RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 DEFB116Q30KQ4 102 aa11.72□□□□□ -0.53
CPSF3-201ENST00000238112 CHTF8P0CG12 524 aa11.71□□□□□ -0.53
CPSF3-201ENST00000238112 PHF5AQ7RTV0 110 aaKnown RBP11.71□□□□□ -0.53
CPSF3-201ENST00000238112 LINC00474Q9P2X8 69 aa11.71□□□□□ -0.53
CPSF3-201ENST00000238112 APLNQ9ULZ1 77 aa11.69□□□□□ -0.54
CPSF3-201ENST00000238112 DNAH10Q8IVF4 4471 aa11.68□□□□□ -0.54
CPSF3-201ENST00000238112 KRTAP11-1Q8IUC1 163 aa11.67□□□□□ -0.54
CPSF3-201ENST00000238112 H0Y9J4 135 aa11.66□□□□□ -0.54
CPSF3-201ENST00000238112 LYSTQ99698 3801 aa11.66□□□□□ -0.54
CPSF3-201ENST00000238112 FAM229BQ4G0N7 80 aa11.66□□□□□ -0.54
CPSF3-201ENST00000238112 ZCCHC13Q8WW36 166 aaKnown RBP11.66□□□□□ -0.54
CPSF3-201ENST00000238112 WFDC13Q8IUB5 93 aa11.65□□□□□ -0.54
CPSF3-201ENST00000238112 SPRR1BP22528 89 aa11.64□□□□□ -0.55
CPSF3-201ENST00000238112 PKIGQ9Y2B9 76 aa11.63□□□□□ -0.55
CPSF3-201ENST00000238112 STAB2Q8WWQ8 2551 aa11.63□□□□□ -0.55
CPSF3-201ENST00000238112 C9orf163Q8N9P6 203 aa11.63□□□□□ -0.55
CPSF3-201ENST00000238112 MGAM2Q2M2H8 2515 aa11.62□□□□□ -0.55
CPSF3-201ENST00000238112 RPL37AP61513 92 aaKnown RBP11.62□□□□□ -0.55
CPSF3-201ENST00000238112 B9D2Q9BPU9 175 aa11.61□□□□□ -0.55
CPSF3-201ENST00000238112 LINC00336Q6ZUF6 198 aa11.6□□□□□ -0.55
CPSF3-201ENST00000238112 MPLKIPQ8TAP9 179 aa11.6□□□□□ -0.55
CPSF3-201ENST00000238112 LRCOL1A6NCL2 159 aa11.58□□□□□ -0.56
CPSF3-201ENST00000238112 DNAH9Q9NYC9 4486 aa11.58□□□□□ -0.56
CPSF3-201ENST00000238112 MP68P56378 58 aa11.57□□□□□ -0.56
CPSF3-201ENST00000238112 NBDYA0A0U1RRE5 68 aa11.55□□□□□ -0.56
CPSF3-201ENST00000238112 hDV103S1A0JD37 113 aa11.55□□□□□ -0.56
CPSF3-201ENST00000238112 COL7A1Q02388 2944 aa11.55□□□□□ -0.56
CPSF3-201ENST00000238112 PRR15Q8IV56 129 aa11.55□□□□□ -0.56
CPSF3-201ENST00000238112 KRTAP29-1A8MX34 341 aaPredicted RBP11.54□□□□□ -0.56
CPSF3-201ENST00000238112 NDUFB1O75438 58 aa11.54□□□□□ -0.56
CPSF3-201ENST00000238112 CASC2Q6XLA1 102 aa11.54□□□□□ -0.56
CPSF3-201ENST00000238112 A8MWP4 228 aa11.53□□□□□ -0.56
CPSF3-201ENST00000238112 C1orf64Q8NEQ6 169 aa11.53□□□□□ -0.56
CPSF3-201ENST00000238112 PRO0628Q9UI54 55 aa11.53□□□□□ -0.56
CPSF3-201ENST00000238112 LINC00472Q9H8W2 130 aa11.53□□□□□ -0.56
CPSF3-201ENST00000238112 PANO1I0J062 215 aa11.51□□□□□ -0.57
CPSF3-201ENST00000238112 MDFIQ99750 246 aa11.51□□□□□ -0.57
CPSF3-201ENST00000238112 SRRM2Q9UQ35 2752 aaKnown RBP11.5□□□□□ -0.57
CPSF3-201ENST00000238112 LINC00208Q96KT6 92 aa11.49□□□□□ -0.57
CPSF3-201ENST00000238112 PRR4Q16378 134 aa11.49□□□□□ -0.57
CPSF3-201ENST00000238112 KRTAP13-1Q8IUC0 172 aa11.49□□□□□ -0.57
CPSF3-201ENST00000238112 TRAV22A0A0B4J277 110 aa11.48□□□□□ -0.57
CPSF3-201ENST00000238112 Q6ZRN7 208 aaPredicted RBP11.48□□□□□ -0.57
CPSF3-201ENST00000238112 CYP4F30PQ9H0H9 118 aa11.48□□□□□ -0.57
CPSF3-201ENST00000238112 NUPR2A6NF83 97 aa11.48□□□□□ -0.57
CPSF3-201ENST00000238112 H0Y9P7 68 aa11.47□□□□□ -0.57
CPSF3-201ENST00000238112 DNAH7Q8WXX0 4024 aa11.45□□□□□ -0.58
CPSF3-201ENST00000238112 DYNC2H1Q8NCM8 4307 aaKnown RBP11.45□□□□□ -0.58
CPSF3-201ENST00000238112 H3BPC8 53 aa11.44□□□□□ -0.58
CPSF3-201ENST00000238112 SPACA4Q8TDM5 124 aa11.44□□□□□ -0.58
CPSF3-201ENST00000238112 TENM2Q9NT68 2774 aa11.44□□□□□ -0.58
CPSF3-201ENST00000238112 BRK1Q8WUW1 75 aa11.43□□□□□ -0.58
CPSF3-201ENST00000238112 CSMD3Q7Z407 3707 aa11.43□□□□□ -0.58
CPSF3-201ENST00000238112 IGLV9-49A0A0B4J1Y8 123 aa11.43□□□□□ -0.58
CPSF3-201ENST00000238112 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.43□□□□□ -0.58
CPSF3-201ENST00000238112 MMP24-AS1A0A0U1RRL7 71 aa11.39□□□□□ -0.59
CPSF3-201ENST00000238112 Q1T7F1 81 aa11.38□□□□□ -0.59
CPSF3-201ENST00000238112 PLECQ15149 4684 aaKnown RBP11.36□□□□□ -0.59
CPSF3-201ENST00000238112 SPANXA2-OT1Q8N9U9 137 aa11.36□□□□□ -0.59
CPSF3-201ENST00000238112 A0A087WTM6 91 aa11.35□□□□□ -0.59
CPSF3-201ENST00000238112 LINC00483Q53H64 154 aa11.35□□□□□ -0.59
CPSF3-201ENST00000238112 ZNF706Q9Y5V0 76 aaPredicted RBP11.35□□□□□ -0.59
CPSF3-201ENST00000238112 Q96NJ1 140 aa11.34□□□□□ -0.59
CPSF3-201ENST00000238112 MOBPQ13875 183 aa11.3□□□□□ -0.6
CPSF3-201ENST00000238112 RTL8CO15255 209 aa11.3□□□□□ -0.6
CPSF3-201ENST00000238112 PSORS1C2Q9UIG4 136 aa11.29□□□□□ -0.6
CPSF3-201ENST00000238112 IGLV5-52A0A0A0MRZ9 124 aa11.28□□□□□ -0.6
CPSF3-201ENST00000238112 WWC2-AS2Q96NR7 200 aa11.27□□□□□ -0.61
CPSF3-201ENST00000238112 TP53AIP1Q9HCN2 124 aa11.27□□□□□ -0.61
CPSF3-201ENST00000238112 PSPHP1O15172 72 aa11.26□□□□□ -0.61
CPSF3-201ENST00000238112 C8orf17Q9NRJ1 99 aa11.26□□□□□ -0.61
CPSF3-201ENST00000238112 ASB16-AS1Q495Z4 193 aa11.25□□□□□ -0.61
CPSF3-201ENST00000238112 V9GYY9 64 aa11.25□□□□□ -0.61
CPSF3-201ENST00000238112 CDK2AP2O75956 126 aa11.24□□□□□ -0.61
CPSF3-201ENST00000238112 IGHV6-1A0A0B4J1U7 121 aa11.24□□□□□ -0.61
CPSF3-201ENST00000238112 ZNF861PO60384 105 aa11.24□□□□□ -0.61
CPSF3-201ENST00000238112 A0A1B0GVX0 72 aa11.23□□□□□ -0.61
CPSF3-201ENST00000238112 ANAPC11Q9NYG5 84 aa11.23□□□□□ -0.61
CPSF3-201ENST00000238112 PLAC8Q9NZF1 115 aa11.23□□□□□ -0.61
CPSF3-201ENST00000238112 NDUFS5O43920 106 aa11.2□□□□□ -0.62
CPSF3-201ENST00000238112 STARD9Q9P2P6 4700 aa11.2□□□□□ -0.62
CPSF3-201ENST00000238112 VPS13DQ5THJ4 4388 aa11.18□□□□□ -0.62
CPSF3-201ENST00000238112 IGLV7-46A0A075B6I9 117 aa11.18□□□□□ -0.62
CPSF3-201ENST00000238112 PCOTHQ58A44 107 aa11.18□□□□□ -0.62
CPSF3-201ENST00000238112 Q6ZR54 194 aa11.18□□□□□ -0.62
CPSF3-201ENST00000238112 A8MUN3 132 aa11.17□□□□□ -0.62
CPSF3-201ENST00000238112 HECTD4Q9Y4D8 3996 aa11.16□□□□□ -0.62
CPSF3-201ENST00000238112 MRPL34Q9BQ48 92 aaKnown RBP11.15□□□□□ -0.62
CPSF3-201ENST00000238112 COA5Q86WW8 74 aa11.13□□□□□ -0.63
CPSF3-201ENST00000238112 Q8N9P0 234 aaPredicted RBP11.13□□□□□ -0.63
CPSF3-201ENST00000238112 CD164Q04900 197 aa11.12□□□□□ -0.63
CPSF3-201ENST00000238112 LIMD2Q9BT23 127 aa11.12□□□□□ -0.63
CPSF3-201ENST00000238112 C1orf195Q5TG92 126 aa11.12□□□□□ -0.63
CPSF3-201ENST00000238112 C1orf134Q5TEV5 83 aa11.1□□□□□ -0.63
CPSF3-201ENST00000238112 FRAS1Q86XX4 4008 aa11.09□□□□□ -0.63
CPSF3-201ENST00000238112 PRKDCP78527 4128 aaKnown RBP11.09□□□□□ -0.63
CPSF3-201ENST00000238112 A0A087X002 238 aa11.09□□□□□ -0.63
CPSF3-201ENST00000238112 IGLV7-43P04211 117 aa11.09□□□□□ -0.63
CPSF3-201ENST00000238112 Q5VV11 94 aa11.09□□□□□ -0.63
CPSF3-201ENST00000238112 NOTCH2NLQ7Z3S9 236 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms