RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 FBN3Q75N90 2809 aa8.53□□□□□ -1.04
GPC1-209ENST00000495100 MP68P56378 58 aa8.52□□□□□ -1.05
GPC1-209ENST00000495100 KRTAP11-1Q8IUC1 163 aa8.51□□□□□ -1.05
GPC1-209ENST00000495100 SERP1Q9Y6X1 66 aa8.51□□□□□ -1.05
GPC1-209ENST00000495100 IGHV6-1A0A0B4J1U7 121 aa8.5□□□□□ -1.05
GPC1-209ENST00000495100 PANO1I0J062 215 aa8.5□□□□□ -1.05
GPC1-209ENST00000495100 HCG22E2RYF7 251 aa8.5□□□□□ -1.05
GPC1-209ENST00000495100 FAM229BQ4G0N7 80 aa8.49□□□□□ -1.05
GPC1-209ENST00000495100 C16orf90A8MZG2 172 aa8.48□□□□□ -1.05
GPC1-209ENST00000495100 CASC2Q6XLA1 102 aa8.48□□□□□ -1.05
GPC1-209ENST00000495100 LINC00336Q6ZUF6 198 aa8.47□□□□□ -1.05
GPC1-209ENST00000495100 DSCR10P59022 87 aa8.47□□□□□ -1.05
GPC1-209ENST00000495100 WIPF1O43516 503 aa8.47□□□□□ -1.05
GPC1-209ENST00000495100 CIRBP-AS1Q8TBR5 109 aa8.47□□□□□ -1.05
GPC1-209ENST00000495100 KLKP1Q107X0 134 aa8.46□□□□□ -1.06
GPC1-209ENST00000495100 NDUFB1O75438 58 aa8.45□□□□□ -1.06
GPC1-209ENST00000495100 MOBPQ13875 183 aa8.45□□□□□ -1.06
GPC1-209ENST00000495100 SMIM26A0A096LP01 95 aa8.45□□□□□ -1.06
GPC1-209ENST00000495100 IGLV5-48A0A075B6I7 105 aa8.44□□□□□ -1.06
GPC1-209ENST00000495100 NBDYA0A0U1RRE5 68 aa8.43□□□□□ -1.06
GPC1-209ENST00000495100 RPS28P62857 69 aaKnown RBP8.43□□□□□ -1.06
GPC1-209ENST00000495100 OCR1Q9BZK8 76 aa8.43□□□□□ -1.06
GPC1-209ENST00000495100 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.43□□□□□ -1.06
GPC1-209ENST00000495100 H0Y9P7 68 aa8.42□□□□□ -1.06
GPC1-209ENST00000495100 C14orf177Q52M58 125 aa8.42□□□□□ -1.06
GPC1-209ENST00000495100 Q5XG85 94 aa8.41□□□□□ -1.06
GPC1-209ENST00000495100 NDUFC1O43677 76 aa8.41□□□□□ -1.06
GPC1-209ENST00000495100 LYSTQ99698 3801 aa8.4□□□□□ -1.06
GPC1-209ENST00000495100 TLX1NBP0CAT3 122 aa8.4□□□□□ -1.07
GPC1-209ENST00000495100 SPTSSBQ8NFR3 76 aa8.39□□□□□ -1.07
GPC1-209ENST00000495100 DNAH10Q8IVF4 4471 aa8.38□□□□□ -1.07
GPC1-209ENST00000495100 FP248Q71RG6 208 aaPredicted RBP8.38□□□□□ -1.07
GPC1-209ENST00000495100 APLNQ9ULZ1 77 aa8.38□□□□□ -1.07
GPC1-209ENST00000495100 KRTAP4-16G5E9R7 235 aaPredicted RBP8.37□□□□□ -1.07
GPC1-209ENST00000495100 C1orf64Q8NEQ6 169 aa8.37□□□□□ -1.07
GPC1-209ENST00000495100 IGLV5-52A0A0A0MRZ9 124 aa8.37□□□□□ -1.07
GPC1-209ENST00000495100 SPRR1AP35321 89 aa8.34□□□□□ -1.07
GPC1-209ENST00000495100 F8WDY8 70 aa8.34□□□□□ -1.07
GPC1-209ENST00000495100 C9orf163Q8N9P6 203 aa8.34□□□□□ -1.07
GPC1-209ENST00000495100 RTL8CO15255 209 aa8.34□□□□□ -1.07
GPC1-209ENST00000495100 MEGF8Q7Z7M0 2845 aa8.33□□□□□ -1.08
GPC1-209ENST00000495100 NUPR2A6NF83 97 aa8.31□□□□□ -1.08
GPC1-209ENST00000495100 SEC61GP60059 68 aa8.31□□□□□ -1.08
GPC1-209ENST00000495100 hDV103S1A0JD37 113 aa8.3□□□□□ -1.08
GPC1-209ENST00000495100 PSORS1C2Q9UIG4 136 aa8.3□□□□□ -1.08
GPC1-209ENST00000495100 PRR15Q8IV56 129 aa8.3□□□□□ -1.08
GPC1-209ENST00000495100 PLA2G2DQ9UNK4 145 aa8.3□□□□□ -1.08
GPC1-209ENST00000495100 A8MUN3 132 aa8.3□□□□□ -1.08
GPC1-209ENST00000495100 TNP2Q05952 138 aa8.3□□□□□ -1.08
GPC1-209ENST00000495100 CHKB-CPT1BH3BT56 60 aa8.29□□□□□ -1.08
GPC1-209ENST00000495100 BCE1O60756 84 aa8.29□□□□□ -1.08
GPC1-209ENST00000495100 SPRR4Q96PI1 79 aa8.28□□□□□ -1.08
GPC1-209ENST00000495100 PRR15LQ9BU68 103 aa8.28□□□□□ -1.08
GPC1-209ENST00000495100 A0A087WTM6 91 aa8.27□□□□□ -1.09
GPC1-209ENST00000495100 IGLV5-37A0A075B6J1 123 aa8.26□□□□□ -1.09
GPC1-209ENST00000495100 CNBPP62633 177 aaKnown RBP8.26□□□□□ -1.09
GPC1-209ENST00000495100 DMBT1Q9UGM3 2413 aaPredicted RBP8.26□□□□□ -1.09
GPC1-209ENST00000495100 SPAG11AQ6PDA7 123 aa8.26□□□□□ -1.09
GPC1-209ENST00000495100 C1orf134Q5TEV5 83 aa8.25□□□□□ -1.09
GPC1-209ENST00000495100 A8MWP4 228 aa8.24□□□□□ -1.09
GPC1-209ENST00000495100 ATP5EP56381 51 aaPredicted RBP8.23□□□□□ -1.09
GPC1-209ENST00000495100 TRAV22A0A0B4J277 110 aa8.21□□□□□ -1.09
GPC1-209ENST00000495100 A6NED7 52 aa8.21□□□□□ -1.09
GPC1-209ENST00000495100 PRO0628Q9UI54 55 aa8.21□□□□□ -1.09
GPC1-209ENST00000495100 SPACA4Q8TDM5 124 aa8.21□□□□□ -1.1
GPC1-209ENST00000495100 A0A087X002 238 aa8.2□□□□□ -1.1
GPC1-209ENST00000495100 NOTCH2NLQ7Z3S9 236 aa8.2□□□□□ -1.1
GPC1-209ENST00000495100 V9GYY9 64 aa8.2□□□□□ -1.1
GPC1-209ENST00000495100 HUWE1Q7Z6Z7 4374 aaKnown RBP8.19□□□□□ -1.1
GPC1-209ENST00000495100 FLG2Q5D862 2391 aaPredicted RBP8.18□□□□□ -1.1
GPC1-209ENST00000495100 A8MU10 97 aa8.17□□□□□ -1.1
GPC1-209ENST00000495100 SPINK1P00995 79 aa8.16□□□□□ -1.1
GPC1-209ENST00000495100 C1orf195Q5TG92 126 aa8.16□□□□□ -1.1
GPC1-209ENST00000495100 SMR3BP02814 79 aaPredicted RBP8.15□□□□□ -1.1
GPC1-209ENST00000495100 IGKV2D-30A0A075B6S6 120 aa8.15□□□□□ -1.11
GPC1-209ENST00000495100 IGKV2-30P06310 120 aa8.15□□□□□ -1.11
GPC1-209ENST00000495100 C8orf17Q9NRJ1 99 aa8.14□□□□□ -1.11
GPC1-209ENST00000495100 LINC00472Q9H8W2 130 aa8.13□□□□□ -1.11
GPC1-209ENST00000495100 ZNF861PO60384 105 aa8.12□□□□□ -1.11
GPC1-209ENST00000495100 ZNF706Q9Y5V0 76 aaPredicted RBP8.12□□□□□ -1.11
GPC1-209ENST00000495100 PMAIP1Q13794 54 aa8.12□□□□□ -1.11
GPC1-209ENST00000495100 C4orf48Q5BLP8 95 aa8.12□□□□□ -1.11
GPC1-209ENST00000495100 COA5Q86WW8 74 aa8.11□□□□□ -1.11
GPC1-209ENST00000495100 A0A1B0GW54 56 aa8.11□□□□□ -1.11
GPC1-209ENST00000495100 MMP24-AS1A0A0U1RRL7 71 aa8.11□□□□□ -1.11
GPC1-209ENST00000495100 IGLV8-61A0A075B6I0 122 aa8.1□□□□□ -1.11
GPC1-209ENST00000495100 KRTAP10-2P60368 255 aa8.1□□□□□ -1.11
GPC1-209ENST00000495100 PRR26Q8N8Z3 221 aa8.1□□□□□ -1.11
GPC1-209ENST00000495100 A0A1B0GVX0 72 aa8.07□□□□□ -1.12
GPC1-209ENST00000495100 PLECQ15149 4684 aaKnown RBP8.07□□□□□ -1.12
GPC1-209ENST00000495100 MRPL34Q9BQ48 92 aaKnown RBP8.06□□□□□ -1.12
GPC1-209ENST00000495100 Q6ZRN7 208 aaPredicted RBP8.06□□□□□ -1.12
GPC1-209ENST00000495100 DNAH9Q9NYC9 4486 aa8.05□□□□□ -1.12
GPC1-209ENST00000495100 CD164Q04900 197 aa8.05□□□□□ -1.12
GPC1-209ENST00000495100 WWC2-AS2Q96NR7 200 aa8.04□□□□□ -1.12
GPC1-209ENST00000495100 IGLV7-43P04211 117 aa8.04□□□□□ -1.12
GPC1-209ENST00000495100 Q8N9P0 234 aaPredicted RBP8.04□□□□□ -1.12
GPC1-209ENST00000495100 DNAH7Q8WXX0 4024 aa8.03□□□□□ -1.12
GPC1-209ENST00000495100 KRTAP29-1A8MX34 341 aaPredicted RBP8.03□□□□□ -1.12
GPC1-209ENST00000495100 ZCCHC13Q8WW36 166 aaKnown RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 124.2 ms