RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 SPRR1AP35321 89 aa11.6□□□□□ -0.55
SQSTM1-216ENST00000626660 PRLHP81277 87 aa11.6□□□□□ -0.55
SQSTM1-216ENST00000626660 SMIM6P0DI80 62 aa11.59□□□□□ -0.55
SQSTM1-216ENST00000626660 C2orf91Q6ZV80 131 aa11.59□□□□□ -0.55
SQSTM1-216ENST00000626660 KRTAP13-1Q8IUC0 172 aa11.59□□□□□ -0.55
SQSTM1-216ENST00000626660 A6NDN8 102 aa11.58□□□□□ -0.56
SQSTM1-216ENST00000626660 TRAV13-2A0A0B4J235 113 aa11.57□□□□□ -0.56
SQSTM1-216ENST00000626660 A4D1N5 150 aa11.57□□□□□ -0.56
SQSTM1-216ENST00000626660 KRTAP29-1A8MX34 341 aaPredicted RBP11.57□□□□□ -0.56
SQSTM1-216ENST00000626660 ZNF73O43830 326 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-216ENST00000626660 UQCR10Q9UDW1 63 aa11.56□□□□□ -0.56
SQSTM1-216ENST00000626660 KRTAP4-16G5E9R7 235 aaPredicted RBP11.55□□□□□ -0.56
SQSTM1-216ENST00000626660 HINT1P49773 126 aaPredicted RBP11.55□□□□□ -0.56
SQSTM1-216ENST00000626660 TAL2Q16559 108 aa11.55□□□□□ -0.56
SQSTM1-216ENST00000626660 LOC105371267A0A1B0GV96 52 aa11.54□□□□□ -0.56
SQSTM1-216ENST00000626660 HIGD2AQ9BW72 106 aa11.54□□□□□ -0.56
SQSTM1-216ENST00000626660 MYCBP2O75592 4640 aa11.54□□□□□ -0.56
SQSTM1-216ENST00000626660 B5MCH6 92 aa11.52□□□□□ -0.57
SQSTM1-216ENST00000626660 LINC01600Q96MT4 127 aa11.51□□□□□ -0.57
SQSTM1-216ENST00000626660 Q6ZRX8 168 aa11.5□□□□□ -0.57
SQSTM1-216ENST00000626660 C12orf57Q99622 126 aa11.5□□□□□ -0.57
SQSTM1-216ENST00000626660 CEND1Q8N111 149 aa11.49□□□□□ -0.57
SQSTM1-216ENST00000626660 TMEM238LA0A1B0GVL6 79 aa11.48□□□□□ -0.57
SQSTM1-216ENST00000626660 A6NJY4 79 aa11.48□□□□□ -0.57
SQSTM1-216ENST00000626660 HSD52Q0P140 79 aa11.48□□□□□ -0.57
SQSTM1-216ENST00000626660 C6orf99Q4VX62 202 aa11.47□□□□□ -0.57
SQSTM1-216ENST00000626660 PRO1933Q9H354 126 aa11.47□□□□□ -0.57
SQSTM1-216ENST00000626660 LRP1Q07954 4544 aaKnown RBP11.47□□□□□ -0.57
SQSTM1-216ENST00000626660 KRTAP1-4P0C5Y4 121 aa11.46□□□□□ -0.57
SQSTM1-216ENST00000626660 COX7BP24311 80 aa11.46□□□□□ -0.57
SQSTM1-216ENST00000626660 RPL13AP40429 203 aaKnown RBP11.46□□□□□ -0.57
SQSTM1-216ENST00000626660 SMCR5Q8TEV8 140 aa11.46□□□□□ -0.57
SQSTM1-216ENST00000626660 RAB37Q96AX2 223 aa11.46□□□□□ -0.57
SQSTM1-216ENST00000626660 ZNF706Q9Y5V0 76 aaPredicted RBP11.46□□□□□ -0.57
SQSTM1-216ENST00000626660 FAT3Q8TDW7 4589 aa11.45□□□□□ -0.58
SQSTM1-216ENST00000626660 SMIM11BQ8TCY0 68 aa11.45□□□□□ -0.58
SQSTM1-216ENST00000626660 TRBV7-6A0A0J9YX20 115 aa11.44□□□□□ -0.58
SQSTM1-216ENST00000626660 CFC1BP0CG36 223 aa11.44□□□□□ -0.58
SQSTM1-216ENST00000626660 CFC1P0CG37 223 aa11.44□□□□□ -0.58
SQSTM1-216ENST00000626660 A0A0B4J2C4 111 aa11.43□□□□□ -0.58
SQSTM1-216ENST00000626660 ELOF1P60002 83 aaKnown RBP11.43□□□□□ -0.58
SQSTM1-216ENST00000626660 Q9BRP9 147 aa11.43□□□□□ -0.58
SQSTM1-216ENST00000626660 A0A1B0GWB2 263 aa11.42□□□□□ -0.58
SQSTM1-216ENST00000626660 FXYD2P54710 66 aa11.42□□□□□ -0.58
SQSTM1-216ENST00000626660 DHRS4-AS1Q9P1J3 65 aa11.42□□□□□ -0.58
SQSTM1-216ENST00000626660 MT1HL1P0DM35 61 aa11.41□□□□□ -0.58
SQSTM1-216ENST00000626660 VAMP3Q15836 100 aa11.41□□□□□ -0.58
SQSTM1-216ENST00000626660 PRR26Q8N8Z3 221 aa11.41□□□□□ -0.58
SQSTM1-216ENST00000626660 SPRR4Q96PI1 79 aa11.4□□□□□ -0.58
SQSTM1-216ENST00000626660 TSTD3H0UI37 97 aa11.39□□□□□ -0.59
SQSTM1-216ENST00000626660 ERC2-IT1O76042 136 aa11.39□□□□□ -0.59
SQSTM1-216ENST00000626660 CRYGAP11844 174 aa11.39□□□□□ -0.59
SQSTM1-216ENST00000626660 KRTAP10-8P60410 259 aa11.39□□□□□ -0.59
SQSTM1-216ENST00000626660 FAM229BQ4G0N7 80 aa11.39□□□□□ -0.59
SQSTM1-216ENST00000626660 ANAPC11Q9NYG5 84 aa11.39□□□□□ -0.59
SQSTM1-216ENST00000626660 H7C2G1 150 aa11.38□□□□□ -0.59
SQSTM1-216ENST00000626660 PRO1854Q9UHT4 67 aa11.37□□□□□ -0.59
SQSTM1-216ENST00000626660 NHP2Q9NX24 153 aaKnown RBP11.36□□□□□ -0.59
SQSTM1-216ENST00000626660 Q1RN00 199 aa11.35□□□□□ -0.59
SQSTM1-216ENST00000626660 GAGE2AQ6NT46 116 aa11.35□□□□□ -0.59
SQSTM1-216ENST00000626660 A0A087X002 238 aa11.34□□□□□ -0.59
SQSTM1-216ENST00000626660 BVES-AS1Q5T3Y7 98 aa11.34□□□□□ -0.59
SQSTM1-216ENST00000626660 SLC25A20O43772 301 aa11.33□□□□□ -0.6
SQSTM1-216ENST00000626660 CTAG1AP78358 180 aa11.32□□□□□ -0.6
SQSTM1-216ENST00000626660 M0R143 59 aa11.31□□□□□ -0.6
SQSTM1-216ENST00000626660 LINC00483Q53H64 154 aa11.31□□□□□ -0.6
SQSTM1-216ENST00000626660 ST20-AS1Q8NBB2 130 aa11.31□□□□□ -0.6
SQSTM1-216ENST00000626660 TYMSOSQ8TAI1 123 aa11.31□□□□□ -0.6
SQSTM1-216ENST00000626660 K7ERJ3 54 aa11.29□□□□□ -0.6
SQSTM1-216ENST00000626660 TNXBP22105 4242 aa11.29□□□□□ -0.6
SQSTM1-216ENST00000626660 KRTAP13-2Q52LG2 175 aa11.28□□□□□ -0.6
SQSTM1-216ENST00000626660 LINC00575Q6W349 94 aa11.28□□□□□ -0.6
SQSTM1-216ENST00000626660 H0YGX0 51 aa11.26□□□□□ -0.61
SQSTM1-216ENST00000626660 hADV29S1A0JD25 119 aa11.25□□□□□ -0.61
SQSTM1-216ENST00000626660 C3orf22Q8N5N4 141 aa11.25□□□□□ -0.61
SQSTM1-216ENST00000626660 SNCGO76070 127 aa11.24□□□□□ -0.61
SQSTM1-216ENST00000626660 SPRR1BP22528 89 aa11.24□□□□□ -0.61
SQSTM1-216ENST00000626660 DEFB105AQ8NG35 78 aa11.24□□□□□ -0.61
SQSTM1-216ENST00000626660 PSMB2P49721 201 aa11.23□□□□□ -0.61
SQSTM1-216ENST00000626660 TEX49A0A1B0GTD5 131 aa11.22□□□□□ -0.61
SQSTM1-216ENST00000626660 IGLV9-49A0A0B4J1Y8 123 aa11.21□□□□□ -0.61
SQSTM1-216ENST00000626660 TRIAP1O43715 76 aa11.21□□□□□ -0.61
SQSTM1-216ENST00000626660 TSPAN13O95857 204 aa11.21□□□□□ -0.61
SQSTM1-216ENST00000626660 COX6CP09669 75 aa11.2□□□□□ -0.62
SQSTM1-216ENST00000626660 LAMTOR3Q9UHA4 124 aa11.2□□□□□ -0.62
SQSTM1-216ENST00000626660 UBR4Q5T4S7 5183 aa11.19□□□□□ -0.62
SQSTM1-216ENST00000626660 IGLV5-48A0A075B6I7 105 aa11.19□□□□□ -0.62
SQSTM1-216ENST00000626660 MOBPQ13875 183 aa11.19□□□□□ -0.62
SQSTM1-216ENST00000626660 Q6ZQY7 126 aa11.19□□□□□ -0.62
SQSTM1-216ENST00000626660 C9orf153Q5TBE3 101 aa11.18□□□□□ -0.62
SQSTM1-216ENST00000626660 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.18□□□□□ -0.62
SQSTM1-216ENST00000626660 LINC00304Q8N9R0 145 aa11.18□□□□□ -0.62
SQSTM1-216ENST00000626660 LINC01547P58512 204 aaPredicted RBP11.16□□□□□ -0.62
SQSTM1-216ENST00000626660 SSBP3-AS1Q7Z2R9 100 aa11.16□□□□□ -0.62
SQSTM1-216ENST00000626660 HMCN2Q8NDA2 5059 aa11.16□□□□□ -0.62
SQSTM1-216ENST00000626660 A0A1B0GX51 115 aa11.15□□□□□ -0.62
SQSTM1-216ENST00000626660 BATFQ16520 125 aa11.15□□□□□ -0.62
SQSTM1-216ENST00000626660 C4orf48Q5BLP8 95 aa11.15□□□□□ -0.62
SQSTM1-216ENST00000626660 Q8NBF4 154 aa11.15□□□□□ -0.62
SQSTM1-216ENST00000626660 Q8N377 158 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms