RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 IGLV8-61A0A075B6I0 122 aa12.23□□□□□ -0.45
USP48-201ENST00000308271 MIR22HGQ0VDD5 57 aa12.22□□□□□ -0.45
USP48-201ENST00000308271 NOTCH1P46531 2555 aa12.22□□□□□ -0.45
USP48-201ENST00000308271 Q8N9P0 234 aaPredicted RBP12.21□□□□□ -0.45
USP48-201ENST00000308271 ZNF861PO60384 105 aa12.21□□□□□ -0.45
USP48-201ENST00000308271 Q75L30 129 aa12.2□□□□□ -0.46
USP48-201ENST00000308271 SSBP3-AS1Q7Z2R9 100 aa12.2□□□□□ -0.46
USP48-201ENST00000308271 FRYLO94915 3013 aa12.18□□□□□ -0.46
USP48-201ENST00000308271 FREM2Q5SZK8 3169 aa12.17□□□□□ -0.46
USP48-201ENST00000308271 REV3LO60673 3130 aa12.17□□□□□ -0.46
USP48-201ENST00000308271 FLNCQ14315 2725 aa12.16□□□□□ -0.46
USP48-201ENST00000308271 KALRNO60229 2985 aa12.14□□□□□ -0.47
USP48-201ENST00000308271 K7EIL1 84 aa12.14□□□□□ -0.47
USP48-201ENST00000308271 Q5VV11 94 aa12.11□□□□□ -0.47
USP48-201ENST00000308271 PRR26Q8N8Z3 221 aa12.11□□□□□ -0.47
USP48-201ENST00000308271 Q96NJ1 140 aa12.1□□□□□ -0.47
USP48-201ENST00000308271 UBR5O95071 2799 aaPredicted RBP12.1□□□□□ -0.47
USP48-201ENST00000308271 LINC01558Q9Y6Z2 57 aa12.1□□□□□ -0.47
USP48-201ENST00000308271 MMP24-AS1A0A0U1RRL7 71 aa12.08□□□□□ -0.48
USP48-201ENST00000308271 KRTAP26-1Q6PEX3 210 aa12.08□□□□□ -0.48
USP48-201ENST00000308271 TYMSOSQ8TAI1 123 aa12.08□□□□□ -0.48
USP48-201ENST00000308271 ANAPC11Q9NYG5 84 aa12.07□□□□□ -0.48
USP48-201ENST00000308271 TNP2Q05952 138 aa12.07□□□□□ -0.48
USP48-201ENST00000308271 PSORS1C2Q9UIG4 136 aa12.06□□□□□ -0.48
USP48-201ENST00000308271 RBM12B-AS1Q9P1G2 102 aa12.06□□□□□ -0.48
USP48-201ENST00000308271 A0A087WTM6 91 aa12.04□□□□□ -0.48
USP48-201ENST00000308271 LINC00472Q9H8W2 130 aa12.03□□□□□ -0.48
USP48-201ENST00000308271 ADGRG4Q8IZF6 3080 aa12.02□□□□□ -0.48
USP48-201ENST00000308271 SPRR1BP22528 89 aa12.02□□□□□ -0.49
USP48-201ENST00000308271 NBEAL2Q6ZNJ1 2754 aa12.01□□□□□ -0.49
USP48-201ENST00000308271 APLNQ9ULZ1 77 aa11.99□□□□□ -0.49
USP48-201ENST00000308271 IGLV7-43P04211 117 aa11.98□□□□□ -0.49
USP48-201ENST00000308271 ZCCHC13Q8WW36 166 aaKnown RBP11.97□□□□□ -0.49
USP48-201ENST00000308271 TACC2O95359 2948 aa11.96□□□□□ -0.49
USP48-201ENST00000308271 PLA2G1BP04054 148 aaKnown RBP11.94□□□□□ -0.5
USP48-201ENST00000308271 KRTAP4-16G5E9R7 235 aaPredicted RBP11.94□□□□□ -0.5
USP48-201ENST00000308271 COL12A1Q99715 3063 aa11.92□□□□□ -0.5
USP48-201ENST00000308271 HRES1P13985 223 aa11.92□□□□□ -0.5
USP48-201ENST00000308271 ITPR2Q14571 2701 aa11.91□□□□□ -0.5
USP48-201ENST00000308271 ATMQ13315 3056 aa11.91□□□□□ -0.5
USP48-201ENST00000308271 WWC2-AS2Q96NR7 200 aa11.9□□□□□ -0.5
USP48-201ENST00000308271 BOD1L1Q8NFC6 3051 aa11.9□□□□□ -0.51
USP48-201ENST00000308271 DMXL2Q8TDJ6 3036 aa11.89□□□□□ -0.51
USP48-201ENST00000308271 TNRC18O15417 2968 aaPredicted RBP11.89□□□□□ -0.51
USP48-201ENST00000308271 NSD1Q96L73 2696 aaPredicted RBP11.88□□□□□ -0.51
USP48-201ENST00000308271 KRTAP29-1A8MX34 341 aaPredicted RBP11.86□□□□□ -0.51
USP48-201ENST00000308271 LCE6AA0A183 80 aa11.83□□□□□ -0.52
USP48-201ENST00000308271 LRBAP50851 2863 aa11.83□□□□□ -0.52
USP48-201ENST00000308271 SPINK7P58062 85 aa11.83□□□□□ -0.52
USP48-201ENST00000308271 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.82□□□□□ -0.52
USP48-201ENST00000308271 SPEGQ15772 3267 aa11.82□□□□□ -0.52
USP48-201ENST00000308271 SPINT4Q6UDR6 99 aa11.82□□□□□ -0.52
USP48-201ENST00000308271 ITPR1Q14643 2758 aa11.8□□□□□ -0.52
USP48-201ENST00000308271 LINC00304Q8N9R0 145 aa11.78□□□□□ -0.52
USP48-201ENST00000308271 EYSQ5T1H1 3165 aa11.78□□□□□ -0.52
USP48-201ENST00000308271 LINC01554Q52M75 96 aa11.78□□□□□ -0.52
USP48-201ENST00000308271 Q8N1X5 172 aa11.77□□□□□ -0.53
USP48-201ENST00000308271 ZZEF1O43149 2961 aa11.76□□□□□ -0.53
USP48-201ENST00000308271 PRAC1Q96KF2 57 aa11.73□□□□□ -0.53
USP48-201ENST00000308271 Q6ZR54 194 aa11.72□□□□□ -0.53
USP48-201ENST00000308271 Q5W150 140 aa11.68□□□□□ -0.54
USP48-201ENST00000308271 KRTAP1-5Q9BYS1 174 aa11.68□□□□□ -0.54
USP48-201ENST00000308271 PLAC8Q9NZF1 115 aa11.66□□□□□ -0.54
USP48-201ENST00000308271 STAB2Q8WWQ8 2551 aa11.65□□□□□ -0.54
USP48-201ENST00000308271 C9orf92A6NGG3 77 aa11.64□□□□□ -0.55
USP48-201ENST00000308271 CRIPTQ9P021 101 aa11.64□□□□□ -0.55
USP48-201ENST00000308271 HIVEP1P15822 2718 aa11.64□□□□□ -0.55
USP48-201ENST00000308271 DMXL1Q9Y485 3027 aa11.61□□□□□ -0.55
USP48-201ENST00000308271 A0A1B0GU33 70 aa11.6□□□□□ -0.55
USP48-201ENST00000308271 DMAC1Q96GE9 116 aa11.6□□□□□ -0.55
USP48-201ENST00000308271 TENM4Q6N022 2769 aa11.59□□□□□ -0.55
USP48-201ENST00000308271 CFAP47Q6ZTR5 3102 aa11.58□□□□□ -0.56
USP48-201ENST00000308271 LINC00483Q53H64 154 aa11.58□□□□□ -0.56
USP48-201ENST00000308271 ASH1LQ9NR48 2969 aaKnown RBP11.55□□□□□ -0.56
USP48-201ENST00000308271 KRTAP7-1Q8IUC3 87 aa11.53□□□□□ -0.56
USP48-201ENST00000308271 ASB16-AS1Q495Z4 193 aa11.52□□□□□ -0.56
USP48-201ENST00000308271 SPTBN5Q9NRC6 3674 aaKnown RBP11.52□□□□□ -0.56
USP48-201ENST00000308271 CSAG1Q6PB30 78 aa11.52□□□□□ -0.57
USP48-201ENST00000308271 A6NN06 94 aa11.51□□□□□ -0.57
USP48-201ENST00000308271 UTP20O75691 2785 aaKnown RBP11.49□□□□□ -0.57
USP48-201ENST00000308271 FLG2Q5D862 2391 aaPredicted RBP11.46□□□□□ -0.57
USP48-201ENST00000308271 KMT2BQ9UMN6 2715 aaPredicted RBP11.46□□□□□ -0.57
USP48-201ENST00000308271 CRYBG3Q68DQ2 2970 aa11.46□□□□□ -0.57
USP48-201ENST00000308271 A0A0D9SG42 100 aa11.44□□□□□ -0.58
USP48-201ENST00000308271 HRNRQ86YZ3 2850 aaPredicted RBP11.44□□□□□ -0.58
USP48-201ENST00000308271 LOC400499M0QZD8 3231 aa11.43□□□□□ -0.58
USP48-201ENST00000308271 USP34Q70CQ2 3546 aa11.42□□□□□ -0.58
USP48-201ENST00000308271 H3BS24 57 aa11.42□□□□□ -0.58
USP48-201ENST00000308271 PANO1I0J062 215 aa11.42□□□□□ -0.58
USP48-201ENST00000308271 ZANQ9Y493 2812 aa11.41□□□□□ -0.58
USP48-201ENST00000308271 A8MU10 97 aa11.4□□□□□ -0.58
USP48-201ENST00000308271 SMR3BP02814 79 aaPredicted RBP11.4□□□□□ -0.58
USP48-201ENST00000308271 APCP25054 2843 aa11.4□□□□□ -0.59
USP48-201ENST00000308271 SPATA8Q6RVD6 105 aa11.39□□□□□ -0.59
USP48-201ENST00000308271 KRTAP11-1Q8IUC1 163 aa11.39□□□□□ -0.59
USP48-201ENST00000308271 DMBT1Q9UGM3 2413 aaPredicted RBP11.39□□□□□ -0.59
USP48-201ENST00000308271 A0A087X002 238 aa11.38□□□□□ -0.59
USP48-201ENST00000308271 NOTCH2NLQ7Z3S9 236 aa11.38□□□□□ -0.59
USP48-201ENST00000308271 NIPBLQ6KC79 2804 aaeCLIP11.34□□□□□ -0.593e-6■□□□□ 10.6
USP48-201ENST00000308271 J3QL48 77 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms