RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 H3BS24 57 aa3.65□□□□□ -1.83
CSDE1-202ENST00000339438 ST20-AS1Q8NBB2 130 aa3.65□□□□□ -1.83
CSDE1-202ENST00000339438 MUC17Q685J3 4493 aa3.64□□□□□ -1.83
CSDE1-202ENST00000339438 LINC00269Q8N2A0 174 aa3.64□□□□□ -1.83
CSDE1-202ENST00000339438 DSCR10P59022 87 aa3.63□□□□□ -1.83
CSDE1-202ENST00000339438 UBE2BP63146 152 aa3.63□□□□□ -1.83
CSDE1-202ENST00000339438 MRPL55Q7Z7F7 128 aaKnown RBP3.63□□□□□ -1.83
CSDE1-202ENST00000339438 STAB2Q8WWQ8 2551 aa3.63□□□□□ -1.83
CSDE1-202ENST00000339438 A0A0J9YWU9 116 aa3.63□□□□□ -1.83
CSDE1-202ENST00000339438 LINC00528Q8N1L1 170 aa3.63□□□□□ -1.83
CSDE1-202ENST00000339438 IGLV5-48A0A075B6I7 105 aa3.62□□□□□ -1.83
CSDE1-202ENST00000339438 ATP11AUNQ6ZP68 121 aa3.62□□□□□ -1.83
CSDE1-202ENST00000339438 LOC101927531A0A1B0GV80 90 aa3.62□□□□□ -1.83
CSDE1-202ENST00000339438 Q75L30 129 aa3.62□□□□□ -1.83
CSDE1-202ENST00000339438 PLAC8Q9NZF1 115 aa3.62□□□□□ -1.83
CSDE1-202ENST00000339438 ZNF73O43830 326 aaPredicted RBP3.61□□□□□ -1.83
CSDE1-202ENST00000339438 LYRM9A8MSI8 78 aa3.61□□□□□ -1.83
CSDE1-202ENST00000339438 APOC4P55056 127 aa3.61□□□□□ -1.83
CSDE1-202ENST00000339438 UNQ6190/PRO20217Q6UXQ8 127 aa3.61□□□□□ -1.83
CSDE1-202ENST00000339438 DIRC1Q969H9 104 aa3.61□□□□□ -1.83
CSDE1-202ENST00000339438 HCG22E2RYF7 251 aa3.61□□□□□ -1.83
CSDE1-202ENST00000339438 C8orf87E5RJ46 101 aa3.61□□□□□ -1.83
CSDE1-202ENST00000339438 TNP2Q05952 138 aa3.61□□□□□ -1.83
CSDE1-202ENST00000339438 A0A1W2PNM2 257 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 C3orf84H3BNL1 204 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 CMC4P56277 68 aaPredicted RBP3.6□□□□□ -1.83
CSDE1-202ENST00000339438 CLPSL2Q6UWE3 100 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 ETDCA0A1B0GVM5 59 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 UBE2AP49459 152 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 PRR4Q16378 134 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 HMCN2Q8NDA2 5059 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 Q9BRP9 147 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 KCNQ1DNQ9H478 68 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 GVQW2A0A096LPI5 108 aaPredicted RBP3.6□□□□□ -1.83
CSDE1-202ENST00000339438 NDUFS5O43920 106 aa3.6□□□□□ -1.83
CSDE1-202ENST00000339438 K7EQZ3 153 aa3.59□□□□□ -1.83
CSDE1-202ENST00000339438 VPREB1P12018 145 aa3.59□□□□□ -1.83
CSDE1-202ENST00000339438 Q8N377 158 aa3.59□□□□□ -1.83
CSDE1-202ENST00000339438 LRP1Q07954 4544 aaKnown RBP3.59□□□□□ -1.83
CSDE1-202ENST00000339438 CHCHD10Q8WYQ3 142 aaPredicted RBP3.59□□□□□ -1.83
CSDE1-202ENST00000339438 C16orf74Q96GX8 76 aa3.59□□□□□ -1.83
CSDE1-202ENST00000339438 A0A1B0GVY2 172 aa3.59□□□□□ -1.84
CSDE1-202ENST00000339438 MOBPQ13875 183 aa3.59□□□□□ -1.84
CSDE1-202ENST00000339438 HIGD2BQ4VC39 106 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 SPRR4Q96PI1 79 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 LIMD2Q9BT23 127 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 X6R8D5 127 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 CHKB-CPT1BH3BT56 60 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 C9orf163Q8N9P6 203 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 SPANXA2-OT1Q8N9U9 137 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 C6orf48Q9UBA6 75 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 GYPEP15421 78 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 C7orf65Q6ZTY9 151 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 B9D2Q9BPU9 175 aa3.58□□□□□ -1.84
CSDE1-202ENST00000339438 A0A1B0GW54 56 aa3.57□□□□□ -1.84
CSDE1-202ENST00000339438 CDC42SE1Q9NRR8 79 aa3.57□□□□□ -1.84
CSDE1-202ENST00000339438 HERC1Q15751 4861 aa3.57□□□□□ -1.84
CSDE1-202ENST00000339438 IGLV10-54A0A075B6I4 117 aa3.56□□□□□ -1.84
CSDE1-202ENST00000339438 KRTAP29-1A8MX34 341 aaPredicted RBP3.56□□□□□ -1.84
CSDE1-202ENST00000339438 XAGE1AQ9HD64 81 aa3.56□□□□□ -1.84
CSDE1-202ENST00000339438 SPART-AS1P0CW21 52 aa3.55□□□□□ -1.84
CSDE1-202ENST00000339438 REG3AQ06141 175 aa3.55□□□□□ -1.84
CSDE1-202ENST00000339438 PRR15LQ9BU68 103 aa3.55□□□□□ -1.84
CSDE1-202ENST00000339438 NDUFB1O75438 58 aa3.55□□□□□ -1.84
CSDE1-202ENST00000339438 LINC00208Q96KT6 92 aa3.55□□□□□ -1.84
CSDE1-202ENST00000339438 KRTAP4-16G5E9R7 235 aaPredicted RBP3.55□□□□□ -1.84
CSDE1-202ENST00000339438 SPTSSBQ8NFR3 76 aa3.55□□□□□ -1.84
CSDE1-202ENST00000339438 SPAG11BQ08648 103 aa3.54□□□□□ -1.84
CSDE1-202ENST00000339438 Q8NAQ8 132 aa3.54□□□□□ -1.84
CSDE1-202ENST00000339438 PRR34Q9NV39 138 aa3.54□□□□□ -1.84
CSDE1-202ENST00000339438 IGKV2D-24A0A075B6R9 120 aa3.54□□□□□ -1.84
CSDE1-202ENST00000339438 Q8NBF4 154 aa3.54□□□□□ -1.84
CSDE1-202ENST00000339438 CNBPP62633 177 aaKnown RBP3.53□□□□□ -1.84
CSDE1-202ENST00000339438 PRO0255Q9UI72 69 aa3.53□□□□□ -1.84
CSDE1-202ENST00000339438 KRTAP26-1Q6PEX3 210 aa3.53□□□□□ -1.85
CSDE1-202ENST00000339438 LINC01558Q9Y6Z2 57 aa3.52□□□□□ -1.85
CSDE1-202ENST00000339438 DEFB131BA0A096LNP1 70 aa3.52□□□□□ -1.85
CSDE1-202ENST00000339438 SPINK7P58062 85 aa3.52□□□□□ -1.85
CSDE1-202ENST00000339438 C7orf33Q8WU49 177 aa3.52□□□□□ -1.85
CSDE1-202ENST00000339438 ANGP03950 147 aaKnown RBP3.51□□□□□ -1.85
CSDE1-202ENST00000339438 A6NED7 52 aa3.51□□□□□ -1.85
CSDE1-202ENST00000339438 DEFB116Q30KQ4 102 aa3.51□□□□□ -1.85
CSDE1-202ENST00000339438 COA5Q86WW8 74 aa3.51□□□□□ -1.85
CSDE1-202ENST00000339438 LINC00313P59037 77 aa3.51□□□□□ -1.85
CSDE1-202ENST00000339438 KRTAP10-4P60372 401 aaPredicted RBP3.51□□□□□ -1.85
CSDE1-202ENST00000339438 C1orf137Q5JT78 98 aa3.51□□□□□ -1.85
CSDE1-202ENST00000339438 IGLV7-46A0A075B6I9 117 aa3.5□□□□□ -1.85
CSDE1-202ENST00000339438 WWC2-AS2Q96NR7 200 aa3.5□□□□□ -1.85
CSDE1-202ENST00000339438 ADM2Q7Z4H4 148 aa3.5□□□□□ -1.85
CSDE1-202ENST00000339438 PRR26Q8N8Z3 221 aa3.5□□□□□ -1.85
CSDE1-202ENST00000339438 IGLV5-37A0A075B6J1 123 aa3.5□□□□□ -1.85
CSDE1-202ENST00000339438 SPRR1AP35321 89 aa3.49□□□□□ -1.85
CSDE1-202ENST00000339438 H3BPC8 53 aa3.49□□□□□ -1.85
CSDE1-202ENST00000339438 KRTAP7-1Q8IUC3 87 aa3.49□□□□□ -1.85
CSDE1-202ENST00000339438 DEFB105AQ8NG35 78 aa3.49□□□□□ -1.85
CSDE1-202ENST00000339438 PRAC1Q96KF2 57 aa3.49□□□□□ -1.85
CSDE1-202ENST00000339438 IGLV1-50A0A075B6I6 118 aa3.48□□□□□ -1.85
CSDE1-202ENST00000339438 WFDC10BQ8IUB3 73 aa3.48□□□□□ -1.85
CSDE1-202ENST00000339438 PLA2G1BP04054 148 aaKnown RBP3.48□□□□□ -1.85
CSDE1-202ENST00000339438 SERTAD4-AS1Q5TG53 156 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms