RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 IGFL1Q6UW32 110 aa13.49□□□□□ -0.25
USP48-205ENST00000421625 MGAM2Q2M2H8 2515 aa13.49□□□□□ -0.25
USP48-205ENST00000421625 CYP4F30PQ9H0H9 118 aa13.48□□□□□ -0.25
USP48-205ENST00000421625 PMAIP1Q13794 54 aa13.47□□□□□ -0.25
USP48-205ENST00000421625 REG3GQ6UW15 175 aa13.47□□□□□ -0.25
USP48-205ENST00000421625 TRAV22A0A0B4J277 110 aa13.46□□□□□ -0.25
USP48-205ENST00000421625 C11orf45Q8TAV5 145 aa13.45□□□□□ -0.26
USP48-205ENST00000421625 A8MU10 97 aa13.45□□□□□ -0.26
USP48-205ENST00000421625 DNAH1Q9P2D7 4330 aa13.44□□□□□ -0.26
USP48-205ENST00000421625 RPL37AP61513 92 aaKnown RBP13.44□□□□□ -0.26
USP48-205ENST00000421625 A0A087WSZ3 146 aa13.44□□□□□ -0.26
USP48-205ENST00000421625 PRR15Q8IV56 129 aa13.44□□□□□ -0.26
USP48-205ENST00000421625 PRLHP81277 87 aa13.41□□□□□ -0.26
USP48-205ENST00000421625 LINC00588Q9Y4M8 146 aa13.41□□□□□ -0.26
USP48-205ENST00000421625 LINC00208Q96KT6 92 aa13.4□□□□□ -0.27
USP48-205ENST00000421625 MP68P56378 58 aa13.39□□□□□ -0.27
USP48-205ENST00000421625 NDUFB1O75438 58 aa13.38□□□□□ -0.27
USP48-205ENST00000421625 A8MUN3 132 aa13.36□□□□□ -0.27
USP48-205ENST00000421625 KRTAP29-1A8MX34 341 aaPredicted RBP13.34□□□□□ -0.27
USP48-205ENST00000421625 B9D2Q9BPU9 175 aa13.34□□□□□ -0.27
USP48-205ENST00000421625 SRRM2Q9UQ35 2752 aaKnown RBP13.32□□□□□ -0.28
USP48-205ENST00000421625 IGLV8-61A0A075B6I0 122 aa13.31□□□□□ -0.28
USP48-205ENST00000421625 IGKV2-24A0A0C4DH68 120 aa13.31□□□□□ -0.28
USP48-205ENST00000421625 H0Y9P7 68 aa13.31□□□□□ -0.28
USP48-205ENST00000421625 A0A096LNI7 61 aa13.29□□□□□ -0.28
USP48-205ENST00000421625 CASC2Q6XLA1 102 aa13.29□□□□□ -0.28
USP48-205ENST00000421625 UBE2AP49459 152 aa13.28□□□□□ -0.28
USP48-205ENST00000421625 CNBPP62633 177 aaKnown RBP13.28□□□□□ -0.28
USP48-205ENST00000421625 DNAH10Q8IVF4 4471 aa13.27□□□□□ -0.29
USP48-205ENST00000421625 DNAH3Q8TD57 4116 aa13.27□□□□□ -0.29
USP48-205ENST00000421625 Q5VV11 94 aa13.26□□□□□ -0.29
USP48-205ENST00000421625 SPANXA2-OT1Q8N9U9 137 aa13.22□□□□□ -0.29
USP48-205ENST00000421625 KRTAP11-1Q8IUC1 163 aa13.21□□□□□ -0.29
USP48-205ENST00000421625 Q8N9P0 234 aaPredicted RBP13.2□□□□□ -0.3
USP48-205ENST00000421625 C16orf90A8MZG2 172 aa13.19□□□□□ -0.3
USP48-205ENST00000421625 A8MWP4 228 aa13.19□□□□□ -0.3
USP48-205ENST00000421625 LINC00472Q9H8W2 130 aa13.18□□□□□ -0.3
USP48-205ENST00000421625 STAB2Q8WWQ8 2551 aa13.18□□□□□ -0.3
USP48-205ENST00000421625 H3BPC8 53 aa13.17□□□□□ -0.3
USP48-205ENST00000421625 C9orf163Q8N9P6 203 aa13.16□□□□□ -0.3
USP48-205ENST00000421625 PHF5AQ7RTV0 110 aaKnown RBP13.16□□□□□ -0.3
USP48-205ENST00000421625 LYSTQ99698 3801 aa13.14□□□□□ -0.31
USP48-205ENST00000421625 CHKB-CPT1BH3BT56 60 aa13.14□□□□□ -0.31
USP48-205ENST00000421625 K7EIL1 84 aa13.14□□□□□ -0.31
USP48-205ENST00000421625 CHTF8P0CG12 524 aa13.14□□□□□ -0.31
USP48-205ENST00000421625 PRR15LQ9BU68 103 aa13.14□□□□□ -0.31
USP48-205ENST00000421625 COL7A1Q02388 2944 aa13.14□□□□□ -0.31
USP48-205ENST00000421625 MDFIQ99750 246 aa13.13□□□□□ -0.31
USP48-205ENST00000421625 KRTAP1-5Q9BYS1 174 aa13.12□□□□□ -0.31
USP48-205ENST00000421625 H0Y9J4 135 aa13.12□□□□□ -0.31
USP48-205ENST00000421625 LIMD2Q9BT23 127 aa13.11□□□□□ -0.31
USP48-205ENST00000421625 SPTSSBQ8NFR3 76 aa13.1□□□□□ -0.31
USP48-205ENST00000421625 MMP24-AS1A0A0U1RRL7 71 aa13.1□□□□□ -0.31
USP48-205ENST00000421625 SPRR1BP22528 89 aa13.09□□□□□ -0.31
USP48-205ENST00000421625 HUWE1Q7Z6Z7 4374 aaKnown RBP13.08□□□□□ -0.31
USP48-205ENST00000421625 CD164Q04900 197 aa13.08□□□□□ -0.32
USP48-205ENST00000421625 CSMD3Q7Z407 3707 aa13.08□□□□□ -0.32
USP48-205ENST00000421625 COA5Q86WW8 74 aa13.08□□□□□ -0.32
USP48-205ENST00000421625 DNAH9Q9NYC9 4486 aa13.07□□□□□ -0.32
USP48-205ENST00000421625 TENM2Q9NT68 2774 aa13.05□□□□□ -0.32
USP48-205ENST00000421625 PCOTHQ58A44 107 aa13.04□□□□□ -0.32
USP48-205ENST00000421625 IGLV7-46A0A075B6I9 117 aa13.02□□□□□ -0.33
USP48-205ENST00000421625 RBM12B-AS1Q9P1G2 102 aa13.01□□□□□ -0.33
USP48-205ENST00000421625 LCA10Q71F78 164 aa12.99□□□□□ -0.33
USP48-205ENST00000421625 Q75L30 129 aa12.98□□□□□ -0.33
USP48-205ENST00000421625 A6NED7 52 aa12.95□□□□□ -0.34
USP48-205ENST00000421625 Q96NJ1 140 aa12.95□□□□□ -0.34
USP48-205ENST00000421625 LOC101927531A0A1B0GV80 90 aa12.95□□□□□ -0.34
USP48-205ENST00000421625 IGLV9-49A0A0B4J1Y8 123 aa12.92□□□□□ -0.34
USP48-205ENST00000421625 ASB16-AS1Q495Z4 193 aa12.9□□□□□ -0.34
USP48-205ENST00000421625 PANO1I0J062 215 aa12.9□□□□□ -0.34
USP48-205ENST00000421625 SPAG11AQ6PDA7 123 aa12.89□□□□□ -0.35
USP48-205ENST00000421625 KTN1-AS1Q86SY8 53 aa12.89□□□□□ -0.35
USP48-205ENST00000421625 KRTAP13-1Q8IUC0 172 aa12.88□□□□□ -0.35
USP48-205ENST00000421625 C8orf17Q9NRJ1 99 aa12.88□□□□□ -0.35
USP48-205ENST00000421625 TP53AIP1Q9HCN2 124 aa12.87□□□□□ -0.35
USP48-205ENST00000421625 MOBPQ13875 183 aa12.86□□□□□ -0.35
USP48-205ENST00000421625 ATP11AUNQ6ZP68 121 aa12.86□□□□□ -0.35
USP48-205ENST00000421625 NDUFS5O43920 106 aa12.85□□□□□ -0.35
USP48-205ENST00000421625 Q6ZR54 194 aa12.85□□□□□ -0.35
USP48-205ENST00000421625 UBE2DNLQ8IWF7 75 aa12.85□□□□□ -0.35
USP48-205ENST00000421625 C14orf177Q52M58 125 aa12.84□□□□□ -0.35
USP48-205ENST00000421625 IGHV6-1A0A0B4J1U7 121 aa12.84□□□□□ -0.35
USP48-205ENST00000421625 DNAH7Q8WXX0 4024 aa12.82□□□□□ -0.36
USP48-205ENST00000421625 LINC01558Q9Y6Z2 57 aa12.82□□□□□ -0.36
USP48-205ENST00000421625 DNHD1Q96M86 4753 aa12.81□□□□□ -0.36
USP48-205ENST00000421625 CDC42SE1Q9NRR8 79 aa12.8□□□□□ -0.36
USP48-205ENST00000421625 PLAC8Q9NZF1 115 aa12.8□□□□□ -0.36
USP48-205ENST00000421625 HRES1P13985 223 aa12.8□□□□□ -0.36
USP48-205ENST00000421625 A6NN06 94 aa12.79□□□□□ -0.36
USP48-205ENST00000421625 A0A1B0GVX0 72 aa12.78□□□□□ -0.36
USP48-205ENST00000421625 A0A087X002 238 aa12.77□□□□□ -0.37
USP48-205ENST00000421625 NOTCH2NLQ7Z3S9 236 aa12.77□□□□□ -0.37
USP48-205ENST00000421625 MEGF8Q7Z7M0 2845 aa12.76□□□□□ -0.37
USP48-205ENST00000421625 PRKDCP78527 4128 aaKnown RBP12.74□□□□□ -0.37
USP48-205ENST00000421625 SPINK7P58062 85 aa12.74□□□□□ -0.37
USP48-205ENST00000421625 MRPL34Q9BQ48 92 aaKnown RBP12.73□□□□□ -0.37
USP48-205ENST00000421625 APLNQ9ULZ1 77 aa12.73□□□□□ -0.37
USP48-205ENST00000421625 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.72□□□□□ -0.37
USP48-205ENST00000421625 ANAPC11Q9NYG5 84 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms