RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 A0A087WSZ3 146 aa4.28□□□□□ -1.72
VPS39-202ENST00000348544 H0Y9P7 68 aa4.28□□□□□ -1.72
VPS39-202ENST00000348544 UBE2AP49459 152 aa4.28□□□□□ -1.72
VPS39-202ENST00000348544 CASC10Q5T4H9 136 aa4.28□□□□□ -1.72
VPS39-202ENST00000348544 LCA10Q71F78 164 aa4.28□□□□□ -1.72
VPS39-202ENST00000348544 TRRAPQ9Y4A5 3859 aa4.28□□□□□ -1.72
VPS39-202ENST00000348544 H3BNG1 76 aa4.28□□□□□ -1.72
VPS39-202ENST00000348544 LINC01556Q5JQF7 62 aa4.28□□□□□ -1.72
VPS39-202ENST00000348544 MRPL55Q7Z7F7 128 aaKnown RBP4.28□□□□□ -1.73
VPS39-202ENST00000348544 C9orf163Q8N9P6 203 aa4.28□□□□□ -1.73
VPS39-202ENST00000348544 LIMD2Q9BT23 127 aa4.28□□□□□ -1.73
VPS39-202ENST00000348544 OTOGQ6ZRI0 2925 aa4.27□□□□□ -1.73
VPS39-202ENST00000348544 TEP1Q99973 2627 aaKnown RBP4.27□□□□□ -1.73
VPS39-202ENST00000348544 BAHCC1Q9P281 2608 aa4.27□□□□□ -1.73
VPS39-202ENST00000348544 CNBPP62633 177 aaKnown RBP4.27□□□□□ -1.73
VPS39-202ENST00000348544 KTN1-AS1Q86SY8 53 aa4.27□□□□□ -1.73
VPS39-202ENST00000348544 SMR3AQ99954 134 aa4.27□□□□□ -1.73
VPS39-202ENST00000348544 TENM3Q9P273 2699 aa4.26□□□□□ -1.73
VPS39-202ENST00000348544 ITPR2Q14571 2701 aa4.26□□□□□ -1.73
VPS39-202ENST00000348544 SPTSSBQ8NFR3 76 aa4.26□□□□□ -1.73
VPS39-202ENST00000348544 REG3GQ6UW15 175 aa4.26□□□□□ -1.73
VPS39-202ENST00000348544 CASC2Q6XLA1 102 aa4.26□□□□□ -1.73
VPS39-202ENST00000348544 Q75L30 129 aa4.26□□□□□ -1.73
VPS39-202ENST00000348544 IGLV8-61A0A075B6I0 122 aa4.25□□□□□ -1.73
VPS39-202ENST00000348544 RBM12B-AS1Q9P1G2 102 aa4.25□□□□□ -1.73
VPS39-202ENST00000348544 NOTCH2Q04721 2471 aa4.25□□□□□ -1.73
VPS39-202ENST00000348544 LOC101927531A0A1B0GV80 90 aa4.25□□□□□ -1.73
VPS39-202ENST00000348544 H3BPC8 53 aa4.25□□□□□ -1.73
VPS39-202ENST00000348544 PRLHP81277 87 aa4.25□□□□□ -1.73
VPS39-202ENST00000348544 COA5Q86WW8 74 aa4.25□□□□□ -1.73
VPS39-202ENST00000348544 A6NN06 94 aa4.24□□□□□ -1.73
VPS39-202ENST00000348544 TENM4Q6N022 2769 aa4.24□□□□□ -1.73
VPS39-202ENST00000348544 DNAH1Q9P2D7 4330 aa4.24□□□□□ -1.73
VPS39-202ENST00000348544 DNAH10OSP0CZ25 163 aa4.23□□□□□ -1.73
VPS39-202ENST00000348544 ATP11AUNQ6ZP68 121 aa4.23□□□□□ -1.73
VPS39-202ENST00000348544 A6NED7 52 aa4.23□□□□□ -1.73
VPS39-202ENST00000348544 ATRQ13535 2644 aa4.23□□□□□ -1.73
VPS39-202ENST00000348544 SRRM2Q9UQ35 2752 aaKnown RBP4.23□□□□□ -1.73
VPS39-202ENST00000348544 A8MWP4 228 aa4.22□□□□□ -1.73
VPS39-202ENST00000348544 LINC00472Q9H8W2 130 aa4.22□□□□□ -1.73
VPS39-202ENST00000348544 KMT2BQ9UMN6 2715 aaPredicted RBP4.22□□□□□ -1.73
VPS39-202ENST00000348544 IGLV7-46A0A075B6I9 117 aa4.21□□□□□ -1.73
VPS39-202ENST00000348544 DEFB131BA0A096LNP1 70 aa4.21□□□□□ -1.74
VPS39-202ENST00000348544 MMP24-AS1A0A0U1RRL7 71 aa4.2□□□□□ -1.74
VPS39-202ENST00000348544 PHF5AQ7RTV0 110 aaKnown RBP4.2□□□□□ -1.74
VPS39-202ENST00000348544 CDC42SE1Q9NRR8 79 aa4.2□□□□□ -1.74
VPS39-202ENST00000348544 PLAC8Q9NZF1 115 aa4.2□□□□□ -1.74
VPS39-202ENST00000348544 ANK2Q01484 3957 aa4.2□□□□□ -1.74
VPS39-202ENST00000348544 PCOTHQ58A44 107 aa4.19□□□□□ -1.74
VPS39-202ENST00000348544 KRTAP11-1Q8IUC1 163 aa4.19□□□□□ -1.74
VPS39-202ENST00000348544 A0A096LNI7 61 aa4.19□□□□□ -1.74
VPS39-202ENST00000348544 MOBPQ13875 183 aa4.19□□□□□ -1.74
VPS39-202ENST00000348544 NDUFS5O43920 106 aa4.18□□□□□ -1.74
VPS39-202ENST00000348544 SPAG11AQ6PDA7 123 aa4.18□□□□□ -1.74
VPS39-202ENST00000348544 LINC01558Q9Y6Z2 57 aa4.18□□□□□ -1.74
VPS39-202ENST00000348544 MAST4O15021 2626 aa4.18□□□□□ -1.74
VPS39-202ENST00000348544 HELZ2Q9BYK8 2649 aaKnown RBP4.18□□□□□ -1.74
VPS39-202ENST00000348544 TENM2Q9NT68 2774 aa4.18□□□□□ -1.74
VPS39-202ENST00000348544 IGKV2-24A0A0C4DH68 120 aa4.18□□□□□ -1.74
VPS39-202ENST00000348544 SPINK7P58062 85 aa4.18□□□□□ -1.74
VPS39-202ENST00000348544 KRTAP10-11P60412 298 aa4.18□□□□□ -1.74
VPS39-202ENST00000348544 H0Y9J4 135 aa4.17□□□□□ -1.74
VPS39-202ENST00000348544 NSD1Q96L73 2696 aaPredicted RBP4.17□□□□□ -1.74
VPS39-202ENST00000348544 SPRR1BP22528 89 aa4.17□□□□□ -1.74
VPS39-202ENST00000348544 C11orf45Q8TAV5 145 aa4.17□□□□□ -1.74
VPS39-202ENST00000348544 CSMD3Q7Z407 3707 aa4.16□□□□□ -1.74
VPS39-202ENST00000348544 ASB16-AS1Q495Z4 193 aa4.16□□□□□ -1.74
VPS39-202ENST00000348544 C7orf65Q6ZTY9 151 aa4.16□□□□□ -1.74
VPS39-202ENST00000348544 HECTD1Q9ULT8 2610 aa4.16□□□□□ -1.74
VPS39-202ENST00000348544 DNAH10Q8IVF4 4471 aa4.16□□□□□ -1.74
VPS39-202ENST00000348544 HRES1P13985 223 aa4.15□□□□□ -1.74
VPS39-202ENST00000348544 Q96NJ1 140 aa4.15□□□□□ -1.74
VPS39-202ENST00000348544 INAFM1C9JVW0 142 aa4.15□□□□□ -1.75
VPS39-202ENST00000348544 Q6ZR54 194 aa4.14□□□□□ -1.75
VPS39-202ENST00000348544 CHTF8P0CG12 524 aa4.13□□□□□ -1.75
VPS39-202ENST00000348544 LYSTQ99698 3801 aa4.12□□□□□ -1.75
VPS39-202ENST00000348544 FBN1P35555 2871 aaKnown RBP4.12□□□□□ -1.75
VPS39-202ENST00000348544 TP53AIP1Q9HCN2 124 aa4.12□□□□□ -1.75
VPS39-202ENST00000348544 C8orf17Q9NRJ1 99 aa4.12□□□□□ -1.75
VPS39-202ENST00000348544 KRTAP1-5Q9BYS1 174 aa4.11□□□□□ -1.75
VPS39-202ENST00000348544 CMYA5Q8N3K9 4069 aa4.1□□□□□ -1.75
VPS39-202ENST00000348544 PRR26Q8N8Z3 221 aa4.09□□□□□ -1.75
VPS39-202ENST00000348544 A0A087X002 238 aa4.09□□□□□ -1.75
VPS39-202ENST00000348544 K7EIL1 84 aa4.09□□□□□ -1.75
VPS39-202ENST00000348544 NOTCH2NLQ7Z3S9 236 aa4.09□□□□□ -1.75
VPS39-202ENST00000348544 IGHV6-1A0A0B4J1U7 121 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 KRTAP13-1Q8IUC0 172 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 PRAC1Q96KF2 57 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 DNAH3Q8TD57 4116 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 H3BS24 57 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 LINC00313P59037 77 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 DNAH9Q9NYC9 4486 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 IGLV9-49A0A0B4J1Y8 123 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 A0A1B0GVX0 72 aa4.08□□□□□ -1.76
VPS39-202ENST00000348544 COL7A1Q02388 2944 aa4.07□□□□□ -1.76
VPS39-202ENST00000348544 C8orf87E5RJ46 101 aa4.07□□□□□ -1.76
VPS39-202ENST00000348544 NOTCH1P46531 2555 aa4.07□□□□□ -1.76
VPS39-202ENST00000348544 PANO1I0J062 215 aa4.07□□□□□ -1.76
VPS39-202ENST00000348544 J3QKU1 62 aa4.07□□□□□ -1.76
VPS39-202ENST00000348544 ADM2Q7Z4H4 148 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms