RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 UBE2BP63146 152 aa6.74□□□□□ -1.33
USP28-201ENST00000003302 PDE6GP18545 87 aa6.74□□□□□ -1.33
USP28-201ENST00000003302 MRPL55Q7Z7F7 128 aaKnown RBP6.73□□□□□ -1.33
USP28-201ENST00000003302 DYNC2H1Q8NCM8 4307 aaKnown RBP6.73□□□□□ -1.33
USP28-201ENST00000003302 K7EIL1 84 aa6.73□□□□□ -1.33
USP28-201ENST00000003302 ETDCA0A1B0GVM5 59 aa6.73□□□□□ -1.33
USP28-201ENST00000003302 MPLKIPQ8TAP9 179 aa6.72□□□□□ -1.33
USP28-201ENST00000003302 LINC00476Q8WZB0 136 aa6.71□□□□□ -1.33
USP28-201ENST00000003302 A0A0U1RQV1 116 aa6.71□□□□□ -1.34
USP28-201ENST00000003302 C5orf47Q569G3 176 aa6.71□□□□□ -1.34
USP28-201ENST00000003302 IGFL1Q6UW32 110 aa6.7□□□□□ -1.34
USP28-201ENST00000003302 PHF5AQ7RTV0 110 aaKnown RBP6.7□□□□□ -1.34
USP28-201ENST00000003302 Q8NBF4 154 aa6.7□□□□□ -1.34
USP28-201ENST00000003302 TLX1NBP0CAT3 122 aa6.69□□□□□ -1.34
USP28-201ENST00000003302 WFDC13Q8IUB5 93 aa6.68□□□□□ -1.34
USP28-201ENST00000003302 DNAH11Q96DT5 4516 aa6.68□□□□□ -1.34
USP28-201ENST00000003302 SERP1Q9Y6X1 66 aa6.68□□□□□ -1.34
USP28-201ENST00000003302 HYDINQ4G0P3 5121 aa6.67□□□□□ -1.34
USP28-201ENST00000003302 A0A087WSZ3 146 aa6.67□□□□□ -1.34
USP28-201ENST00000003302 FAT2Q9NYQ8 4349 aa6.67□□□□□ -1.34
USP28-201ENST00000003302 PRYO14603 147 aa6.67□□□□□ -1.34
USP28-201ENST00000003302 REG3GQ6UW15 175 aa6.66□□□□□ -1.34
USP28-201ENST00000003302 ALMS1Q8TCU4 4167 aa6.66□□□□□ -1.34
USP28-201ENST00000003302 SPRR4Q96PI1 79 aa6.65□□□□□ -1.34
USP28-201ENST00000003302 DHRS4-AS1Q9P1J3 65 aa6.64□□□□□ -1.35
USP28-201ENST00000003302 PSCAO43653 123 aa6.64□□□□□ -1.35
USP28-201ENST00000003302 IGLV5-37A0A075B6J1 123 aa6.64□□□□□ -1.35
USP28-201ENST00000003302 A8MU10 97 aa6.63□□□□□ -1.35
USP28-201ENST00000003302 BCE1O60756 84 aa6.63□□□□□ -1.35
USP28-201ENST00000003302 PLA2G2DQ9UNK4 145 aa6.63□□□□□ -1.35
USP28-201ENST00000003302 DNAH5Q8TE73 4624 aa6.61□□□□□ -1.35
USP28-201ENST00000003302 H3BQ85 93 aa6.61□□□□□ -1.35
USP28-201ENST00000003302 ANAPC11Q9NYG5 84 aa6.61□□□□□ -1.35
USP28-201ENST00000003302 LRP1BQ9NZR2 4599 aa6.61□□□□□ -1.35
USP28-201ENST00000003302 C1orf64Q8NEQ6 169 aa6.59□□□□□ -1.35
USP28-201ENST00000003302 ZCCHC13Q8WW36 166 aaKnown RBP6.59□□□□□ -1.35
USP28-201ENST00000003302 LCE6AA0A183 80 aa6.57□□□□□ -1.36
USP28-201ENST00000003302 C16orf90A8MZG2 172 aa6.57□□□□□ -1.36
USP28-201ENST00000003302 SMIM26A0A096LP01 95 aa6.57□□□□□ -1.36
USP28-201ENST00000003302 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.56□□□□□ -1.36
USP28-201ENST00000003302 HCG22E2RYF7 251 aa6.56□□□□□ -1.36
USP28-201ENST00000003302 PKIGQ9Y2B9 76 aa6.56□□□□□ -1.36
USP28-201ENST00000003302 PKHD1P08F94 4074 aa6.55□□□□□ -1.36
USP28-201ENST00000003302 CNBPP62633 177 aaKnown RBP6.55□□□□□ -1.36
USP28-201ENST00000003302 BRK1Q8WUW1 75 aa6.55□□□□□ -1.36
USP28-201ENST00000003302 hDV103S1A0JD37 113 aa6.53□□□□□ -1.36
USP28-201ENST00000003302 PSPHP1O15172 72 aa6.53□□□□□ -1.36
USP28-201ENST00000003302 UBE2AP49459 152 aa6.53□□□□□ -1.36
USP28-201ENST00000003302 MDFIQ99750 246 aa6.53□□□□□ -1.36
USP28-201ENST00000003302 NDUFC1O43677 76 aa6.53□□□□□ -1.36
USP28-201ENST00000003302 KRTAP29-1A8MX34 341 aaPredicted RBP6.53□□□□□ -1.36
USP28-201ENST00000003302 F8WDY8 70 aa6.53□□□□□ -1.36
USP28-201ENST00000003302 APLNQ9ULZ1 77 aa6.52□□□□□ -1.37
USP28-201ENST00000003302 LINC00208Q96KT6 92 aa6.52□□□□□ -1.37
USP28-201ENST00000003302 VPS13BQ7Z7G8 4022 aa6.52□□□□□ -1.37
USP28-201ENST00000003302 A0A087X002 238 aa6.51□□□□□ -1.37
USP28-201ENST00000003302 IGLV9-49A0A0B4J1Y8 123 aa6.51□□□□□ -1.37
USP28-201ENST00000003302 NOTCH2NLQ7Z3S9 236 aa6.51□□□□□ -1.37
USP28-201ENST00000003302 UBE2DNLQ8IWF7 75 aa6.5□□□□□ -1.37
USP28-201ENST00000003302 LINC00472Q9H8W2 130 aa6.5□□□□□ -1.37
USP28-201ENST00000003302 Q6ZRN7 208 aaPredicted RBP6.49□□□□□ -1.37
USP28-201ENST00000003302 PRR15Q8IV56 129 aa6.48□□□□□ -1.37
USP28-201ENST00000003302 IGLV8-61A0A075B6I0 122 aa6.47□□□□□ -1.37
USP28-201ENST00000003302 C9orf163Q8N9P6 203 aa6.47□□□□□ -1.37
USP28-201ENST00000003302 MOBPQ13875 183 aa6.47□□□□□ -1.37
USP28-201ENST00000003302 Q96NJ1 140 aa6.46□□□□□ -1.37
USP28-201ENST00000003302 PRO0628Q9UI54 55 aa6.46□□□□□ -1.37
USP28-201ENST00000003302 PKD1P98161 4303 aa6.46□□□□□ -1.38
USP28-201ENST00000003302 KRTAP13-1Q8IUC0 172 aa6.46□□□□□ -1.38
USP28-201ENST00000003302 H0Y9J4 135 aa6.46□□□□□ -1.38
USP28-201ENST00000003302 CASC2Q6XLA1 102 aa6.45□□□□□ -1.38
USP28-201ENST00000003302 TRAV22A0A0B4J277 110 aa6.44□□□□□ -1.38
USP28-201ENST00000003302 A8MUN3 132 aa6.44□□□□□ -1.38
USP28-201ENST00000003302 MMP24-AS1A0A0U1RRL7 71 aa6.44□□□□□ -1.38
USP28-201ENST00000003302 H0Y9P7 68 aa6.43□□□□□ -1.38
USP28-201ENST00000003302 PCOTHQ58A44 107 aa6.43□□□□□ -1.38
USP28-201ENST00000003302 NBDYA0A0U1RRE5 68 aa6.42□□□□□ -1.38
USP28-201ENST00000003302 ATP5EP56381 51 aaPredicted RBP6.41□□□□□ -1.38
USP28-201ENST00000003302 A8MWP4 228 aa6.41□□□□□ -1.38
USP28-201ENST00000003302 A0A1B0GW54 56 aa6.41□□□□□ -1.38
USP28-201ENST00000003302 SPRR1BP22528 89 aa6.4□□□□□ -1.39
USP28-201ENST00000003302 PSORS1C2Q9UIG4 136 aa6.39□□□□□ -1.39
USP28-201ENST00000003302 SPACA4Q8TDM5 124 aa6.38□□□□□ -1.39
USP28-201ENST00000003302 CD164Q04900 197 aa6.37□□□□□ -1.39
USP28-201ENST00000003302 IGHV6-1A0A0B4J1U7 121 aa6.37□□□□□ -1.39
USP28-201ENST00000003302 WWC2-AS2Q96NR7 200 aa6.37□□□□□ -1.39
USP28-201ENST00000003302 B9D2Q9BPU9 175 aa6.36□□□□□ -1.39
USP28-201ENST00000003302 FAT1Q14517 4588 aa6.36□□□□□ -1.39
USP28-201ENST00000003302 CYP4F30PQ9H0H9 118 aa6.36□□□□□ -1.39
USP28-201ENST00000003302 SPINK6Q6UWN8 80 aa6.35□□□□□ -1.39
USP28-201ENST00000003302 MP68P56378 58 aa6.35□□□□□ -1.39
USP28-201ENST00000003302 Q5VV11 94 aa6.35□□□□□ -1.39
USP28-201ENST00000003302 Q1T7F1 81 aa6.34□□□□□ -1.39
USP28-201ENST00000003302 A0A087WTM6 91 aa6.34□□□□□ -1.39
USP28-201ENST00000003302 Q5W150 140 aa6.34□□□□□ -1.39
USP28-201ENST00000003302 Q6ZR54 194 aa6.33□□□□□ -1.4
USP28-201ENST00000003302 Q8N9P0 234 aaPredicted RBP6.32□□□□□ -1.4
USP28-201ENST00000003302 NDUFS5O43920 106 aa6.31□□□□□ -1.4
USP28-201ENST00000003302 RTL8CO15255 209 aa6.31□□□□□ -1.4
USP28-201ENST00000003302 C8orf17Q9NRJ1 99 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms