RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 RTL8CO15255 209 aa11.84□□□□□ -0.51
USP48-204ENST00000400301 BAHCC1Q9P281 2608 aa11.84□□□□□ -0.51
USP48-204ENST00000400301 PSPHP1O15172 72 aa11.83□□□□□ -0.52
USP48-204ENST00000400301 CNBPP62633 177 aaKnown RBP11.83□□□□□ -0.52
USP48-204ENST00000400301 CYSTM1Q9H1C7 97 aa11.83□□□□□ -0.52
USP48-204ENST00000400301 SPTSSBQ8NFR3 76 aa11.82□□□□□ -0.52
USP48-204ENST00000400301 APLNQ9ULZ1 77 aa11.81□□□□□ -0.52
USP48-204ENST00000400301 BSNQ9UPA5 3926 aa11.78□□□□□ -0.52
USP48-204ENST00000400301 A8MWP4 228 aa11.78□□□□□ -0.52
USP48-204ENST00000400301 A6NED7 52 aa11.75□□□□□ -0.53
USP48-204ENST00000400301 SPRR1AP35321 89 aa11.74□□□□□ -0.53
USP48-204ENST00000400301 TRAV22A0A0B4J277 110 aa11.74□□□□□ -0.53
USP48-204ENST00000400301 PRR15Q8IV56 129 aa11.74□□□□□ -0.53
USP48-204ENST00000400301 PRR15LQ9BU68 103 aa11.74□□□□□ -0.53
USP48-204ENST00000400301 OCR1Q9BZK8 76 aa11.73□□□□□ -0.53
USP48-204ENST00000400301 SPRR4Q96PI1 79 aa11.72□□□□□ -0.53
USP48-204ENST00000400301 TP53AIP1Q9HCN2 124 aa11.72□□□□□ -0.53
USP48-204ENST00000400301 H3BPC8 53 aa11.7□□□□□ -0.54
USP48-204ENST00000400301 A0A087WTM6 91 aa11.7□□□□□ -0.54
USP48-204ENST00000400301 RETNLBQ9BQ08 111 aa11.7□□□□□ -0.54
USP48-204ENST00000400301 DSCR10P59022 87 aa11.7□□□□□ -0.54
USP48-204ENST00000400301 PRO0628Q9UI54 55 aa11.69□□□□□ -0.54
USP48-204ENST00000400301 KRTAP1-5Q9BYS1 174 aa11.67□□□□□ -0.54
USP48-204ENST00000400301 C1orf195Q5TG92 126 aa11.65□□□□□ -0.54
USP48-204ENST00000400301 STAB2Q8WWQ8 2551 aa11.65□□□□□ -0.54
USP48-204ENST00000400301 ANAPC11Q9NYG5 84 aa11.64□□□□□ -0.55
USP48-204ENST00000400301 KMT2BQ9UMN6 2715 aaPredicted RBP11.63□□□□□ -0.55
USP48-204ENST00000400301 ZNF861PO60384 105 aa11.61□□□□□ -0.55
USP48-204ENST00000400301 PSORS1C2Q9UIG4 136 aa11.6□□□□□ -0.55
USP48-204ENST00000400301 TENM4Q6N022 2769 aa11.59□□□□□ -0.55
USP48-204ENST00000400301 CUBNO60494 3623 aa11.59□□□□□ -0.55
USP48-204ENST00000400301 C8orf17Q9NRJ1 99 aa11.57□□□□□ -0.56
USP48-204ENST00000400301 LIMD2Q9BT23 127 aa11.57□□□□□ -0.56
USP48-204ENST00000400301 KRTAP4-16G5E9R7 235 aaPredicted RBP11.56□□□□□ -0.56
USP48-204ENST00000400301 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.56□□□□□ -0.56
USP48-204ENST00000400301 SPACA4Q8TDM5 124 aa11.56□□□□□ -0.56
USP48-204ENST00000400301 MRPL34Q9BQ48 92 aaKnown RBP11.56□□□□□ -0.56
USP48-204ENST00000400301 TENM1Q9UKZ4 2725 aa11.55□□□□□ -0.56
USP48-204ENST00000400301 SEC61GP60059 68 aa11.54□□□□□ -0.56
USP48-204ENST00000400301 LINC00336Q6ZUF6 198 aa11.54□□□□□ -0.56
USP48-204ENST00000400301 TNP2Q05952 138 aa11.53□□□□□ -0.56
USP48-204ENST00000400301 PMAIP1Q13794 54 aa11.53□□□□□ -0.56
USP48-204ENST00000400301 PDZD2O15018 2839 aa11.52□□□□□ -0.56
USP48-204ENST00000400301 A0A1B0GVX0 72 aa11.52□□□□□ -0.57
USP48-204ENST00000400301 VWFP04275 2813 aa11.52□□□□□ -0.57
USP48-204ENST00000400301 SPAG11AQ6PDA7 123 aa11.49□□□□□ -0.57
USP48-204ENST00000400301 IGKV2D-30A0A075B6S6 120 aa11.49□□□□□ -0.57
USP48-204ENST00000400301 IGKV2-30P06310 120 aa11.49□□□□□ -0.57
USP48-204ENST00000400301 LINC00313P59037 77 aa11.48□□□□□ -0.57
USP48-204ENST00000400301 A8MUN3 132 aa11.48□□□□□ -0.57
USP48-204ENST00000400301 CSMD2Q7Z408 3487 aa11.48□□□□□ -0.57
USP48-204ENST00000400301 OXTP01178 125 aa11.47□□□□□ -0.57
USP48-204ENST00000400301 TENM3Q9P273 2699 aa11.47□□□□□ -0.57
USP48-204ENST00000400301 IGLV7-43P04211 117 aa11.46□□□□□ -0.58
USP48-204ENST00000400301 COA5Q86WW8 74 aa11.46□□□□□ -0.58
USP48-204ENST00000400301 IGLV8-61A0A075B6I0 122 aa11.45□□□□□ -0.58
USP48-204ENST00000400301 WWC2-AS2Q96NR7 200 aa11.44□□□□□ -0.58
USP48-204ENST00000400301 SSBP3-AS1Q7Z2R9 100 aa11.44□□□□□ -0.58
USP48-204ENST00000400301 LOC101927531A0A1B0GV80 90 aa11.43□□□□□ -0.58
USP48-204ENST00000400301 SPRR1BP22528 89 aa11.43□□□□□ -0.58
USP48-204ENST00000400301 Q5XG85 94 aa11.43□□□□□ -0.58
USP48-204ENST00000400301 KRTAP7-1Q8IUC3 87 aa11.42□□□□□ -0.58
USP48-204ENST00000400301 ACYP2P14621 99 aa11.4□□□□□ -0.58
USP48-204ENST00000400301 C8orf87E5RJ46 101 aa11.4□□□□□ -0.58
USP48-204ENST00000400301 TYMSOSQ8TAI1 123 aa11.39□□□□□ -0.59
USP48-204ENST00000400301 OTOGQ6ZRI0 2925 aa11.39□□□□□ -0.59
USP48-204ENST00000400301 SPINK1P00995 79 aa11.39□□□□□ -0.59
USP48-204ENST00000400301 FP248Q71RG6 208 aaPredicted RBP11.37□□□□□ -0.59
USP48-204ENST00000400301 LINC00472Q9H8W2 130 aa11.37□□□□□ -0.59
USP48-204ENST00000400301 SPANXA2-OT1Q8N9U9 137 aa11.36□□□□□ -0.59
USP48-204ENST00000400301 FAM229AH3BQW9 127 aa11.36□□□□□ -0.59
USP48-204ENST00000400301 NBPF19A0A087WUL8 3843 aa11.35□□□□□ -0.59
USP48-204ENST00000400301 PLA2G1BP04054 148 aaKnown RBP11.35□□□□□ -0.59
USP48-204ENST00000400301 FAM229BQ4G0N7 80 aa11.35□□□□□ -0.59
USP48-204ENST00000400301 PANO1I0J062 215 aa11.34□□□□□ -0.59
USP48-204ENST00000400301 MMP24-AS1A0A0U1RRL7 71 aa11.33□□□□□ -0.6
USP48-204ENST00000400301 CYP4F30PQ9H0H9 118 aa11.31□□□□□ -0.6
USP48-204ENST00000400301 C7orf65Q6ZTY9 151 aa11.3□□□□□ -0.6
USP48-204ENST00000400301 PLAC8Q9NZF1 115 aa11.29□□□□□ -0.6
USP48-204ENST00000400301 KRTAP11-1Q8IUC1 163 aa11.29□□□□□ -0.6
USP48-204ENST00000400301 Q96NJ1 140 aa11.27□□□□□ -0.61
USP48-204ENST00000400301 A0A1B0GU69 56 aa11.26□□□□□ -0.61
USP48-204ENST00000400301 FBN1P35555 2871 aaKnown RBP11.22□□□□□ -0.61
USP48-204ENST00000400301 Q1T7F1 81 aa11.22□□□□□ -0.61
USP48-204ENST00000400301 IGLV7-46A0A075B6I9 117 aa11.19□□□□□ -0.62
USP48-204ENST00000400301 KRTAP29-1A8MX34 341 aaPredicted RBP11.17□□□□□ -0.62
USP48-204ENST00000400301 VPS13CQ709C8 3753 aa11.16□□□□□ -0.62
USP48-204ENST00000400301 CD164Q04900 197 aa11.16□□□□□ -0.62
USP48-204ENST00000400301 SMR3BP02814 79 aaPredicted RBP11.15□□□□□ -0.62
USP48-204ENST00000400301 Q6ZRN7 208 aaPredicted RBP11.14□□□□□ -0.63
USP48-204ENST00000400301 ZCCHC13Q8WW36 166 aaKnown RBP11.13□□□□□ -0.63
USP48-204ENST00000400301 LINC00304Q8N9R0 145 aa11.13□□□□□ -0.63
USP48-204ENST00000400301 PRR26Q8N8Z3 221 aa11.12□□□□□ -0.63
USP48-204ENST00000400301 LINC00483Q53H64 154 aa11.11□□□□□ -0.63
USP48-204ENST00000400301 PKD1L1Q8TDX9 2849 aa11.1□□□□□ -0.63
USP48-204ENST00000400301 K7ERS5 55 aa11.1□□□□□ -0.63
USP48-204ENST00000400301 Q8N9P0 234 aaPredicted RBP11.08□□□□□ -0.64
USP48-204ENST00000400301 Q6ZR54 194 aa11.08□□□□□ -0.64
USP48-204ENST00000400301 ANK3Q12955 4377 aaKnown RBP11.05□□□□□ -0.64
USP48-204ENST00000400301 ZFHX3Q15911 3703 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms