RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 VPS13DQ5THJ4 4388 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 K7ERJ3 54 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 SLC25A20O43772 301 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 SFTA2Q6UW10 78 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 SMIM20Q8N5G0 67 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 ANKRD29Q8N6D5 301 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 C1orf64Q8NEQ6 169 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 OR13C6PQ8NH95 151 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 ZNF625Q96I27 306 aaPredicted RBP2.2□□□□□ -2.06
PTCD3-216ENST00000487043 CARD19Q96LW7 228 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 TOMM7Q9P0U1 55 aa2.2□□□□□ -2.06
PTCD3-216ENST00000487043 DNAH1Q9P2D7 4330 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 STARD9Q9P2P6 4700 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 GVQW2A0A096LPI5 108 aaPredicted RBP2.19□□□□□ -2.06
PTCD3-216ENST00000487043 TRBV30A0A0K0K1B3 111 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 TRBV10-2A0A0K0K1G8 114 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 A0A1B0GX51 115 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 C9JAW5 83 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 H3BT86 120 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 TIMM17BO60830 172 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 LY6G6CO95867 125 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 TCL1BO95988 128 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 KRTAP10-1P60331 282 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 SPAG11BQ08648 103 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 CIRBPQ14011 172 aaKnown RBP2.19□□□□□ -2.06
PTCD3-216ENST00000487043 C2orf82Q6UX34 121 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 FAM19A5Q7Z5A7 132 aaPredicted RBP2.19□□□□□ -2.06
PTCD3-216ENST00000487043 COPS9Q8WXC6 57 aa2.19□□□□□ -2.06
PTCD3-216ENST00000487043 J3KT08 172 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 M0R2N4 97 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 UQCRQO14949 82 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 PSCAO43653 123 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 INAFM2P0DMQ5 153 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 LINC00158P58513 81 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 COX17Q14061 63 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 LCE1CQ5T751 118 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 LCE1BQ5T7P3 118 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 UNQ6190/PRO20217Q6UXQ8 127 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 Q6ZRN7 208 aaPredicted RBP2.18□□□□□ -2.06
PTCD3-216ENST00000487043 MUSTN1Q8IVN3 82 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 C3orf22Q8N5N4 141 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 LINC00526Q96FQ7 95 aa2.18□□□□□ -2.06
PTCD3-216ENST00000487043 TRBV7-7A0A0K0K1E9 115 aa2.17□□□□□ -2.06
PTCD3-216ENST00000487043 CCDC179H3BU77 68 aa2.17□□□□□ -2.06
PTCD3-216ENST00000487043 C9orf153Q5TBE3 101 aa2.17□□□□□ -2.06
PTCD3-216ENST00000487043 C1orf134Q5TEV5 83 aa2.17□□□□□ -2.06
PTCD3-216ENST00000487043 Q6ZRU5 148 aa2.17□□□□□ -2.06
PTCD3-216ENST00000487043 LINC00643Q86TS7 51 aa2.17□□□□□ -2.06
PTCD3-216ENST00000487043 LINC00308Q8TCZ7 52 aa2.17□□□□□ -2.06
PTCD3-216ENST00000487043 C6orf48Q9UBA6 75 aa2.17□□□□□ -2.06
PTCD3-216ENST00000487043 DNAH7Q8WXX0 4024 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 LCE6AA0A183 80 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 ATOX1O00244 68 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 LECT2O14960 151 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 TRACP01848 142 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 CNBPP62633 177 aaKnown RBP2.16□□□□□ -2.06
PTCD3-216ENST00000487043 C9orf116Q5BN46 136 aaPredicted RBP2.16□□□□□ -2.06
PTCD3-216ENST00000487043 SOSTDC1Q6X4U4 206 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 DAND5Q8N907 189 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 R4GN34 69 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 DNAH2Q9P225 4427 aa2.16□□□□□ -2.06
PTCD3-216ENST00000487043 A0A087WTM6 91 aa2.15□□□□□ -2.07
PTCD3-216ENST00000487043 NDUFC2O95298 119 aa2.15□□□□□ -2.07
PTCD3-216ENST00000487043 CRYGAP11844 174 aa2.15□□□□□ -2.07
PTCD3-216ENST00000487043 COX7CP15954 63 aa2.15□□□□□ -2.07
PTCD3-216ENST00000487043 NPC2P61916 151 aa2.15□□□□□ -2.07
PTCD3-216ENST00000487043 KRTAP25-1Q3LHN0 102 aa2.15□□□□□ -2.07
PTCD3-216ENST00000487043 Q8N814 137 aa2.15□□□□□ -2.07
PTCD3-216ENST00000487043 C9orf163Q8N9P6 203 aa2.15□□□□□ -2.07
PTCD3-216ENST00000487043 LOC107984640A0A0U1RRK4 108 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 TEX49A0A1B0GTD5 131 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 SPRR5A0A1B0GTR4 108 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 KRTAP5-8O75690 187 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 HRES1P13985 223 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 TMEM258P61165 79 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 S100A7L2Q5SY68 101 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 SDIM1Q6ZPB5 146 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 XAGE1AQ9HD64 81 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 DNAH10Q8IVF4 4471 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 DNAH17Q9UFH2 4485 aa2.14□□□□□ -2.07
PTCD3-216ENST00000487043 SACSQ9NZJ4 4579 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 TRAV13-2A0A0B4J235 113 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 FAM236AA0A1B0GUQ0 79 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 FAM236BA0A1B0GV22 79 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 H7C2G1 150 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 LST1O00453 97 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 LINC00313P59037 77 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 PKIGQ9Y2B9 76 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 LYSTQ99698 3801 aa2.13□□□□□ -2.07
PTCD3-216ENST00000487043 A0A096LNI7 61 aa2.12□□□□□ -2.07
PTCD3-216ENST00000487043 M0R378 163 aa2.12□□□□□ -2.07
PTCD3-216ENST00000487043 BCE1O60756 84 aa2.12□□□□□ -2.07
PTCD3-216ENST00000487043 SERP2Q8N6R1 65 aa2.12□□□□□ -2.07
PTCD3-216ENST00000487043 Q8NDZ9 215 aa2.12□□□□□ -2.07
PTCD3-216ENST00000487043 DPH3Q96FX2 82 aa2.12□□□□□ -2.07
PTCD3-216ENST00000487043 LINC00474Q9P2X8 69 aa2.12□□□□□ -2.07
PTCD3-216ENST00000487043 ALMS1Q8TCU4 4167 aa2.12□□□□□ -2.07
PTCD3-216ENST00000487043 IGKV2-24A0A0C4DH68 120 aa2.11□□□□□ -2.07
PTCD3-216ENST00000487043 H0YGX0 51 aa2.11□□□□□ -2.07
PTCD3-216ENST00000487043 IGLV6-57P01721 117 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 155.4 ms