RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 C9orf116Q5BN46 136 aaPredicted RBP2.72□□□□□ -1.97
CD44-226ENST00000527889 MUSTN1Q8IVN3 82 aa2.72□□□□□ -1.97
CD44-226ENST00000527889 Q8IZM0 81 aa2.72□□□□□ -1.97
CD44-226ENST00000527889 Q8N377 158 aa2.72□□□□□ -1.97
CD44-226ENST00000527889 SERP2Q8N6R1 65 aa2.72□□□□□ -1.97
CD44-226ENST00000527889 C15orf56Q8N910 161 aa2.72□□□□□ -1.97
CD44-226ENST00000527889 MUC7Q8TAX7 377 aa2.72□□□□□ -1.97
CD44-226ENST00000527889 NHP2Q9NX24 153 aaKnown RBP2.72□□□□□ -1.97
CD44-226ENST00000527889 C3orf84H3BNL1 204 aa2.71□□□□□ -1.98
CD44-226ENST00000527889 LECT2O14960 151 aa2.71□□□□□ -1.98
CD44-226ENST00000527889 ACYP1P07311 99 aa2.71□□□□□ -1.98
CD44-226ENST00000527889 LINC00158P58513 81 aa2.71□□□□□ -1.98
CD44-226ENST00000527889 UNQ6190/PRO20217Q6UXQ8 127 aa2.71□□□□□ -1.98
CD44-226ENST00000527889 SOSTDC1Q6X4U4 206 aa2.71□□□□□ -1.98
CD44-226ENST00000527889 DIRC1Q969H9 104 aa2.71□□□□□ -1.98
CD44-226ENST00000527889 DNAH5Q8TE73 4624 aa2.71□□□□□ -1.98
CD44-226ENST00000527889 A0A087WYN8 130 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 NBDYA0A0U1RRE5 68 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 KRTAP29-1A8MX34 341 aaPredicted RBP2.7□□□□□ -1.98
CD44-226ENST00000527889 M0R2N4 97 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 NDUFC1O43677 76 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 CHTF8P0CG12 524 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 MIR7-3HGQ8N6C7 128 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 LINC00308Q8TCZ7 52 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 CLEC2BQ92478 149 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 PRO0461Q9UI25 63 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 DNAH11Q96DT5 4516 aa2.7□□□□□ -1.98
CD44-226ENST00000527889 FP248Q71RG6 208 aaPredicted RBP2.69□□□□□ -1.98
CD44-226ENST00000527889 CAMK2N2Q96S95 79 aa2.69□□□□□ -1.98
CD44-226ENST00000527889 C6orf48Q9UBA6 75 aa2.69□□□□□ -1.98
CD44-226ENST00000527889 PKD1P98161 4303 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 GVQW2A0A096LPI5 108 aaPredicted RBP2.68□□□□□ -1.98
CD44-226ENST00000527889 H7C2G1 150 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 PSCAO43653 123 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 LY6G6CO95867 125 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 RBM3P98179 157 aaKnown RBP2.68□□□□□ -1.98
CD44-226ENST00000527889 PRR4Q16378 134 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 S100A7L2Q5SY68 101 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 SFTA2Q6UW10 78 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 ATP11AUNQ6ZP68 121 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 XAGE1AQ9HD64 81 aa2.68□□□□□ -1.98
CD44-226ENST00000527889 SRRM2Q9UQ35 2752 aaKnown RBP2.67□□□□□ -1.98
CD44-226ENST00000527889 HMCN2Q8NDA2 5059 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 A0A0B4J2C4 111 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 TRBV30A0A0K0K1B3 111 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 NDUFAF8A1L188 74 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 KRTAP16-1A8MUX0 517 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 SYCNQ0VAF6 134 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 Q1RN00 199 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 Q6ZRN7 208 aaPredicted RBP2.67□□□□□ -1.98
CD44-226ENST00000527889 LINC00643Q86TS7 51 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 Q8NDZ9 215 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 SND1-IT1Q9HBX3 110 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 PRO1854Q9UHT4 67 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 DNAH8Q96JB1 4490 aa2.67□□□□□ -1.98
CD44-226ENST00000527889 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.66□□□□□ -1.98
CD44-226ENST00000527889 IGKV2-28A0A075B6P5 120 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 LOC107984156A0A0G2JMH3 177 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 K7ERS5 55 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 NCR3O14931 201 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 IGKV2D-28P01615 120 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 CCKP06307 115 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 COX17Q14061 63 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 Q6ZR54 194 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 ARL17AQ8IVW1 177 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 FAT2Q9NYQ8 4349 aa2.66□□□□□ -1.98
CD44-226ENST00000527889 IGLV8-61A0A075B6I0 122 aa2.65□□□□□ -1.99
CD44-226ENST00000527889 LRCOL1A6NCL2 159 aa2.65□□□□□ -1.99
CD44-226ENST00000527889 ASB16-AS1Q495Z4 193 aa2.65□□□□□ -1.99
CD44-226ENST00000527889 CRCT1Q9UGL9 99 aa2.65□□□□□ -1.99
CD44-226ENST00000527889 PKHD1P08F94 4074 aa2.65□□□□□ -1.99
CD44-226ENST00000527889 TRAV13-2A0A0B4J235 113 aa2.64□□□□□ -1.99
CD44-226ENST00000527889 FAM168BA1KXE4 195 aa2.64□□□□□ -1.99
CD44-226ENST00000527889 C14orf177Q52M58 125 aa2.64□□□□□ -1.99
CD44-226ENST00000527889 C9orf129Q5T035 196 aaKnown RBP2.64□□□□□ -1.99
CD44-226ENST00000527889 C1orf134Q5TEV5 83 aa2.64□□□□□ -1.99
CD44-226ENST00000527889 RETNLBQ9BQ08 111 aa2.64□□□□□ -1.99
CD44-226ENST00000527889 A0A087WTM6 91 aa2.63□□□□□ -1.99
CD44-226ENST00000527889 A0A096LNI7 61 aa2.63□□□□□ -1.99
CD44-226ENST00000527889 IGKV2-24A0A0C4DH68 120 aa2.63□□□□□ -1.99
CD44-226ENST00000527889 BCE1O60756 84 aa2.63□□□□□ -1.99
CD44-226ENST00000527889 TLX1NBP0CAT3 122 aa2.63□□□□□ -1.99
CD44-226ENST00000527889 CNBPP62633 177 aaKnown RBP2.63□□□□□ -1.99
CD44-226ENST00000527889 SMIM11BQ8TCY0 68 aa2.63□□□□□ -1.99
CD44-226ENST00000527889 TRBV10-3A0A0K0K1G6 114 aa2.62□□□□□ -1.99
CD44-226ENST00000527889 A6NN06 94 aa2.62□□□□□ -1.99
CD44-226ENST00000527889 Q1T7F1 81 aa2.62□□□□□ -1.99
CD44-226ENST00000527889 Q8N814 137 aa2.62□□□□□ -1.99
CD44-226ENST00000527889 LINC01600Q96MT4 127 aa2.62□□□□□ -1.99
CD44-226ENST00000527889 FLG2Q5D862 2391 aaPredicted RBP2.62□□□□□ -1.99
CD44-226ENST00000527889 DYNC1H1Q14204 4646 aaKnown RBP2.62□□□□□ -1.99
CD44-226ENST00000527889 hDV103S1A0JD37 113 aa2.61□□□□□ -1.99
CD44-226ENST00000527889 RTL8CO15255 209 aa2.61□□□□□ -1.99
CD44-226ENST00000527889 SLC25A20O43772 301 aa2.61□□□□□ -1.99
CD44-226ENST00000527889 COX6CP09669 75 aa2.61□□□□□ -1.99
CD44-226ENST00000527889 RPL28P46779 137 aaKnown RBP2.61□□□□□ -1.99
CD44-226ENST00000527889 KRTAP7-1Q8IUC3 87 aa2.61□□□□□ -1.99
CD44-226ENST00000527889 C9orf163Q8N9P6 203 aa2.61□□□□□ -1.99
CD44-226ENST00000527889 C7orf33Q8WU49 177 aa2.61□□□□□ -1.99
CD44-226ENST00000527889 HSPG2P98160 4391 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms