RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 A0A1B0GU69 56 aa4.19□□□□□ -1.74
SMC1A-202ENST00000375340 TLX1NBP0CAT3 122 aa4.19□□□□□ -1.74
SMC1A-202ENST00000375340 PLA2G2DQ9UNK4 145 aa4.19□□□□□ -1.74
SMC1A-202ENST00000375340 LAMA5O15230 3695 aa4.19□□□□□ -1.74
SMC1A-202ENST00000375340 ACYP2P14621 99 aa4.18□□□□□ -1.74
SMC1A-202ENST00000375340 OXTP01178 125 aa4.18□□□□□ -1.74
SMC1A-202ENST00000375340 H3BPC8 53 aa4.18□□□□□ -1.74
SMC1A-202ENST00000375340 OCR1Q9BZK8 76 aa4.18□□□□□ -1.74
SMC1A-202ENST00000375340 LINC00313P59037 77 aa4.18□□□□□ -1.74
SMC1A-202ENST00000375340 ZANQ9Y493 2812 aa4.18□□□□□ -1.74
SMC1A-202ENST00000375340 C8orf17Q9NRJ1 99 aa4.17□□□□□ -1.74
SMC1A-202ENST00000375340 APCP25054 2843 aa4.16□□□□□ -1.74
SMC1A-202ENST00000375340 HRNRQ86YZ3 2850 aaPredicted RBP4.16□□□□□ -1.74
SMC1A-202ENST00000375340 MRPL34Q9BQ48 92 aaKnown RBP4.15□□□□□ -1.74
SMC1A-202ENST00000375340 STAB2Q8WWQ8 2551 aa4.15□□□□□ -1.74
SMC1A-202ENST00000375340 KMT2BQ9UMN6 2715 aaPredicted RBP4.15□□□□□ -1.74
SMC1A-202ENST00000375340 LOC400499M0QZD8 3231 aa4.15□□□□□ -1.74
SMC1A-202ENST00000375340 Q96NJ1 140 aa4.15□□□□□ -1.75
SMC1A-202ENST00000375340 DMXL2Q8TDJ6 3036 aa4.15□□□□□ -1.75
SMC1A-202ENST00000375340 IGLV5-48A0A075B6I7 105 aa4.14□□□□□ -1.75
SMC1A-202ENST00000375340 A0A1B0GVX0 72 aa4.14□□□□□ -1.75
SMC1A-202ENST00000375340 NSD1Q96L73 2696 aaPredicted RBP4.14□□□□□ -1.75
SMC1A-202ENST00000375340 SPENQ96T58 3664 aaKnown RBP4.14□□□□□ -1.75
SMC1A-202ENST00000375340 IGLV5-37A0A075B6J1 123 aa4.13□□□□□ -1.75
SMC1A-202ENST00000375340 NF1P21359 2839 aa4.13□□□□□ -1.75
SMC1A-202ENST00000375340 FP248Q71RG6 208 aaPredicted RBP4.13□□□□□ -1.75
SMC1A-202ENST00000375340 DMXL1Q9Y485 3027 aa4.12□□□□□ -1.75
SMC1A-202ENST00000375340 CNBPP62633 177 aaKnown RBP4.12□□□□□ -1.75
SMC1A-202ENST00000375340 LOC101927531A0A1B0GV80 90 aa4.12□□□□□ -1.75
SMC1A-202ENST00000375340 APLNQ9ULZ1 77 aa4.11□□□□□ -1.75
SMC1A-202ENST00000375340 NIPBLQ6KC79 2804 aaeCLIP4.11□□□□□ -1.75
SMC1A-202ENST00000375340 TYMSOSQ8TAI1 123 aa4.11□□□□□ -1.75
SMC1A-202ENST00000375340 ATP11AUNQ6ZP68 121 aa4.11□□□□□ -1.75
SMC1A-202ENST00000375340 SPRR4Q96PI1 79 aa4.11□□□□□ -1.75
SMC1A-202ENST00000375340 PSORS1C2Q9UIG4 136 aa4.1□□□□□ -1.75
SMC1A-202ENST00000375340 ADGRG4Q8IZF6 3080 aa4.1□□□□□ -1.75
SMC1A-202ENST00000375340 C9orf92A6NGG3 77 aa4.1□□□□□ -1.75
SMC1A-202ENST00000375340 A0A087WTM6 91 aa4.1□□□□□ -1.75
SMC1A-202ENST00000375340 Q1T7F1 81 aa4.1□□□□□ -1.75
SMC1A-202ENST00000375340 CFAP47Q6ZTR5 3102 aa4.1□□□□□ -1.75
SMC1A-202ENST00000375340 ATMQ13315 3056 aa4.09□□□□□ -1.75
SMC1A-202ENST00000375340 BSNQ9UPA5 3926 aa4.09□□□□□ -1.75
SMC1A-202ENST00000375340 ZNF861PO60384 105 aa4.09□□□□□ -1.76
SMC1A-202ENST00000375340 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.09□□□□□ -1.76
SMC1A-202ENST00000375340 CYP4F30PQ9H0H9 118 aa4.08□□□□□ -1.76
SMC1A-202ENST00000375340 KRTAP26-1Q6PEX3 210 aa4.08□□□□□ -1.76
SMC1A-202ENST00000375340 C9orf163Q8N9P6 203 aa4.07□□□□□ -1.76
SMC1A-202ENST00000375340 SPANXA2-OT1Q8N9U9 137 aa4.07□□□□□ -1.76
SMC1A-202ENST00000375340 C8orf87E5RJ46 101 aa4.07□□□□□ -1.76
SMC1A-202ENST00000375340 WIPF1O43516 503 aa4.06□□□□□ -1.76
SMC1A-202ENST00000375340 SVEP1Q4LDE5 3571 aa4.06□□□□□ -1.76
SMC1A-202ENST00000375340 PLA2G1BP04054 148 aaKnown RBP4.06□□□□□ -1.76
SMC1A-202ENST00000375340 KTN1-AS1Q86SY8 53 aa4.06□□□□□ -1.76
SMC1A-202ENST00000375340 ZFHX3Q15911 3703 aa4.06□□□□□ -1.76
SMC1A-202ENST00000375340 IGLV7-43P04211 117 aa4.06□□□□□ -1.76
SMC1A-202ENST00000375340 FAM229AH3BQW9 127 aa4.05□□□□□ -1.76
SMC1A-202ENST00000375340 CD164Q04900 197 aa4.05□□□□□ -1.76
SMC1A-202ENST00000375340 MIR22HGQ0VDD5 57 aa4.05□□□□□ -1.76
SMC1A-202ENST00000375340 Q8N1X5 172 aa4.05□□□□□ -1.76
SMC1A-202ENST00000375340 KRTAP1-5Q9BYS1 174 aa4.05□□□□□ -1.76
SMC1A-202ENST00000375340 RELNP78509 3460 aa4.04□□□□□ -1.76
SMC1A-202ENST00000375340 MMP24-AS1A0A0U1RRL7 71 aa4.04□□□□□ -1.76
SMC1A-202ENST00000375340 MXRA5Q9NR99 2828 aa4.03□□□□□ -1.76
SMC1A-202ENST00000375340 SPRR1AP35321 89 aa4.03□□□□□ -1.76
SMC1A-202ENST00000375340 CDC42SE1Q9NRR8 79 aa4.03□□□□□ -1.76
SMC1A-202ENST00000375340 SMR3BP02814 79 aaPredicted RBP4.02□□□□□ -1.77
SMC1A-202ENST00000375340 HIVEP1P15822 2718 aa4.02□□□□□ -1.77
SMC1A-202ENST00000375340 Q5VV11 94 aa4.02□□□□□ -1.77
SMC1A-202ENST00000375340 PRR26Q8N8Z3 221 aa4.01□□□□□ -1.77
SMC1A-202ENST00000375340 LINC00304Q8N9R0 145 aa4.01□□□□□ -1.77
SMC1A-202ENST00000375340 IGLV7-46A0A075B6I9 117 aa4.01□□□□□ -1.77
SMC1A-202ENST00000375340 Q75L30 129 aa4□□□□□ -1.77
SMC1A-202ENST00000375340 UQCR11O14957 56 aa4□□□□□ -1.77
SMC1A-202ENST00000375340 CELSR2Q9HCU4 2923 aa4□□□□□ -1.77
SMC1A-202ENST00000375340 HRES1P13985 223 aa3.99□□□□□ -1.77
SMC1A-202ENST00000375340 FBN2P35556 2912 aa3.99□□□□□ -1.77
SMC1A-202ENST00000375340 SPINT4Q6UDR6 99 aa3.99□□□□□ -1.77
SMC1A-202ENST00000375340 Q8N9P0 234 aaPredicted RBP3.99□□□□□ -1.77
SMC1A-202ENST00000375340 LINC00472Q9H8W2 130 aa3.98□□□□□ -1.77
SMC1A-202ENST00000375340 DCHS2Q6V1P9 2916 aa3.98□□□□□ -1.77
SMC1A-202ENST00000375340 SSBP3-AS1Q7Z2R9 100 aa3.98□□□□□ -1.77
SMC1A-202ENST00000375340 ASH1LQ9NR48 2969 aaKnown RBP3.98□□□□□ -1.77
SMC1A-202ENST00000375340 KRTAP4-16G5E9R7 235 aaPredicted RBP3.98□□□□□ -1.77
SMC1A-202ENST00000375340 TNP2Q05952 138 aa3.98□□□□□ -1.77
SMC1A-202ENST00000375340 SPINK7P58062 85 aa3.97□□□□□ -1.77
SMC1A-202ENST00000375340 PANO1I0J062 215 aa3.97□□□□□ -1.77
SMC1A-202ENST00000375340 VPS13CQ709C8 3753 aa3.97□□□□□ -1.77
SMC1A-202ENST00000375340 RBM12B-AS1Q9P1G2 102 aa3.97□□□□□ -1.77
SMC1A-202ENST00000375340 KRTAP11-1Q8IUC1 163 aa3.96□□□□□ -1.78
SMC1A-202ENST00000375340 PRAC1Q96KF2 57 aa3.96□□□□□ -1.78
SMC1A-202ENST00000375340 WWC2-AS2Q96NR7 200 aa3.96□□□□□ -1.78
SMC1A-202ENST00000375340 KRTAP7-1Q8IUC3 87 aa3.95□□□□□ -1.78
SMC1A-202ENST00000375340 A0A0D9SG42 100 aa3.95□□□□□ -1.78
SMC1A-202ENST00000375340 LCA10Q71F78 164 aa3.95□□□□□ -1.78
SMC1A-202ENST00000375340 Q5W150 140 aa3.94□□□□□ -1.78
SMC1A-202ENST00000375340 LINC01558Q9Y6Z2 57 aa3.93□□□□□ -1.78
SMC1A-202ENST00000375340 MUC3AQ02505 3323 aa3.93□□□□□ -1.78
SMC1A-202ENST00000375340 PLAC8Q9NZF1 115 aa3.92□□□□□ -1.78
SMC1A-202ENST00000375340 COL12A1Q99715 3063 aa3.92□□□□□ -1.78
SMC1A-202ENST00000375340 SPRR1BP22528 89 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms