RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 BCE1O60756 84 aa7.45□□□□□ -1.22
CLN3-244ENST00000636147 IGLV6-57P01721 117 aa7.45□□□□□ -1.22
CLN3-244ENST00000636147 Q8NDZ9 215 aa7.45□□□□□ -1.22
CLN3-244ENST00000636147 F8WDY8 70 aa7.44□□□□□ -1.22
CLN3-244ENST00000636147 RETNQ9HD89 108 aa7.44□□□□□ -1.22
CLN3-244ENST00000636147 LINC00167Q96N53 147 aa7.43□□□□□ -1.22
CLN3-244ENST00000636147 ELOF1P60002 83 aaKnown RBP7.43□□□□□ -1.22
CLN3-244ENST00000636147 LYPD5Q6UWN5 251 aa7.43□□□□□ -1.22
CLN3-244ENST00000636147 LINC00208Q96KT6 92 aa7.43□□□□□ -1.22
CLN3-244ENST00000636147 C19orf73Q9NVV2 129 aa7.43□□□□□ -1.22
CLN3-244ENST00000636147 NDUFS5O43920 106 aa7.42□□□□□ -1.22
CLN3-244ENST00000636147 IGHV4-30-4P0DP06 118 aa7.42□□□□□ -1.22
CLN3-244ENST00000636147 H0Y9J4 135 aa7.42□□□□□ -1.22
CLN3-244ENST00000636147 MGAM2Q2M2H8 2515 aa7.42□□□□□ -1.22
CLN3-244ENST00000636147 DEFB131BA0A096LNP1 70 aa7.4□□□□□ -1.22
CLN3-244ENST00000636147 NIPBLQ6KC79 2804 aaeCLIP7.4□□□□□ -1.22
CLN3-244ENST00000636147 MAST4O15021 2626 aa7.4□□□□□ -1.23
CLN3-244ENST00000636147 Q6ZTC4 211 aa7.4□□□□□ -1.23
CLN3-244ENST00000636147 DHRS4-AS1Q9P1J3 65 aa7.4□□□□□ -1.23
CLN3-244ENST00000636147 NOTCH1P46531 2555 aa7.39□□□□□ -1.23
CLN3-244ENST00000636147 CHKB-CPT1BH3BT56 60 aa7.39□□□□□ -1.23
CLN3-244ENST00000636147 TRBV7-4A0A0J9YYF1 115 aa7.39□□□□□ -1.23
CLN3-244ENST00000636147 C7orf33Q8WU49 177 aa7.38□□□□□ -1.23
CLN3-244ENST00000636147 VPREB1P12018 145 aa7.38□□□□□ -1.23
CLN3-244ENST00000636147 INAFM1C9JVW0 142 aa7.37□□□□□ -1.23
CLN3-244ENST00000636147 PMAIP1Q13794 54 aa7.37□□□□□ -1.23
CLN3-244ENST00000636147 UBE2DNLQ8IWF7 75 aa7.37□□□□□ -1.23
CLN3-244ENST00000636147 ST20-AS1Q8NBB2 130 aa7.37□□□□□ -1.23
CLN3-244ENST00000636147 OXLD1Q5BKU9 147 aa7.37□□□□□ -1.23
CLN3-244ENST00000636147 FP248Q71RG6 208 aaPredicted RBP7.37□□□□□ -1.23
CLN3-244ENST00000636147 A0A087WSZ3 146 aa7.37□□□□□ -1.23
CLN3-244ENST00000636147 CDK2AP2O75956 126 aa7.37□□□□□ -1.23
CLN3-244ENST00000636147 C11orf45Q8TAV5 145 aa7.37□□□□□ -1.23
CLN3-244ENST00000636147 UBE2AP49459 152 aa7.36□□□□□ -1.23
CLN3-244ENST00000636147 IGKV4-1P06312 121 aa7.36□□□□□ -1.23
CLN3-244ENST00000636147 Q6ZRP5 223 aa7.35□□□□□ -1.23
CLN3-244ENST00000636147 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.35□□□□□ -1.23
CLN3-244ENST00000636147 NBEAL1Q6ZS30 2694 aa7.35□□□□□ -1.23
CLN3-244ENST00000636147 A0A0G2JQZ4 141 aa7.34□□□□□ -1.23
CLN3-244ENST00000636147 A0A1W2PNN7 141 aa7.34□□□□□ -1.23
CLN3-244ENST00000636147 LINC00528Q8N1L1 170 aa7.34□□□□□ -1.23
CLN3-244ENST00000636147 C16orf95Q9H693 158 aa7.34□□□□□ -1.23
CLN3-244ENST00000636147 COL6A5A8TX70 2615 aa7.34□□□□□ -1.23
CLN3-244ENST00000636147 A6NED7 52 aa7.34□□□□□ -1.23
CLN3-244ENST00000636147 NDUFB1O75438 58 aa7.33□□□□□ -1.24
CLN3-244ENST00000636147 HIVEP1P15822 2718 aa7.32□□□□□ -1.24
CLN3-244ENST00000636147 HCG22E2RYF7 251 aa7.32□□□□□ -1.24
CLN3-244ENST00000636147 FAM229BQ4G0N7 80 aa7.32□□□□□ -1.24
CLN3-244ENST00000636147 PRR15LQ9BU68 103 aa7.32□□□□□ -1.24
CLN3-244ENST00000636147 PRLHP81277 87 aa7.32□□□□□ -1.24
CLN3-244ENST00000636147 K7EQZ3 153 aa7.31□□□□□ -1.24
CLN3-244ENST00000636147 ITPR2Q14571 2701 aa7.31□□□□□ -1.24
CLN3-244ENST00000636147 SERTAD4-AS1Q5TG53 156 aa7.31□□□□□ -1.24
CLN3-244ENST00000636147 Q8NAQ8 132 aa7.31□□□□□ -1.24
CLN3-244ENST00000636147 GVQW2A0A096LPI5 108 aaPredicted RBP7.3□□□□□ -1.24
CLN3-244ENST00000636147 Q8N377 158 aa7.3□□□□□ -1.24
CLN3-244ENST00000636147 C1orf64Q8NEQ6 169 aa7.3□□□□□ -1.24
CLN3-244ENST00000636147 FAM168BA1KXE4 195 aa7.3□□□□□ -1.24
CLN3-244ENST00000636147 Q8NBF4 154 aa7.3□□□□□ -1.24
CLN3-244ENST00000636147 MRPL55Q7Z7F7 128 aaKnown RBP7.3□□□□□ -1.24
CLN3-244ENST00000636147 LINC00612Q8N6U2 182 aa7.29□□□□□ -1.24
CLN3-244ENST00000636147 A8MUN3 132 aa7.29□□□□□ -1.24
CLN3-244ENST00000636147 PCOTHQ58A44 107 aa7.29□□□□□ -1.24
CLN3-244ENST00000636147 PRR34Q9NV39 138 aa7.29□□□□□ -1.24
CLN3-244ENST00000636147 RPL37AP61513 92 aaKnown RBP7.28□□□□□ -1.24
CLN3-244ENST00000636147 ERC2-IT1O76042 136 aa7.28□□□□□ -1.24
CLN3-244ENST00000636147 H0Y9P7 68 aa7.28□□□□□ -1.24
CLN3-244ENST00000636147 OCR1Q9BZK8 76 aa7.28□□□□□ -1.24
CLN3-244ENST00000636147 CASC2Q6XLA1 102 aa7.27□□□□□ -1.25
CLN3-244ENST00000636147 Q6ZRX8 168 aa7.27□□□□□ -1.25
CLN3-244ENST00000636147 REG3GQ6UW15 175 aa7.27□□□□□ -1.25
CLN3-244ENST00000636147 B9D2Q9BPU9 175 aa7.26□□□□□ -1.25
CLN3-244ENST00000636147 EPM2AB3EWF7 344 aa7.26□□□□□ -1.25
CLN3-244ENST00000636147 A0A1W2PNM2 257 aa7.25□□□□□ -1.25
CLN3-244ENST00000636147 LINC00476Q8WZB0 136 aa7.25□□□□□ -1.25
CLN3-244ENST00000636147 C15orf56Q8N910 161 aa7.25□□□□□ -1.25
CLN3-244ENST00000636147 Q9BRP9 147 aa7.24□□□□□ -1.25
CLN3-244ENST00000636147 KRTAP10-3P60369 221 aa7.23□□□□□ -1.25
CLN3-244ENST00000636147 STAB1Q9NY15 2570 aa7.22□□□□□ -1.25
CLN3-244ENST00000636147 CSMD2Q7Z408 3487 aa7.22□□□□□ -1.25
CLN3-244ENST00000636147 IGLV9-49A0A0B4J1Y8 123 aa7.22□□□□□ -1.25
CLN3-244ENST00000636147 TRAV22A0A0B4J277 110 aa7.22□□□□□ -1.25
CLN3-244ENST00000636147 KCNQ1DNQ9H478 68 aa7.22□□□□□ -1.25
CLN3-244ENST00000636147 hDV103S1A0JD37 113 aa7.2□□□□□ -1.26
CLN3-244ENST00000636147 LINC01556Q5JQF7 62 aa7.2□□□□□ -1.26
CLN3-244ENST00000636147 SPINK6Q6UWN8 80 aa7.19□□□□□ -1.26
CLN3-244ENST00000636147 BSNQ9UPA5 3926 aa7.19□□□□□ -1.26
CLN3-244ENST00000636147 KRTAP1-3Q8IUG1 177 aa7.19□□□□□ -1.26
CLN3-244ENST00000636147 IGLV1-50A0A075B6I6 118 aa7.16□□□□□ -1.26
CLN3-244ENST00000636147 NSD1Q96L73 2696 aaPredicted RBP7.16□□□□□ -1.26
CLN3-244ENST00000636147 SPAG11AQ6PDA7 123 aa7.16□□□□□ -1.26
CLN3-244ENST00000636147 IGLV5-48A0A075B6I7 105 aa7.15□□□□□ -1.26
CLN3-244ENST00000636147 DSCR10P59022 87 aa7.15□□□□□ -1.26
CLN3-244ENST00000636147 CASC10Q5T4H9 136 aa7.15□□□□□ -1.26
CLN3-244ENST00000636147 IGFL1Q6UW32 110 aa7.15□□□□□ -1.26
CLN3-244ENST00000636147 IGHV6-1A0A0B4J1U7 121 aa7.15□□□□□ -1.27
CLN3-244ENST00000636147 A0A1B0GW54 56 aa7.14□□□□□ -1.27
CLN3-244ENST00000636147 LIMD2Q9BT23 127 aa7.14□□□□□ -1.27
CLN3-244ENST00000636147 CHTF8P0CG12 524 aa7.11□□□□□ -1.27
CLN3-244ENST00000636147 KMT2BQ9UMN6 2715 aaPredicted RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 219.2 ms