RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 COL6A3P12111 3177 aa2.17□□□□□ -2.06
CSMD3-202ENST00000339701 Q8NAQ8 132 aa2.17□□□□□ -2.06
CSMD3-202ENST00000339701 WDFY4Q6ZS81 3184 aa2.17□□□□□ -2.06
CSMD3-202ENST00000339701 PRR9Q5T870 116 aa2.17□□□□□ -2.06
CSMD3-202ENST00000339701 NBPF19A0A087WUL8 3843 aa2.17□□□□□ -2.06
CSMD3-202ENST00000339701 DNAH14Q0VDD8 3507 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 ST20-AS1Q8NBB2 130 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 A0A096LNT2 108 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 PRLHP81277 87 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 APLNQ9ULZ1 77 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 DEFB1P60022 68 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 LINC01558Q9Y6Z2 57 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 FRYLO94915 3013 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 UNC80Q8N2C7 3258 aa2.16□□□□□ -2.06
CSMD3-202ENST00000339701 IGLV8-61A0A075B6I0 122 aa2.15□□□□□ -2.06
CSMD3-202ENST00000339701 TSPEAR-AS2P59090 65 aa2.15□□□□□ -2.06
CSMD3-202ENST00000339701 PCOTHQ58A44 107 aa2.15□□□□□ -2.06
CSMD3-202ENST00000339701 OCR1Q9BZK8 76 aa2.15□□□□□ -2.06
CSMD3-202ENST00000339701 Q5XG85 94 aa2.15□□□□□ -2.07
CSMD3-202ENST00000339701 REV3LO60673 3130 aa2.15□□□□□ -2.07
CSMD3-202ENST00000339701 SPRR1BP22528 89 aa2.15□□□□□ -2.07
CSMD3-202ENST00000339701 C4orf26Q17RF5 130 aa2.15□□□□□ -2.07
CSMD3-202ENST00000339701 KRTAP1-3Q8IUG1 177 aa2.15□□□□□ -2.07
CSMD3-202ENST00000339701 LITAFQ99732 161 aa2.14□□□□□ -2.07
CSMD3-202ENST00000339701 SMCPP49901 116 aaPredicted RBP2.14□□□□□ -2.07
CSMD3-202ENST00000339701 SZT2Q5T011 3432 aa2.14□□□□□ -2.07
CSMD3-202ENST00000339701 CSAG1Q6PB30 78 aa2.14□□□□□ -2.07
CSMD3-202ENST00000339701 NIPBLQ6KC79 2804 aaeCLIP2.14□□□□□ -2.07
CSMD3-202ENST00000339701 SPTBN5Q9NRC6 3674 aaKnown RBP2.14□□□□□ -2.07
CSMD3-202ENST00000339701 FP248Q71RG6 208 aaPredicted RBP2.14□□□□□ -2.07
CSMD3-202ENST00000339701 A0A1B0GU33 70 aa2.13□□□□□ -2.07
CSMD3-202ENST00000339701 TNRC18O15417 2968 aaPredicted RBP2.13□□□□□ -2.07
CSMD3-202ENST00000339701 PLAC4Q8WY50 150 aa2.13□□□□□ -2.07
CSMD3-202ENST00000339701 FRYQ5TBA9 3013 aa2.13□□□□□ -2.07
CSMD3-202ENST00000339701 C9orf92A6NGG3 77 aa2.13□□□□□ -2.07
CSMD3-202ENST00000339701 PP632Q6XCG6 107 aa2.13□□□□□ -2.07
CSMD3-202ENST00000339701 CDH23Q9H251 3354 aa2.12□□□□□ -2.07
CSMD3-202ENST00000339701 KRTAP1-1Q07627 177 aa2.12□□□□□ -2.07
CSMD3-202ENST00000339701 FAM218AQ96MZ4 157 aa2.11□□□□□ -2.07
CSMD3-202ENST00000339701 M0QZ58 72 aa2.11□□□□□ -2.07
CSMD3-202ENST00000339701 TENM3Q9P273 2699 aa2.11□□□□□ -2.07
CSMD3-202ENST00000339701 IGFL1Q6UW32 110 aa2.11□□□□□ -2.07
CSMD3-202ENST00000339701 ANAPC11Q9NYG5 84 aa2.11□□□□□ -2.07
CSMD3-202ENST00000339701 RPL37P61927 97 aaKnown RBP2.1□□□□□ -2.07
CSMD3-202ENST00000339701 CELSR3Q9NYQ7 3312 aa2.1□□□□□ -2.07
CSMD3-202ENST00000339701 Q8N377 158 aa2.1□□□□□ -2.07
CSMD3-202ENST00000339701 MGAQ8IWI9 3026 aa2.1□□□□□ -2.07
CSMD3-202ENST00000339701 Q8N9P0 234 aaPredicted RBP2.1□□□□□ -2.07
CSMD3-202ENST00000339701 SPRR1AP35321 89 aa2.1□□□□□ -2.07
CSMD3-202ENST00000339701 C9orf129Q5T035 196 aaKnown RBP2.1□□□□□ -2.07
CSMD3-202ENST00000339701 VPS13AQ96RL7 3174 aa2.1□□□□□ -2.07
CSMD3-202ENST00000339701 DEFB116Q30KQ4 102 aa2.1□□□□□ -2.07
CSMD3-202ENST00000339701 DSPP15924 2871 aaKnown RBP2.1□□□□□ -2.07
CSMD3-202ENST00000339701 TRIOO75962 3097 aa2.09□□□□□ -2.07
CSMD3-202ENST00000339701 CHD9Q3L8U1 2897 aa2.09□□□□□ -2.07
CSMD3-202ENST00000339701 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.09□□□□□ -2.07
CSMD3-202ENST00000339701 Q8N1X5 172 aa2.08□□□□□ -2.08
CSMD3-202ENST00000339701 SPEGQ15772 3267 aa2.08□□□□□ -2.08
CSMD3-202ENST00000339701 PRR3P79522 188 aaKnown RBP2.08□□□□□ -2.08
CSMD3-202ENST00000339701 Q6ZR54 194 aa2.08□□□□□ -2.08
CSMD3-202ENST00000339701 WDFY3Q8IZQ1 3526 aa2.08□□□□□ -2.08
CSMD3-202ENST00000339701 KRTAP16-1A8MUX0 517 aa2.08□□□□□ -2.08
CSMD3-202ENST00000339701 KRTAP10-3P60369 221 aa2.08□□□□□ -2.08
CSMD3-202ENST00000339701 KALRNO60229 2985 aa2.07□□□□□ -2.08
CSMD3-202ENST00000339701 ROMO1P60602 79 aa2.07□□□□□ -2.08
CSMD3-202ENST00000339701 MYO15AQ9UKN7 3530 aa2.07□□□□□ -2.08
CSMD3-202ENST00000339701 ZFHX3Q15911 3703 aa2.06□□□□□ -2.08
CSMD3-202ENST00000339701 HIVEP1P15822 2718 aa2.06□□□□□ -2.08
CSMD3-202ENST00000339701 DMDP11532 3685 aa2.06□□□□□ -2.08
CSMD3-202ENST00000339701 R4GN34 69 aa2.06□□□□□ -2.08
CSMD3-202ENST00000339701 FREM2Q5SZK8 3169 aa2.06□□□□□ -2.08
CSMD3-202ENST00000339701 GAS8-AS1O95177 125 aa2.05□□□□□ -2.08
CSMD3-202ENST00000339701 ZCCHC13Q8WW36 166 aaKnown RBP2.05□□□□□ -2.08
CSMD3-202ENST00000339701 SPATA8Q6RVD6 105 aa2.05□□□□□ -2.08
CSMD3-202ENST00000339701 PRR26Q8N8Z3 221 aa2.05□□□□□ -2.08
CSMD3-202ENST00000339701 NBEAQ8NFP9 2946 aa2.05□□□□□ -2.08
CSMD3-202ENST00000339701 APCP25054 2843 aa2.05□□□□□ -2.08
CSMD3-202ENST00000339701 LAMA1P25391 3075 aa2.05□□□□□ -2.08
CSMD3-202ENST00000339701 LINC00472Q9H8W2 130 aa2.04□□□□□ -2.08
CSMD3-202ENST00000339701 PLAC8Q9NZF1 115 aa2.04□□□□□ -2.08
CSMD3-202ENST00000339701 SPENQ96T58 3664 aaKnown RBP2.04□□□□□ -2.08
CSMD3-202ENST00000339701 ITPR1Q14643 2758 aa2.04□□□□□ -2.08
CSMD3-202ENST00000339701 TENM1Q9UKZ4 2725 aa2.04□□□□□ -2.08
CSMD3-202ENST00000339701 A0A1W2PNM2 257 aa2.03□□□□□ -2.08
CSMD3-202ENST00000339701 DSCR10P59022 87 aa2.03□□□□□ -2.08
CSMD3-202ENST00000339701 CHD7Q9P2D1 2997 aa2.03□□□□□ -2.08
CSMD3-202ENST00000339701 Q5VV11 94 aa2.03□□□□□ -2.08
CSMD3-202ENST00000339701 HTTP42858 3142 aa2.02□□□□□ -2.09
CSMD3-202ENST00000339701 ASPMQ8IZT6 3477 aa2.02□□□□□ -2.09
CSMD3-202ENST00000339701 EYSQ5T1H1 3165 aa2.02□□□□□ -2.09
CSMD3-202ENST00000339701 ASH1LQ9NR48 2969 aaKnown RBP2.01□□□□□ -2.09
CSMD3-202ENST00000339701 ADM2Q7Z4H4 148 aa2.01□□□□□ -2.09
CSMD3-202ENST00000339701 TENM4Q6N022 2769 aa2.01□□□□□ -2.09
CSMD3-202ENST00000339701 NDUFAF8A1L188 74 aa2.01□□□□□ -2.09
CSMD3-202ENST00000339701 SPINK7P58062 85 aa2.01□□□□□ -2.09
CSMD3-202ENST00000339701 MMP24-AS1A0A0U1RRL7 71 aa2□□□□□ -2.09
CSMD3-202ENST00000339701 PANO1I0J062 215 aa2□□□□□ -2.09
CSMD3-202ENST00000339701 ZFHX4Q86UP3 3567 aa2□□□□□ -2.09
CSMD3-202ENST00000339701 TNP1P09430 55 aa2□□□□□ -2.09
CSMD3-202ENST00000339701 H3BS24 57 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms