RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 AMELXQ99217 191 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 MGST2Q99735 147 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 FSIP2Q5CZC0 6907 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 C9JAW5 83 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 K7EQZ3 153 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 MRPS36P82909 103 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 TRBV10-3A0A0K0K1G6 114 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 A0A1W2PPM0 123 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 COX17Q14061 63 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 HIGD1CA8MV81 97 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 CCKP06307 115 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 C20orf78Q9BR46 151 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 TRAV12-1A0A0B4J245 112 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 CXCL1P09341 107 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 RPS19P39019 145 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 RPL37P61927 97 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 KLKP1Q107X0 134 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 KRTAP8-1Q8IUC2 63 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 FUNDC1Q8IVP5 155 aa1.53□□□□□ -2.16
CCDC88A-205ENST00000426576 IGLV5-45A0A087WSX0 123 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 SPRR1BP22528 89 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 SPRR2DP22532 72 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 SPINK7P58062 85 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 KRTAP10-7P60409 375 aaPredicted RBP1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 PP632Q6XCG6 107 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 DSTQ03001 7570 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 CLLU1Q5K131 121 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 RPL39LQ96EH5 51 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 BIRC6Q9NR09 4857 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 D6R8Y8 96 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 SMKR1H3BMG3 65 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 C12orf73Q69YU5 71 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 SPANXDQ9BXN6 97 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 UBL5Q9BZL1 73 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 BPY2O14599 106 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 C11orf1Q9H5F2 150 aa1.52□□□□□ -2.17
CCDC88A-205ENST00000426576 ZNF22P17026 224 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-205ENST00000426576 POLR2KP53803 58 aaKnown RBP1.51□□□□□ -2.17
CCDC88A-205ENST00000426576 CDC42SE2Q9NRR3 84 aa1.51□□□□□ -2.17
CCDC88A-205ENST00000426576 C6orf48Q9UBA6 75 aa1.51□□□□□ -2.17
CCDC88A-205ENST00000426576 H0YAA0 97 aa1.51□□□□□ -2.17
CCDC88A-205ENST00000426576 LYRM1O43325 122 aa1.51□□□□□ -2.17
CCDC88A-205ENST00000426576 ORMDL1Q9P0S3 153 aa1.51□□□□□ -2.17
CCDC88A-205ENST00000426576 Q6ZQY7 126 aa1.51□□□□□ -2.17
CCDC88A-205ENST00000426576 GIG44P09565 113 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 CD164Q04900 197 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 KRTAP3-1Q9BYR8 98 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 UBR4Q5T4S7 5183 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 Q5XG85 94 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 HERC2O95714 4834 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 C9orf170A2RU37 121 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 ATXN8Q156A1 80 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 TEN1Q86WV5 123 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 H3BUT2 72 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 NDUFB6O95139 128 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 DEFB116Q30KQ4 102 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 CDKN2A-AS1Q9UH64 79 aa1.5□□□□□ -2.17
CCDC88A-205ENST00000426576 TINCRA0A1B0GVN0 87 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 ZNF80P51504 273 aaPredicted RBP1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 HIST1H4AP62805 103 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 LAMTOR2Q9Y2Q5 125 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 SPCS1Q9Y6A9 102 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 DPM2O94777 84 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 RPL39P62891 51 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 PPP1R1CQ8WVI7 109 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 IFI27L1Q96BM0 104 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 STAG3L2P0CL84 134 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 LCE1AQ5T7P2 110 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 HERC1Q15751 4861 aa1.49□□□□□ -2.17
CCDC88A-205ENST00000426576 H0YGX0 51 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 M0QY20 66 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 LEPROTL1O95214 131 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 H1FX-AS1Q4G0G2 97 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 PRR15LQ9BU68 103 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 FAM104BQ5XKR9 115 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 SPANXCQ9NY87 97 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 XAF1Q6GPH4 301 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 C1orf64Q8NEQ6 169 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 PTH2Q96A98 100 aa1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 FLGP20930 4061 aaPredicted RBP1.48□□□□□ -2.17
CCDC88A-205ENST00000426576 KRTAP27-1Q3LI81 207 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 LPAP08519 4548 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 CCL20P78556 96 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 UBE2V1Q13404 147 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 NOTCH2NLQ7Z3S9 236 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 DNAH5Q8TE73 4624 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 LINC00694P0DN24 101 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 Q6ZRX8 168 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 S100A14Q9HCY8 104 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 NEBP20929 6669 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 IGLC2P0DOY2 106 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 SMIM4Q8WVI0 70 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 FAM104AQ969W3 186 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 RPS10P5Q9NQ39 176 aa1.47□□□□□ -2.17
CCDC88A-205ENST00000426576 RTBDNQ9BSG5 229 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 SMIM29Q86T20 159 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms