RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 CRYGAP11844 174 aa4□□□□□ -1.77
TMEM39A-209ENST00000486235 COX6A2Q02221 97 aa4□□□□□ -1.77
TMEM39A-209ENST00000486235 REG3AQ06141 175 aa4□□□□□ -1.77
TMEM39A-209ENST00000486235 REG3GQ6UW15 175 aa4□□□□□ -1.77
TMEM39A-209ENST00000486235 C5orf38Q86SI9 138 aa4□□□□□ -1.77
TMEM39A-209ENST00000486235 FAM236AA0A1B0GUQ0 79 aa3.99□□□□□ -1.77
TMEM39A-209ENST00000486235 FAM236BA0A1B0GV22 79 aa3.99□□□□□ -1.77
TMEM39A-209ENST00000486235 COX7CP15954 63 aa3.99□□□□□ -1.77
TMEM39A-209ENST00000486235 TMEM258P61165 79 aa3.99□□□□□ -1.77
TMEM39A-209ENST00000486235 C9orf153Q5TBE3 101 aa3.99□□□□□ -1.77
TMEM39A-209ENST00000486235 IGLV4-60A0A075B6I1 120 aa3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 NDUFC2-KCTD14E9PQ53 114 aa3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 BAALC-AS2P0C853 105 aa3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 HIST1H4AP62805 103 aaKnown RBP3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 HIGD2BQ4VC39 106 aa3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 ADAMTSL4-AS1Q5T5F5 129 aa3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 Q6JHZ5 121 aa3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 SPINK6Q6UWN8 80 aa3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 SMIM20Q8N5G0 67 aa3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 ZNF625Q96I27 306 aaPredicted RBP3.98□□□□□ -1.77
TMEM39A-209ENST00000486235 IGKV3OR2-268A0A0C4DH90 116 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 TRBV10-3A0A0K0K1G6 114 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 JMJD7-PLA2G4BH0Y9G9 81 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 C15orf56Q8N910 161 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 OR13C6PQ8NH95 151 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 CLEC2BQ92478 149 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 FAM104AQ969W3 186 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 OPRPNQ99935 248 aaPredicted RBP3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 OCR1Q9BZK8 76 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 CDKN2A-AS1Q9UH64 79 aa3.97□□□□□ -1.77
TMEM39A-209ENST00000486235 A0A096LNI7 61 aa3.96□□□□□ -1.78
TMEM39A-209ENST00000486235 LINC01547P58512 204 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-209ENST00000486235 RPL18AQ02543 176 aaKnown RBP3.96□□□□□ -1.78
TMEM39A-209ENST00000486235 OBSCN-AS1Q96MR7 158 aa3.96□□□□□ -1.78
TMEM39A-209ENST00000486235 TMEM243Q9BU79 118 aa3.96□□□□□ -1.78
TMEM39A-209ENST00000486235 UBE2L6O14933 153 aa3.95□□□□□ -1.78
TMEM39A-209ENST00000486235 C5orf47Q569G3 176 aa3.95□□□□□ -1.78
TMEM39A-209ENST00000486235 SERP2Q8N6R1 65 aa3.95□□□□□ -1.78
TMEM39A-209ENST00000486235 CDC42SE2Q9NRR3 84 aa3.95□□□□□ -1.78
TMEM39A-209ENST00000486235 V9GYY9 64 aa3.95□□□□□ -1.78
TMEM39A-209ENST00000486235 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.94□□□□□ -1.78
TMEM39A-209ENST00000486235 hADV29S1A0JD25 119 aa3.94□□□□□ -1.78
TMEM39A-209ENST00000486235 IGKV2-29A2NJV5 120 aaPredicted RBP3.94□□□□□ -1.78
TMEM39A-209ENST00000486235 NDUFC2O95298 119 aa3.94□□□□□ -1.78
TMEM39A-209ENST00000486235 PDE6GP18545 87 aa3.94□□□□□ -1.78
TMEM39A-209ENST00000486235 COX7B2Q8TF08 81 aa3.94□□□□□ -1.78
TMEM39A-209ENST00000486235 TMEM256-PLSCR3K7ERE1 68 aa3.93□□□□□ -1.78
TMEM39A-209ENST00000486235 CHCHD10Q8WYQ3 142 aaPredicted RBP3.93□□□□□ -1.78
TMEM39A-209ENST00000486235 SND1-IT1Q9HBX3 110 aa3.93□□□□□ -1.78
TMEM39A-209ENST00000486235 ORMDL1Q9P0S3 153 aa3.93□□□□□ -1.78
TMEM39A-209ENST00000486235 MUC2Q02817 5179 aa3.93□□□□□ -1.78
TMEM39A-209ENST00000486235 GVQW2A0A096LPI5 108 aaPredicted RBP3.92□□□□□ -1.78
TMEM39A-209ENST00000486235 COX17Q14061 63 aa3.92□□□□□ -1.78
TMEM39A-209ENST00000486235 LCE3CQ5T5A8 94 aa3.92□□□□□ -1.78
TMEM39A-209ENST00000486235 SMIM29Q86T20 159 aa3.92□□□□□ -1.78
TMEM39A-209ENST00000486235 LINC00167Q96N53 147 aa3.92□□□□□ -1.78
TMEM39A-209ENST00000486235 LINC00474Q9P2X8 69 aa3.92□□□□□ -1.78
TMEM39A-209ENST00000486235 FAT4Q6V0I7 4981 aa3.92□□□□□ -1.78
TMEM39A-209ENST00000486235 A0A0U1RQV1 116 aa3.91□□□□□ -1.78
TMEM39A-209ENST00000486235 RPL37AP8A6NKH3 93 aa3.91□□□□□ -1.78
TMEM39A-209ENST00000486235 CCKP06307 115 aa3.91□□□□□ -1.78
TMEM39A-209ENST00000486235 NPC2P61916 151 aa3.91□□□□□ -1.78
TMEM39A-209ENST00000486235 SMCR5Q8TEV8 140 aa3.91□□□□□ -1.78
TMEM39A-209ENST00000486235 A0A1W2PNN7 141 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 XCL1P47992 114 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 ATP5EP56381 51 aaPredicted RBP3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 PRR4Q16378 134 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 C1orf137Q5JT78 98 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 SOSTDC1Q6X4U4 206 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 Q8IZM0 81 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 MIR7-3HGQ8N6C7 128 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 UBL5Q9BZL1 73 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 PSORS1C2Q9UIG4 136 aa3.9□□□□□ -1.79
TMEM39A-209ENST00000486235 TRAV13-1A0A0B4J241 112 aa3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 LOC107984640A0A0U1RRK4 108 aa3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 NDUFC1O43677 76 aa3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 LINC00158P58513 81 aa3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 SYCNQ0VAF6 134 aa3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 RNASE13Q5GAN3 156 aaKnown RBP3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 LINC00337Q8N6G1 96 aa3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 SMIM11BQ8TCY0 68 aa3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 PKIGQ9Y2B9 76 aa3.89□□□□□ -1.79
TMEM39A-209ENST00000486235 IGKV2-28A0A075B6P5 120 aa3.88□□□□□ -1.79
TMEM39A-209ENST00000486235 IGHV3OR16-9A0A0B4J2B5 98 aa3.88□□□□□ -1.79
TMEM39A-209ENST00000486235 IGKV2D-28P01615 120 aa3.88□□□□□ -1.79
TMEM39A-209ENST00000486235 SS18Q15532 418 aa3.88□□□□□ -1.79
TMEM39A-209ENST00000486235 C9orf116Q5BN46 136 aaPredicted RBP3.88□□□□□ -1.79
TMEM39A-209ENST00000486235 PHF5AQ7RTV0 110 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-209ENST00000486235 C22orf24Q9Y442 160 aa3.88□□□□□ -1.79
TMEM39A-209ENST00000486235 OBSCNQ5VST9 7968 aa3.87□□□□□ -1.79
TMEM39A-209ENST00000486235 IGLV7-46A0A075B6I9 117 aa3.87□□□□□ -1.79
TMEM39A-209ENST00000486235 LOC110117498A0A087WWA1 95 aa3.87□□□□□ -1.79
TMEM39A-209ENST00000486235 FAM19A5Q7Z5A7 132 aaPredicted RBP3.87□□□□□ -1.79
TMEM39A-209ENST00000486235 DIRC1Q969H9 104 aa3.87□□□□□ -1.79
TMEM39A-209ENST00000486235 TRAV7A0A075B6U4 112 aa3.86□□□□□ -1.79
TMEM39A-209ENST00000486235 LINC00959A0A1B0GUT2 108 aa3.86□□□□□ -1.79
TMEM39A-209ENST00000486235 IGLV7-43P04211 117 aa3.86□□□□□ -1.79
TMEM39A-209ENST00000486235 CXCL6P80162 114 aa3.86□□□□□ -1.79
TMEM39A-209ENST00000486235 Q8NBF4 154 aa3.86□□□□□ -1.79
TMEM39A-209ENST00000486235 C14orf132Q9NPU4 83 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms