RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 CAMK2N2Q96S95 79 aa4.32□□□□□ -1.72
USP28-202ENST00000535607 KRTAP9-8Q9BYQ0 159 aa4.32□□□□□ -1.72
USP28-202ENST00000535607 IGLV5-48A0A075B6I7 105 aa4.31□□□□□ -1.72
USP28-202ENST00000535607 APOC4P55056 127 aa4.31□□□□□ -1.72
USP28-202ENST00000535607 FAM229BQ4G0N7 80 aa4.31□□□□□ -1.72
USP28-202ENST00000535607 KPRPQ5T749 579 aaPredicted RBP4.31□□□□□ -1.72
USP28-202ENST00000535607 NKAPP1Q8N9T2 125 aa4.31□□□□□ -1.72
USP28-202ENST00000535607 C1orf64Q8NEQ6 169 aa4.31□□□□□ -1.72
USP28-202ENST00000535607 PRR34Q9NV39 138 aa4.31□□□□□ -1.72
USP28-202ENST00000535607 CMYA5Q8N3K9 4069 aa4.31□□□□□ -1.72
USP28-202ENST00000535607 PKD1L1Q8TDX9 2849 aa4.3□□□□□ -1.72
USP28-202ENST00000535607 SORL1Q92673 2214 aa4.3□□□□□ -1.72
USP28-202ENST00000535607 DNAH3Q8TD57 4116 aa4.3□□□□□ -1.72
USP28-202ENST00000535607 NDUFS5O43920 106 aa4.29□□□□□ -1.72
USP28-202ENST00000535607 SPART-AS1P0CW21 52 aa4.29□□□□□ -1.72
USP28-202ENST00000535607 SPANXA2-OT1Q8N9U9 137 aa4.29□□□□□ -1.72
USP28-202ENST00000535607 Q8NDZ9 215 aa4.29□□□□□ -1.72
USP28-202ENST00000535607 ZCCHC13Q8WW36 166 aaKnown RBP4.29□□□□□ -1.72
USP28-202ENST00000535607 C6orf48Q9UBA6 75 aa4.29□□□□□ -1.72
USP28-202ENST00000535607 A0A087X002 238 aa4.28□□□□□ -1.72
USP28-202ENST00000535607 A0A096LPF7 62 aa4.28□□□□□ -1.72
USP28-202ENST00000535607 TRAV22A0A0B4J277 110 aa4.28□□□□□ -1.72
USP28-202ENST00000535607 HCG22E2RYF7 251 aa4.28□□□□□ -1.72
USP28-202ENST00000535607 C3orf84H3BNL1 204 aa4.28□□□□□ -1.72
USP28-202ENST00000535607 Q8N9L7 120 aa4.28□□□□□ -1.72
USP28-202ENST00000535607 XAGE1AQ9HD64 81 aa4.28□□□□□ -1.72
USP28-202ENST00000535607 KLK12Q9UKR0 248 aa4.28□□□□□ -1.72
USP28-202ENST00000535607 PSCAO43653 123 aa4.27□□□□□ -1.73
USP28-202ENST00000535607 C1orf137Q5JT78 98 aa4.27□□□□□ -1.73
USP28-202ENST00000535607 Q6ZRP5 223 aa4.27□□□□□ -1.73
USP28-202ENST00000535607 Q8NBF4 154 aa4.27□□□□□ -1.73
USP28-202ENST00000535607 B9D2Q9BPU9 175 aa4.27□□□□□ -1.73
USP28-202ENST00000535607 KCNQ1DNQ9H478 68 aa4.27□□□□□ -1.73
USP28-202ENST00000535607 DEFB105AQ8NG35 78 aa4.26□□□□□ -1.73
USP28-202ENST00000535607 SPRR4Q96PI1 79 aa4.26□□□□□ -1.73
USP28-202ENST00000535607 Q9BRP9 147 aa4.26□□□□□ -1.73
USP28-202ENST00000535607 DNHD1Q96M86 4753 aa4.26□□□□□ -1.73
USP28-202ENST00000535607 NBEAL1Q6ZS30 2694 aa4.26□□□□□ -1.73
USP28-202ENST00000535607 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.25□□□□□ -1.73
USP28-202ENST00000535607 H3BNG1 76 aa4.25□□□□□ -1.73
USP28-202ENST00000535607 PSPHP1O15172 72 aa4.25□□□□□ -1.73
USP28-202ENST00000535607 ATP11AUNQ6ZP68 121 aa4.25□□□□□ -1.73
USP28-202ENST00000535607 WFDC10AQ9H1F0 79 aa4.25□□□□□ -1.73
USP28-202ENST00000535607 MGAM2Q2M2H8 2515 aa4.25□□□□□ -1.73
USP28-202ENST00000535607 NOTCH3Q9UM47 2321 aa4.24□□□□□ -1.73
USP28-202ENST00000535607 CHKB-CPT1BH3BT56 60 aa4.24□□□□□ -1.73
USP28-202ENST00000535607 KTN1-AS1Q86SY8 53 aa4.24□□□□□ -1.73
USP28-202ENST00000535607 Q8N377 158 aa4.24□□□□□ -1.73
USP28-202ENST00000535607 LINC00208Q96KT6 92 aa4.24□□□□□ -1.73
USP28-202ENST00000535607 RPL37AP8A6NKH3 93 aa4.23□□□□□ -1.73
USP28-202ENST00000535607 SYCNQ0VAF6 134 aa4.23□□□□□ -1.73
USP28-202ENST00000535607 Q6ZRX8 168 aa4.23□□□□□ -1.73
USP28-202ENST00000535607 LRCOL1A6NCL2 159 aa4.22□□□□□ -1.73
USP28-202ENST00000535607 TLX1NBP0CAT3 122 aa4.22□□□□□ -1.73
USP28-202ENST00000535607 C14orf177Q52M58 125 aa4.22□□□□□ -1.73
USP28-202ENST00000535607 KRTAP5-3Q6L8H2 238 aa4.22□□□□□ -1.73
USP28-202ENST00000535607 NOTCH1P46531 2555 aa4.21□□□□□ -1.73
USP28-202ENST00000535607 A0A1W2PNM2 257 aa4.21□□□□□ -1.74
USP28-202ENST00000535607 A8MUN3 132 aa4.21□□□□□ -1.74
USP28-202ENST00000535607 HTN3P15516 51 aa4.21□□□□□ -1.74
USP28-202ENST00000535607 DSCR10P59022 87 aa4.21□□□□□ -1.74
USP28-202ENST00000535607 A6NED7 52 aa4.2□□□□□ -1.74
USP28-202ENST00000535607 H0Y9P7 68 aa4.2□□□□□ -1.74
USP28-202ENST00000535607 K7EIL1 84 aa4.2□□□□□ -1.74
USP28-202ENST00000535607 K7EQZ3 153 aa4.2□□□□□ -1.74
USP28-202ENST00000535607 DEFB135Q30KP9 77 aa4.2□□□□□ -1.74
USP28-202ENST00000535607 C7orf33Q8WU49 177 aa4.2□□□□□ -1.74
USP28-202ENST00000535607 PRR15LQ9BU68 103 aa4.2□□□□□ -1.74
USP28-202ENST00000535607 MEGF8Q7Z7M0 2845 aa4.19□□□□□ -1.74
USP28-202ENST00000535607 Q5VV11 94 aa4.19□□□□□ -1.74
USP28-202ENST00000535607 KRTAP17-1Q9BYP8 105 aa4.19□□□□□ -1.74
USP28-202ENST00000535607 LINC00588Q9Y4M8 146 aa4.19□□□□□ -1.74
USP28-202ENST00000535607 IGLV1-50A0A075B6I6 118 aa4.18□□□□□ -1.74
USP28-202ENST00000535607 LOC101927531A0A1B0GV80 90 aa4.18□□□□□ -1.74
USP28-202ENST00000535607 SPRR1AP35321 89 aa4.18□□□□□ -1.74
USP28-202ENST00000535607 CASC2Q6XLA1 102 aa4.18□□□□□ -1.74
USP28-202ENST00000535607 PHF5AQ7RTV0 110 aaKnown RBP4.18□□□□□ -1.74
USP28-202ENST00000535607 Q8NAQ8 132 aa4.18□□□□□ -1.74
USP28-202ENST00000535607 RETNQ9HD89 108 aa4.18□□□□□ -1.74
USP28-202ENST00000535607 IGKV2D-24A0A075B6R9 120 aa4.17□□□□□ -1.74
USP28-202ENST00000535607 C15orf56Q8N910 161 aa4.17□□□□□ -1.74
USP28-202ENST00000535607 SPTSSBQ8NFR3 76 aa4.17□□□□□ -1.74
USP28-202ENST00000535607 C11orf45Q8TAV5 145 aa4.17□□□□□ -1.74
USP28-202ENST00000535607 TP53AIP1Q9HCN2 124 aa4.17□□□□□ -1.74
USP28-202ENST00000535607 CDC42SE1Q9NRR8 79 aa4.17□□□□□ -1.74
USP28-202ENST00000535607 IGLV8-61A0A075B6I0 122 aa4.16□□□□□ -1.74
USP28-202ENST00000535607 PRR4Q16378 134 aa4.16□□□□□ -1.74
USP28-202ENST00000535607 LINC01556Q5JQF7 62 aa4.16□□□□□ -1.74
USP28-202ENST00000535607 REG3GQ6UW15 175 aa4.16□□□□□ -1.74
USP28-202ENST00000535607 WFDC10BQ8IUB3 73 aa4.16□□□□□ -1.74
USP28-202ENST00000535607 WFDC13Q8IUB5 93 aa4.16□□□□□ -1.74
USP28-202ENST00000535607 ST20-AS1Q8NBB2 130 aa4.16□□□□□ -1.74
USP28-202ENST00000535607 KRTAP4-16G5E9R7 235 aaPredicted RBP4.15□□□□□ -1.75
USP28-202ENST00000535607 DEFB4AO15263 64 aa4.15□□□□□ -1.75
USP28-202ENST00000535607 KRTAP26-1Q6PEX3 210 aa4.15□□□□□ -1.75
USP28-202ENST00000535607 C7orf65Q6ZTY9 151 aa4.15□□□□□ -1.75
USP28-202ENST00000535607 PRKDCP78527 4128 aaKnown RBP4.14□□□□□ -1.75
USP28-202ENST00000535607 A8MWP4 228 aa4.14□□□□□ -1.75
USP28-202ENST00000535607 C16orf90A8MZG2 172 aa4.14□□□□□ -1.75
USP28-202ENST00000535607 PRB2P02812 416 aaPredicted RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms