RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SCGB1D4Q6XE38 83 aa3.94□□□□□ -1.78
CCDC88A-213ENST00000476903 ARL17AQ8IVW1 177 aa3.94□□□□□ -1.78
CCDC88A-213ENST00000476903 SPRR4Q96PI1 79 aa3.94□□□□□ -1.78
CCDC88A-213ENST00000476903 PRO1933Q9H354 126 aa3.94□□□□□ -1.78
CCDC88A-213ENST00000476903 TRBV10-3A0A0K0K1G6 114 aa3.93□□□□□ -1.78
CCDC88A-213ENST00000476903 TRBV10-2A0A0K0K1G8 114 aa3.93□□□□□ -1.78
CCDC88A-213ENST00000476903 DAND5Q8N907 189 aa3.93□□□□□ -1.78
CCDC88A-213ENST00000476903 PAM16Q9Y3D7 125 aa3.93□□□□□ -1.78
CCDC88A-213ENST00000476903 FAM236DA0A1B0GTK5 79 aa3.92□□□□□ -1.78
CCDC88A-213ENST00000476903 E9PLD3 99 aa3.92□□□□□ -1.78
CCDC88A-213ENST00000476903 KRTAP4-16G5E9R7 235 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-213ENST00000476903 FAM236CP0DP71 79 aa3.92□□□□□ -1.78
CCDC88A-213ENST00000476903 SPAG11AQ6PDA7 123 aa3.92□□□□□ -1.78
CCDC88A-213ENST00000476903 C3orf22Q8N5N4 141 aa3.92□□□□□ -1.78
CCDC88A-213ENST00000476903 SMCR5Q8TEV8 140 aa3.92□□□□□ -1.78
CCDC88A-213ENST00000476903 RETNLBQ9BQ08 111 aa3.92□□□□□ -1.78
CCDC88A-213ENST00000476903 A0A1B0GWB2 263 aa3.91□□□□□ -1.78
CCDC88A-213ENST00000476903 SEC61BP60468 96 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-213ENST00000476903 S100A7L2Q5SY68 101 aa3.91□□□□□ -1.78
CCDC88A-213ENST00000476903 KRTAP5-2Q701N4 177 aa3.91□□□□□ -1.78
CCDC88A-213ENST00000476903 A0A0J9YXY3 114 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 SYS1-DBNDD2H3BUS1 97 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BKO60814 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 IGLV6-57P01721 117 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BJP06899 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BOP23527 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BBP33778 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BDP58876 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BCP62807 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST2H2BEQ16778 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 LINC00483Q53H64 154 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST3H2BBQ8N257 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BHQ93079 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BNQ99877 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BMQ99879 126 aa3.9□□□□□ -1.79
CCDC88A-213ENST00000476903 IGLV7-46A0A075B6I9 117 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 TRAV23DV6A0A075B6W5 121 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 NPC2P61916 151 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 TPRXLQ17RH7 258 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 ADAMTSL4-AS1Q5T5F5 129 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 LYRM7Q5U5X0 104 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 LINC01545Q5VT33 79 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 Q6ZRX8 168 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 Q8NBF4 154 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 VAMP8Q9BV40 100 aa3.89□□□□□ -1.79
CCDC88A-213ENST00000476903 ZNF73O43830 326 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 TIMM17BO60830 172 aa3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 ERC2-IT1O76042 136 aa3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 SOSTDC1Q6X4U4 206 aa3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 Q6ZVQ6 151 aa3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 FP248Q71RG6 208 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 ANKRD29Q8N6D5 301 aa3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 COPS9Q8WXC6 57 aa3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 Q9BRP9 147 aa3.88□□□□□ -1.79
CCDC88A-213ENST00000476903 IGLV9-49A0A0B4J1Y8 123 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 ZNF815PA8K554 130 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 SPINK1P00995 79 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 HINT1P49773 126 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 MOBPQ13875 183 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 Q6ZVH6 145 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 LINC00308Q8TCZ7 52 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 RAB37Q96AX2 223 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 IMUPQ9GZP8 106 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 UQCR10Q9UDW1 63 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 MUC2Q02817 5179 aa3.87□□□□□ -1.79
CCDC88A-213ENST00000476903 C3orf79P0CE67 100 aa3.86□□□□□ -1.79
CCDC88A-213ENST00000476903 PSMB2P49721 201 aa3.86□□□□□ -1.79
CCDC88A-213ENST00000476903 TMEM258P61165 79 aa3.86□□□□□ -1.79
CCDC88A-213ENST00000476903 COA6Q5JTJ3 125 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-213ENST00000476903 SSBP3-AS1Q7Z2R9 100 aa3.86□□□□□ -1.79
CCDC88A-213ENST00000476903 LITAFQ99732 161 aa3.86□□□□□ -1.79
CCDC88A-213ENST00000476903 IFITM1P13164 125 aa3.85□□□□□ -1.79
CCDC88A-213ENST00000476903 KRTDAPP60985 99 aa3.85□□□□□ -1.79
CCDC88A-213ENST00000476903 RPS29P62273 56 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-213ENST00000476903 LCE3CQ5T5A8 94 aa3.85□□□□□ -1.79
CCDC88A-213ENST00000476903 C9orf153Q5TBE3 101 aa3.85□□□□□ -1.79
CCDC88A-213ENST00000476903 HRCT1Q6UXD1 115 aa3.85□□□□□ -1.79
CCDC88A-213ENST00000476903 NDUFV3P56181 108 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-213ENST00000476903 NOTCH2NLQ7Z3S9 236 aa3.84□□□□□ -1.79
CCDC88A-213ENST00000476903 PRR15Q8IV56 129 aa3.84□□□□□ -1.79
CCDC88A-213ENST00000476903 HIST1H2BLQ99880 126 aa3.84□□□□□ -1.79
CCDC88A-213ENST00000476903 TTTY13Q9BZ97 58 aa3.84□□□□□ -1.79
CCDC88A-213ENST00000476903 DHRS4-AS1Q9P1J3 65 aa3.84□□□□□ -1.79
CCDC88A-213ENST00000476903 SLC25A20O43772 301 aa3.83□□□□□ -1.8
CCDC88A-213ENST00000476903 Q5XG85 94 aa3.83□□□□□ -1.8
CCDC88A-213ENST00000476903 SLC25A34Q6PIV7 304 aa3.83□□□□□ -1.8
CCDC88A-213ENST00000476903 Q8N377 158 aa3.83□□□□□ -1.8
CCDC88A-213ENST00000476903 ST20-AS1Q8NBB2 130 aa3.83□□□□□ -1.8
CCDC88A-213ENST00000476903 KRTAP13-3Q3SY46 172 aa3.82□□□□□ -1.8
CCDC88A-213ENST00000476903 TRBV7-6A0A0J9YX20 115 aa3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 F8W1H4 67 aa3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 K7EP34 96 aa3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 UQCRQO14949 82 aa3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 SPRR1BP22528 89 aa3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 COX7BP24311 80 aa3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 ELOF1P60002 83 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 C6orf99Q4VX62 202 aa3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 ATOH7Q8N100 152 aa3.81□□□□□ -1.8
CCDC88A-213ENST00000476903 C8orf87E5RJ46 101 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms