RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 A0A096LNT2 108 aa7.86□□□□□ -1.15
CCDC88A-207ENST00000436346 A0A0D9SG42 100 aa7.86□□□□□ -1.15
CCDC88A-207ENST00000436346 GIG44P09565 113 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-207ENST00000436346 UQCR11O14957 56 aa7.85□□□□□ -1.15
CCDC88A-207ENST00000436346 ERC2-IT1O76042 136 aa7.85□□□□□ -1.15
CCDC88A-207ENST00000436346 ASH1LQ9NR48 2969 aaKnown RBP7.84□□□□□ -1.15
CCDC88A-207ENST00000436346 KLK9Q2XQG4 91 aa7.83□□□□□ -1.16
CCDC88A-207ENST00000436346 MIR22HGQ0VDD5 57 aa7.83□□□□□ -1.16
CCDC88A-207ENST00000436346 ZZEF1O43149 2961 aa7.82□□□□□ -1.16
CCDC88A-207ENST00000436346 Q8N377 158 aa7.82□□□□□ -1.16
CCDC88A-207ENST00000436346 NBEAQ8NFP9 2946 aa7.82□□□□□ -1.16
CCDC88A-207ENST00000436346 Q8N1X5 172 aa7.81□□□□□ -1.16
CCDC88A-207ENST00000436346 BOD1L1Q8NFC6 3051 aa7.81□□□□□ -1.16
CCDC88A-207ENST00000436346 TLX1NBP0CAT3 122 aa7.81□□□□□ -1.16
CCDC88A-207ENST00000436346 SZT2Q5T011 3432 aa7.81□□□□□ -1.16
CCDC88A-207ENST00000436346 C9orf163Q8N9P6 203 aa7.8□□□□□ -1.16
CCDC88A-207ENST00000436346 SPRR4Q96PI1 79 aa7.8□□□□□ -1.16
CCDC88A-207ENST00000436346 PLA2G2DQ9UNK4 145 aa7.8□□□□□ -1.16
CCDC88A-207ENST00000436346 M0R2T5 61 aa7.8□□□□□ -1.16
CCDC88A-207ENST00000436346 CNBPP62633 177 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-207ENST00000436346 TENM1Q9UKZ4 2725 aa7.79□□□□□ -1.16
CCDC88A-207ENST00000436346 CASC10Q5T4H9 136 aa7.79□□□□□ -1.16
CCDC88A-207ENST00000436346 DMXL2Q8TDJ6 3036 aa7.78□□□□□ -1.16
CCDC88A-207ENST00000436346 IGLV5-48A0A075B6I7 105 aa7.78□□□□□ -1.16
CCDC88A-207ENST00000436346 CELSR2Q9HCU4 2923 aa7.78□□□□□ -1.16
CCDC88A-207ENST00000436346 TNRC18O15417 2968 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-207ENST00000436346 NF1P21359 2839 aa7.76□□□□□ -1.17
CCDC88A-207ENST00000436346 LINC00612Q8N6U2 182 aa7.75□□□□□ -1.17
CCDC88A-207ENST00000436346 UNC80Q8N2C7 3258 aa7.75□□□□□ -1.17
CCDC88A-207ENST00000436346 EIF4EBP3O60516 100 aaPredicted RBP7.74□□□□□ -1.17
CCDC88A-207ENST00000436346 KRTAP1-3Q8IUG1 177 aa7.74□□□□□ -1.17
CCDC88A-207ENST00000436346 Q6ZSA8 131 aa7.74□□□□□ -1.17
CCDC88A-207ENST00000436346 ZNF575Q86XF7 245 aa7.74□□□□□ -1.17
CCDC88A-207ENST00000436346 A8MUN3 132 aa7.73□□□□□ -1.17
CCDC88A-207ENST00000436346 CYP4F30PQ9H0H9 118 aa7.73□□□□□ -1.17
CCDC88A-207ENST00000436346 REV3LO60673 3130 aa7.72□□□□□ -1.17
CCDC88A-207ENST00000436346 NIPBLQ6KC79 2804 aaeCLIP7.72□□□□□ -1.171e-10■□□□□ 8.6
CCDC88A-207ENST00000436346 COL12A1Q99715 3063 aa7.71□□□□□ -1.17
CCDC88A-207ENST00000436346 CDC42SE1Q9NRR8 79 aa7.71□□□□□ -1.18
CCDC88A-207ENST00000436346 FAM104AQ969W3 186 aa7.69□□□□□ -1.18
CCDC88A-207ENST00000436346 WDFY3Q8IZQ1 3526 aa7.68□□□□□ -1.18
CCDC88A-207ENST00000436346 KRTAP1-1Q07627 177 aa7.68□□□□□ -1.18
CCDC88A-207ENST00000436346 TNP2Q05952 138 aa7.68□□□□□ -1.18
CCDC88A-207ENST00000436346 IGLV7-46A0A075B6I9 117 aa7.67□□□□□ -1.18
CCDC88A-207ENST00000436346 ADGRG4Q8IZF6 3080 aa7.67□□□□□ -1.18
CCDC88A-207ENST00000436346 VCANP13611 3396 aa7.67□□□□□ -1.18
CCDC88A-207ENST00000436346 KLKP1Q107X0 134 aa7.66□□□□□ -1.18
CCDC88A-207ENST00000436346 ZANQ9Y493 2812 aa7.65□□□□□ -1.18
CCDC88A-207ENST00000436346 PRR26Q8N8Z3 221 aa7.64□□□□□ -1.19
CCDC88A-207ENST00000436346 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.63□□□□□ -1.19
CCDC88A-207ENST00000436346 SPEGQ15772 3267 aa7.61□□□□□ -1.19
CCDC88A-207ENST00000436346 CAMK2N1Q7Z7J9 78 aa7.6□□□□□ -1.19
CCDC88A-207ENST00000436346 SPANXA2-OT1Q8N9U9 137 aa7.6□□□□□ -1.19
CCDC88A-207ENST00000436346 CD164Q04900 197 aa7.6□□□□□ -1.19
CCDC88A-207ENST00000436346 H7BZZ5 65 aa7.59□□□□□ -1.19
CCDC88A-207ENST00000436346 LINC00483Q53H64 154 aa7.58□□□□□ -1.2
CCDC88A-207ENST00000436346 A0A1W2PNM2 257 aa7.57□□□□□ -1.2
CCDC88A-207ENST00000436346 LUZP6Q538Z0 58 aa7.57□□□□□ -1.2
CCDC88A-207ENST00000436346 S4R3F8 94 aa7.57□□□□□ -1.2
CCDC88A-207ENST00000436346 CFAP47Q6ZTR5 3102 aa7.54□□□□□ -1.2
CCDC88A-207ENST00000436346 FAM229BQ4G0N7 80 aa7.54□□□□□ -1.2
CCDC88A-207ENST00000436346 KTN1-AS1Q86SY8 53 aa7.54□□□□□ -1.2
CCDC88A-207ENST00000436346 ATMQ13315 3056 aa7.53□□□□□ -1.2
CCDC88A-207ENST00000436346 DCHS2Q6V1P9 2916 aa7.53□□□□□ -1.2
CCDC88A-207ENST00000436346 EYSQ5T1H1 3165 aa7.53□□□□□ -1.2
CCDC88A-207ENST00000436346 FBN2P35556 2912 aa7.53□□□□□ -1.2
CCDC88A-207ENST00000436346 NBPF19A0A087WUL8 3843 aa7.52□□□□□ -1.21
CCDC88A-207ENST00000436346 Q1T7F1 81 aa7.5□□□□□ -1.21
CCDC88A-207ENST00000436346 Q5VSD8 79 aa7.5□□□□□ -1.21
CCDC88A-207ENST00000436346 HRES1P13985 223 aa7.49□□□□□ -1.21
CCDC88A-207ENST00000436346 A0A1B0GU33 70 aa7.49□□□□□ -1.21
CCDC88A-207ENST00000436346 TENM3Q9P273 2699 aa7.48□□□□□ -1.21
CCDC88A-207ENST00000436346 HRNRQ86YZ3 2850 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-207ENST00000436346 DMXL1Q9Y485 3027 aa7.46□□□□□ -1.22
CCDC88A-207ENST00000436346 VWFP04275 2813 aa7.46□□□□□ -1.22
CCDC88A-207ENST00000436346 MYO15AQ9UKN7 3530 aa7.45□□□□□ -1.22
CCDC88A-207ENST00000436346 ZCCHC13Q8WW36 166 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-207ENST00000436346 PLAC8Q9NZF1 115 aa7.44□□□□□ -1.22
CCDC88A-207ENST00000436346 OCR1Q9BZK8 76 aa7.44□□□□□ -1.22
CCDC88A-207ENST00000436346 CSAG1Q6PB30 78 aa7.42□□□□□ -1.22
CCDC88A-207ENST00000436346 WIPF1O43516 503 aa7.41□□□□□ -1.22
CCDC88A-207ENST00000436346 SEC61BP60468 96 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-207ENST00000436346 PKD1L1Q8TDX9 2849 aa7.39□□□□□ -1.23
CCDC88A-207ENST00000436346 LCA10Q71F78 164 aa7.38□□□□□ -1.23
CCDC88A-207ENST00000436346 R4GN34 69 aa7.37□□□□□ -1.23
CCDC88A-207ENST00000436346 LAMA5O15230 3695 aa7.37□□□□□ -1.23
CCDC88A-207ENST00000436346 TENM4Q6N022 2769 aa7.36□□□□□ -1.23
CCDC88A-207ENST00000436346 PDZD2O15018 2839 aa7.35□□□□□ -1.23
CCDC88A-207ENST00000436346 ASPMQ8IZT6 3477 aa7.34□□□□□ -1.23
CCDC88A-207ENST00000436346 TGP01266 2768 aa7.34□□□□□ -1.23
CCDC88A-207ENST00000436346 MXRA5Q9NR99 2828 aa7.34□□□□□ -1.24
CCDC88A-207ENST00000436346 SPENQ96T58 3664 aaKnown RBP7.33□□□□□ -1.24
CCDC88A-207ENST00000436346 Q5W150 140 aa7.33□□□□□ -1.24
CCDC88A-207ENST00000436346 CELSR1Q9NYQ6 3014 aa7.32□□□□□ -1.24
CCDC88A-207ENST00000436346 KRTAP1-5Q9BYS1 174 aa7.32□□□□□ -1.24
CCDC88A-207ENST00000436346 Q75L30 129 aa7.32□□□□□ -1.24
CCDC88A-207ENST00000436346 DMAC1Q96GE9 116 aa7.32□□□□□ -1.24
CCDC88A-207ENST00000436346 MMP24-AS1A0A0U1RRL7 71 aa7.31□□□□□ -1.24
CCDC88A-207ENST00000436346 LCE6AA0A183 80 aa7.3□□□□□ -1.24
CCDC88A-207ENST00000436346 SPINK7P58062 85 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms