RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 LINC00336Q6ZUF6 198 aa8.18□□□□□ -1.1
HMGCS1-201ENST00000325110 CSMD3Q7Z407 3707 aa8.17□□□□□ -1.1
HMGCS1-201ENST00000325110 FP248Q71RG6 208 aaPredicted RBP8.17□□□□□ -1.1
HMGCS1-201ENST00000325110 FAM229BQ4G0N7 80 aa8.16□□□□□ -1.1
HMGCS1-201ENST00000325110 PKIGQ9Y2B9 76 aa8.16□□□□□ -1.1
HMGCS1-201ENST00000325110 LINC00208Q96KT6 92 aa8.16□□□□□ -1.1
HMGCS1-201ENST00000325110 MP68P56378 58 aa8.16□□□□□ -1.1
HMGCS1-201ENST00000325110 IGLV5-37A0A075B6J1 123 aa8.15□□□□□ -1.1
HMGCS1-201ENST00000325110 C16orf90A8MZG2 172 aa8.15□□□□□ -1.1
HMGCS1-201ENST00000325110 IGLV9-49A0A0B4J1Y8 123 aa8.15□□□□□ -1.11
HMGCS1-201ENST00000325110 TNP2Q05952 138 aa8.15□□□□□ -1.11
HMGCS1-201ENST00000325110 SPRR4Q96PI1 79 aa8.12□□□□□ -1.11
HMGCS1-201ENST00000325110 B9D2Q9BPU9 175 aa8.12□□□□□ -1.11
HMGCS1-201ENST00000325110 ANK2Q01484 3957 aa8.11□□□□□ -1.11
HMGCS1-201ENST00000325110 A0A1B0GW54 56 aa8.09□□□□□ -1.11
HMGCS1-201ENST00000325110 CASC2Q6XLA1 102 aa8.09□□□□□ -1.11
HMGCS1-201ENST00000325110 C14orf177Q52M58 125 aa8.09□□□□□ -1.11
HMGCS1-201ENST00000325110 PSPHP1O15172 72 aa8.08□□□□□ -1.12
HMGCS1-201ENST00000325110 NDUFS5O43920 106 aa8.08□□□□□ -1.12
HMGCS1-201ENST00000325110 COL7A1Q02388 2944 aa8.08□□□□□ -1.12
HMGCS1-201ENST00000325110 KRTAP11-1Q8IUC1 163 aa8.08□□□□□ -1.12
HMGCS1-201ENST00000325110 C1orf64Q8NEQ6 169 aa8.06□□□□□ -1.12
HMGCS1-201ENST00000325110 H0Y9P7 68 aa8.06□□□□□ -1.12
HMGCS1-201ENST00000325110 NDUFB1O75438 58 aa8.04□□□□□ -1.12
HMGCS1-201ENST00000325110 PRO0628Q9UI54 55 aa8.04□□□□□ -1.12
HMGCS1-201ENST00000325110 MDFIQ99750 246 aa8.03□□□□□ -1.12
HMGCS1-201ENST00000325110 CNBPP62633 177 aaKnown RBP8.03□□□□□ -1.12
HMGCS1-201ENST00000325110 CDK2AP2O75956 126 aa8.02□□□□□ -1.13
HMGCS1-201ENST00000325110 PCOTHQ58A44 107 aa8.02□□□□□ -1.13
HMGCS1-201ENST00000325110 PANO1I0J062 215 aa8.01□□□□□ -1.13
HMGCS1-201ENST00000325110 ANAPC11Q9NYG5 84 aa8□□□□□ -1.13
HMGCS1-201ENST00000325110 SPINK6Q6UWN8 80 aa8□□□□□ -1.13
HMGCS1-201ENST00000325110 APLNQ9ULZ1 77 aa8□□□□□ -1.13
HMGCS1-201ENST00000325110 C9orf163Q8N9P6 203 aa8□□□□□ -1.13
HMGCS1-201ENST00000325110 NBDYA0A0U1RRE5 68 aa7.99□□□□□ -1.13
HMGCS1-201ENST00000325110 hDV103S1A0JD37 113 aa7.99□□□□□ -1.13
HMGCS1-201ENST00000325110 PRR15Q8IV56 129 aa7.99□□□□□ -1.13
HMGCS1-201ENST00000325110 IGHV6-1A0A0B4J1U7 121 aa7.98□□□□□ -1.13
HMGCS1-201ENST00000325110 A8MWP4 228 aa7.96□□□□□ -1.13
HMGCS1-201ENST00000325110 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.96□□□□□ -1.14
HMGCS1-201ENST00000325110 MOBPQ13875 183 aa7.95□□□□□ -1.14
HMGCS1-201ENST00000325110 DNAH10Q8IVF4 4471 aa7.95□□□□□ -1.14
HMGCS1-201ENST00000325110 TRAV22A0A0B4J277 110 aa7.95□□□□□ -1.14
HMGCS1-201ENST00000325110 TGP01266 2768 aa7.93□□□□□ -1.14
HMGCS1-201ENST00000325110 A8MUN3 132 aa7.92□□□□□ -1.14
HMGCS1-201ENST00000325110 ZCCHC13Q8WW36 166 aaKnown RBP7.92□□□□□ -1.14
HMGCS1-201ENST00000325110 IGLV8-61A0A075B6I0 122 aa7.91□□□□□ -1.14
HMGCS1-201ENST00000325110 NUPR2A6NF83 97 aa7.9□□□□□ -1.14
HMGCS1-201ENST00000325110 LINC00472Q9H8W2 130 aa7.9□□□□□ -1.15
HMGCS1-201ENST00000325110 HUWE1Q7Z6Z7 4374 aaKnown RBP7.89□□□□□ -1.15
HMGCS1-201ENST00000325110 LCE6AA0A183 80 aa7.89□□□□□ -1.15
HMGCS1-201ENST00000325110 C1orf195Q5TG92 126 aa7.89□□□□□ -1.15
HMGCS1-201ENST00000325110 CIRBP-AS1Q8TBR5 109 aa7.88□□□□□ -1.15
HMGCS1-201ENST00000325110 LYSTQ99698 3801 aa7.88□□□□□ -1.15
HMGCS1-201ENST00000325110 PRR15LQ9BU68 103 aa7.87□□□□□ -1.15
HMGCS1-201ENST00000325110 CHKB-CPT1BH3BT56 60 aa7.87□□□□□ -1.15
HMGCS1-201ENST00000325110 KRTAP29-1A8MX34 341 aaPredicted RBP7.87□□□□□ -1.15
HMGCS1-201ENST00000325110 RTL8CO15255 209 aa7.87□□□□□ -1.15
HMGCS1-201ENST00000325110 PSORS1C2Q9UIG4 136 aa7.86□□□□□ -1.15
HMGCS1-201ENST00000325110 MMP24-AS1A0A0U1RRL7 71 aa7.85□□□□□ -1.15
HMGCS1-201ENST00000325110 SPRR1BP22528 89 aa7.85□□□□□ -1.15
HMGCS1-201ENST00000325110 A0A087WTM6 91 aa7.85□□□□□ -1.15
HMGCS1-201ENST00000325110 SPTSSBQ8NFR3 76 aa7.85□□□□□ -1.15
HMGCS1-201ENST00000325110 IGLV5-52A0A0A0MRZ9 124 aa7.84□□□□□ -1.15
HMGCS1-201ENST00000325110 LY6G6CO95867 125 aa7.83□□□□□ -1.16
HMGCS1-201ENST00000325110 CYP4F30PQ9H0H9 118 aa7.83□□□□□ -1.16
HMGCS1-201ENST00000325110 ZNF706Q9Y5V0 76 aaPredicted RBP7.83□□□□□ -1.16
HMGCS1-201ENST00000325110 RETNLBQ9BQ08 111 aa7.82□□□□□ -1.16
HMGCS1-201ENST00000325110 C8orf17Q9NRJ1 99 aa7.82□□□□□ -1.16
HMGCS1-201ENST00000325110 SPACA4Q8TDM5 124 aa7.82□□□□□ -1.16
HMGCS1-201ENST00000325110 Q1T7F1 81 aa7.8□□□□□ -1.16
HMGCS1-201ENST00000325110 COA5Q86WW8 74 aa7.8□□□□□ -1.16
HMGCS1-201ENST00000325110 V9GYY9 64 aa7.8□□□□□ -1.16
HMGCS1-201ENST00000325110 A6NED7 52 aa7.79□□□□□ -1.16
HMGCS1-201ENST00000325110 H3BPC8 53 aa7.79□□□□□ -1.16
HMGCS1-201ENST00000325110 SPAG11AQ6PDA7 123 aa7.79□□□□□ -1.16
HMGCS1-201ENST00000325110 Q6ZRN7 208 aaPredicted RBP7.78□□□□□ -1.16
HMGCS1-201ENST00000325110 CMYA5Q8N3K9 4069 aa7.78□□□□□ -1.16
HMGCS1-201ENST00000325110 A0A1B0GVX0 72 aa7.77□□□□□ -1.17
HMGCS1-201ENST00000325110 ZNF861PO60384 105 aa7.76□□□□□ -1.17
HMGCS1-201ENST00000325110 A0A087X002 238 aa7.75□□□□□ -1.17
HMGCS1-201ENST00000325110 NOTCH2NLQ7Z3S9 236 aa7.75□□□□□ -1.17
HMGCS1-201ENST00000325110 A8MU10 97 aa7.75□□□□□ -1.17
HMGCS1-201ENST00000325110 C1orf134Q5TEV5 83 aa7.75□□□□□ -1.17
HMGCS1-201ENST00000325110 MRPL34Q9BQ48 92 aaKnown RBP7.75□□□□□ -1.17
HMGCS1-201ENST00000325110 DNAH9Q9NYC9 4486 aa7.75□□□□□ -1.17
HMGCS1-201ENST00000325110 KRTAP13-1Q8IUC0 172 aa7.75□□□□□ -1.17
HMGCS1-201ENST00000325110 TP53AIP1Q9HCN2 124 aa7.75□□□□□ -1.17
HMGCS1-201ENST00000325110 WWC2-AS2Q96NR7 200 aa7.74□□□□□ -1.17
HMGCS1-201ENST00000325110 SPANXA2-OT1Q8N9U9 137 aa7.74□□□□□ -1.17
HMGCS1-201ENST00000325110 CD164Q04900 197 aa7.74□□□□□ -1.17
HMGCS1-201ENST00000325110 PMAIP1Q13794 54 aa7.74□□□□□ -1.17
HMGCS1-201ENST00000325110 Q8N9P0 234 aaPredicted RBP7.72□□□□□ -1.17
HMGCS1-201ENST00000325110 LIMD2Q9BT23 127 aa7.72□□□□□ -1.17
HMGCS1-201ENST00000325110 FBN3Q75N90 2809 aa7.72□□□□□ -1.17
HMGCS1-201ENST00000325110 Q96NJ1 140 aa7.72□□□□□ -1.17
HMGCS1-201ENST00000325110 Q5VV11 94 aa7.7□□□□□ -1.18
HMGCS1-201ENST00000325110 MEGF8Q7Z7M0 2845 aa7.7□□□□□ -1.18
HMGCS1-201ENST00000325110 IGLV7-46A0A075B6I9 117 aa7.68□□□□□ -1.18
HMGCS1-201ENST00000325110 PLECQ15149 4684 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms