□□□□□ -1.45
CTNNA1-243ENST00000540387 IGLV1-50A0A075B6I6 118 aa5.97□□□□□ -1.45
CTNNA1-243ENST00000540387 DEFB131BA0A096LNP1 70 aa5.97□□□□□ -1.45
CTNNA1-243ENST00000540387 PRR34Q9NV39 138 aa5.97□□□□□ -1.45
CTNNA1-243ENST00000540387 Q6ZRX8 168 aa5.97□□□□□ -1.45
CTNNA1-243ENST00000540387 PCOTHQ58A44 107 aa5.96□□□□□ -1.45
CTNNA1-243ENST00000540387 IGLV5-37A0A075B6J1 123 aa5.95□□□□□ -1.46
CTNNA1-243ENST00000540387 LINC00476Q8WZB0 136 aa5.95□□□□□ -1.46
CTNNA1-243ENST00000540387 TGP01266 2768 aa5.95□□□□□ -1.46
CTNNA1-243ENST00000540387 A0A0A0MQY5 61 aa5.94□□□□□ -1.46
CTNNA1-243ENST00000540387 A0A087WSZ3 146 aa5.93□□□□□ -1.46
CTNNA1-243ENST00000540387 KRTAP4-16G5E9R7 235 aaPredicted RBP5.93□□□□□ -1.46
CTNNA1-243ENST00000540387 ASB16-AS1Q495Z4 193 aa5.93□□□□□ -1.46
CTNNA1-243ENST00000540387 HRES1P13985 223 aa5.92□□□□□ -1.46
CTNNA1-243ENST00000540387 IGFL1Q6UW32 110 aa5.92□□□□□ -1.46
CTNNA1-243ENST00000540387 RPL37AP8A6NKH3 93 aa5.92□□□□□ -1.46
CTNNA1-243ENST00000540387 H3BNG1 76 aa5.92□□□□□ -1.46
CTNNA1-243ENST00000540387 RTL8CO15255 209 aa5.92□□□□□ -1.46
CTNNA1-243ENST00000540387 LELP1Q5T871 98 aa5.91□□□□□ -1.46
CTNNA1-243ENST00000540387 CSMD3Q7Z407 3707 aa5.9□□□□□ -1.46
CTNNA1-243ENST00000540387 LCE2AQ5TA79 106 aaPredicted RBP5.9□□□□□ -1.46
CTNNA1-243ENST00000540387 RETNLBQ9BQ08 111 aa5.9□□□□□ -1.47
CTNNA1-243ENST00000540387 C15orf56Q8N910 161 aa5.89□□□□□ -1.47
CTNNA1-243ENST00000540387 SPRR1AP35321 89 aa5.89□□□□□ -1.47
CTNNA1-243ENST00000540387 TENM2Q9NT68 2774 aa5.88□□□□□ -1.47
CTNNA1-243ENST00000540387 A8MWP4 228 aa5.88□□□□□ -1.47
CTNNA1-243ENST00000540387 A0A087X002 238 aa5.87□□□□□ -1.47
CTNNA1-243ENST00000540387 KRTAP26-1Q6PEX3 210 aa5.87□□□□□ -1.47
CTNNA1-243ENST00000540387 DNAH7Q8WXX0 4024 aa5.86□□□□□ -1.47
CTNNA1-243ENST00000540387 CSAG1Q6PB30 78 aa5.86□□□□□ -1.47
CTNNA1-243ENST00000540387 Q6ZR54 194 aa5.85□□□□□ -1.47
CTNNA1-243ENST00000540387 APLNQ9ULZ1 77 aa5.85□□□□□ -1.47
CTNNA1-243ENST00000540387 LYSTQ99698 3801 aa5.85□□□□□ -1.47
CTNNA1-243ENST00000540387 MMP24-AS1A0A0U1RRL7 71 aa5.84□□□□□ -1.47
CTNNA1-243ENST00000540387 FAM168BA1KXE4 195 aa5.84□□□□□ -1.47
CTNNA1-243ENST00000540387 NUPR2A6NF83 97 aa5.84□□□□□ -1.47
CTNNA1-243ENST00000540387 PLECQ15149 4684 aaKnown RBP5.84□□□□□ -1.48
CTNNA1-243ENST00000540387 STARD9Q9P2P6 4700 aa5.84□□□□□ -1.48
CTNNA1-243ENST00000540387 IGKV2-24A0A0C4DH68 120 aa5.83□□□□□ -1.48
CTNNA1-243ENST00000540387 LINC00472Q9H8W2 130 aa5.83□□□□□ -1.48
CTNNA1-243ENST00000540387 DYNC2H1Q8NCM8 4307 aaKnown RBP5.83□□□□□ -1.48
CTNNA1-243ENST00000540387 IGLV8-61A0A075B6I0 122 aa5.82□□□□□ -1.48
CTNNA1-243ENST00000540387 H0Y9J4 135 aa5.81□□□□□ -1.48
CTNNA1-243ENST00000540387 WWC2-AS2Q96NR7 200 aa5.81□□□□□ -1.48
CTNNA1-243ENST00000540387 PLA2G2DQ9UNK4 145 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms