RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TEX49A0A1B0GTD5 131 aa3.93□□□□□ -1.78
VPS41-208ENST00000448833 COX7BP24311 80 aa3.93□□□□□ -1.78
VPS41-208ENST00000448833 COA6Q5JTJ3 125 aaKnown RBP3.93□□□□□ -1.78
VPS41-208ENST00000448833 LINC01545Q5VT33 79 aa3.93□□□□□ -1.78
VPS41-208ENST00000448833 Q6ZVH6 145 aa3.93□□□□□ -1.78
VPS41-208ENST00000448833 ST20-AS1Q8NBB2 130 aa3.93□□□□□ -1.78
VPS41-208ENST00000448833 PRO1933Q9H354 126 aa3.93□□□□□ -1.78
VPS41-208ENST00000448833 C20orf202A1L168 122 aa3.92□□□□□ -1.78
VPS41-208ENST00000448833 TRIAP1O43715 76 aa3.92□□□□□ -1.78
VPS41-208ENST00000448833 IFITM1P13164 125 aa3.92□□□□□ -1.78
VPS41-208ENST00000448833 ELOF1P60002 83 aaKnown RBP3.92□□□□□ -1.78
VPS41-208ENST00000448833 SCGB1D4Q6XE38 83 aa3.92□□□□□ -1.78
VPS41-208ENST00000448833 HIST3H2BBQ8N257 126 aa3.92□□□□□ -1.78
VPS41-208ENST00000448833 LITAFQ99732 161 aa3.92□□□□□ -1.78
VPS41-208ENST00000448833 A0A1B0GWB2 263 aa3.91□□□□□ -1.78
VPS41-208ENST00000448833 H7C2G1 150 aa3.91□□□□□ -1.78
VPS41-208ENST00000448833 SMIM6P0DI80 62 aa3.91□□□□□ -1.78
VPS41-208ENST00000448833 C6orf99Q4VX62 202 aa3.91□□□□□ -1.78
VPS41-208ENST00000448833 MTURNQ8N3F0 131 aa3.91□□□□□ -1.78
VPS41-208ENST00000448833 NHP2Q9NX24 153 aaKnown RBP3.91□□□□□ -1.78
VPS41-208ENST00000448833 A0A1B0GV72 72 aa3.9□□□□□ -1.79
VPS41-208ENST00000448833 DEFB105AQ8NG35 78 aa3.9□□□□□ -1.79
VPS41-208ENST00000448833 HIST1H2BLQ99880 126 aa3.9□□□□□ -1.79
VPS41-208ENST00000448833 TRAV13-2A0A0B4J235 113 aa3.89□□□□□ -1.79
VPS41-208ENST00000448833 A6NDN8 102 aa3.89□□□□□ -1.79
VPS41-208ENST00000448833 Q5XG85 94 aa3.89□□□□□ -1.79
VPS41-208ENST00000448833 HRCT1Q6UXD1 115 aa3.89□□□□□ -1.79
VPS41-208ENST00000448833 TCL1BO95988 128 aa3.88□□□□□ -1.79
VPS41-208ENST00000448833 C3orf79P0CE67 100 aa3.88□□□□□ -1.79
VPS41-208ENST00000448833 KRTDAPP60985 99 aa3.88□□□□□ -1.79
VPS41-208ENST00000448833 Q1RN00 199 aa3.88□□□□□ -1.79
VPS41-208ENST00000448833 IGLV5-48A0A075B6I7 105 aa3.87□□□□□ -1.79
VPS41-208ENST00000448833 C12orf57Q99622 126 aa3.87□□□□□ -1.79
VPS41-208ENST00000448833 IGLV8-61A0A075B6I0 122 aa3.86□□□□□ -1.79
VPS41-208ENST00000448833 F8WEM9 126 aa3.86□□□□□ -1.79
VPS41-208ENST00000448833 CFC1BP0CG36 223 aa3.86□□□□□ -1.79
VPS41-208ENST00000448833 SCGB1A1P11684 91 aa3.86□□□□□ -1.79
VPS41-208ENST00000448833 KRTAP4-1Q9BYQ7 146 aa3.86□□□□□ -1.79
VPS41-208ENST00000448833 C9orf92A6NGG3 77 aa3.85□□□□□ -1.79
VPS41-208ENST00000448833 PCOTHQ58A44 107 aa3.85□□□□□ -1.79
VPS41-208ENST00000448833 MUSTN1Q8IVN3 82 aa3.85□□□□□ -1.79
VPS41-208ENST00000448833 TTTY13Q9BZ97 58 aa3.85□□□□□ -1.79
VPS41-208ENST00000448833 TSTD3H0UI37 97 aa3.84□□□□□ -1.79
VPS41-208ENST00000448833 C1orf195Q5TG92 126 aa3.84□□□□□ -1.79
VPS41-208ENST00000448833 SMIM29Q86T20 159 aa3.84□□□□□ -1.79
VPS41-208ENST00000448833 VAMP8Q9BV40 100 aa3.84□□□□□ -1.79
VPS41-208ENST00000448833 SNCGO76070 127 aa3.83□□□□□ -1.8
VPS41-208ENST00000448833 PYY3Q5JQD4 70 aa3.83□□□□□ -1.8
VPS41-208ENST00000448833 Q6JHZ5 121 aa3.83□□□□□ -1.8
VPS41-208ENST00000448833 SMIM11BQ8TCY0 68 aa3.83□□□□□ -1.8
VPS41-208ENST00000448833 V9GYY9 64 aa3.83□□□□□ -1.8
VPS41-208ENST00000448833 PPDPFLQ8WWR9 84 aa3.82□□□□□ -1.8
VPS41-208ENST00000448833 hADV29S1A0JD25 119 aa3.81□□□□□ -1.8
VPS41-208ENST00000448833 RPL37P61927 97 aaKnown RBP3.81□□□□□ -1.8
VPS41-208ENST00000448833 LINC00575Q6W349 94 aa3.81□□□□□ -1.8
VPS41-208ENST00000448833 PCP2Q8IVA1 136 aa3.81□□□□□ -1.8
VPS41-208ENST00000448833 ATOH7Q8N100 152 aa3.81□□□□□ -1.8
VPS41-208ENST00000448833 BVES-AS1Q5T3Y7 98 aa3.8□□□□□ -1.8
VPS41-208ENST00000448833 CLEC2BQ92478 149 aa3.8□□□□□ -1.8
VPS41-208ENST00000448833 SPATA45Q537H7 98 aa3.79□□□□□ -1.8
VPS41-208ENST00000448833 OCIAD2Q56VL3 154 aa3.79□□□□□ -1.8
VPS41-208ENST00000448833 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.79□□□□□ -1.8
VPS41-208ENST00000448833 COX6B2Q6YFQ2 88 aa3.79□□□□□ -1.8
VPS41-208ENST00000448833 Q6ZQY7 126 aa3.79□□□□□ -1.8
VPS41-208ENST00000448833 SNHG12Q9BXW3 62 aa3.79□□□□□ -1.8
VPS41-208ENST00000448833 PAM16Q9Y3D7 125 aa3.79□□□□□ -1.8
VPS41-208ENST00000448833 M0R2T5 61 aa3.78□□□□□ -1.8
VPS41-208ENST00000448833 MT1HP80294 61 aa3.78□□□□□ -1.8
VPS41-208ENST00000448833 ATP11AUNQ6ZP68 121 aa3.78□□□□□ -1.8
VPS41-208ENST00000448833 FSIP2Q5CZC0 6907 aa3.78□□□□□ -1.8
VPS41-208ENST00000448833 TRBV7-7A0A0K0K1E9 115 aa3.77□□□□□ -1.81
VPS41-208ENST00000448833 A0A1B0GV90 55 aa3.77□□□□□ -1.81
VPS41-208ENST00000448833 KRTAP19-2Q3LHN2 52 aa3.77□□□□□ -1.81
VPS41-208ENST00000448833 HIST1H4GQ99525 98 aa3.77□□□□□ -1.81
VPS41-208ENST00000448833 UQCR10Q9UDW1 63 aa3.77□□□□□ -1.81
VPS41-208ENST00000448833 CRCT1Q9UGL9 99 aa3.77□□□□□ -1.81
VPS41-208ENST00000448833 SS18L2Q9UHA2 77 aa3.77□□□□□ -1.81
VPS41-208ENST00000448833 A0A0G2JQZ4 141 aa3.76□□□□□ -1.81
VPS41-208ENST00000448833 LST1O00453 97 aa3.76□□□□□ -1.81
VPS41-208ENST00000448833 H0YGX0 51 aa3.75□□□□□ -1.81
VPS41-208ENST00000448833 UBE2V1Q13404 147 aa3.75□□□□□ -1.81
VPS41-208ENST00000448833 IGFL1Q6UW32 110 aa3.75□□□□□ -1.81
VPS41-208ENST00000448833 Q75L30 129 aa3.75□□□□□ -1.81
VPS41-208ENST00000448833 DLEU1O43261 78 aa3.74□□□□□ -1.81
VPS41-208ENST00000448833 COX8AP10176 69 aa3.73□□□□□ -1.81
VPS41-208ENST00000448833 KRTAP10-6P60371 365 aaPredicted RBP3.73□□□□□ -1.81
VPS41-208ENST00000448833 Q6Q795 121 aa3.73□□□□□ -1.81
VPS41-208ENST00000448833 TEN1Q86WV5 123 aa3.73□□□□□ -1.81
VPS41-208ENST00000448833 RAB37Q96AX2 223 aa3.73□□□□□ -1.81
VPS41-208ENST00000448833 C14orf144Q96I85 54 aa3.73□□□□□ -1.81
VPS41-208ENST00000448833 OBSCN-AS1Q96MR7 158 aa3.73□□□□□ -1.81
VPS41-208ENST00000448833 M0R143 59 aa3.72□□□□□ -1.81
VPS41-208ENST00000448833 TRBV20-1A0A075B6N2 111 aa3.71□□□□□ -1.82
VPS41-208ENST00000448833 A0A0A0MQY5 61 aa3.71□□□□□ -1.82
VPS41-208ENST00000448833 A0A1B0GX51 115 aa3.71□□□□□ -1.82
VPS41-208ENST00000448833 H3BQ85 93 aa3.71□□□□□ -1.82
VPS41-208ENST00000448833 NDUFV3P56181 108 aaKnown RBP3.71□□□□□ -1.82
VPS41-208ENST00000448833 Q96NJ1 140 aa3.71□□□□□ -1.82
VPS41-208ENST00000448833 VPS25Q9BRG1 176 aa3.71□□□□□ -1.82
VPS41-208ENST00000448833 A0A0B4J2C4 111 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms