RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ZNF575Q86XF7 245 aa7.43□□□□□ -1.22
CLIP1-219ENST00000620786 CASC10Q5T4H9 136 aa7.43□□□□□ -1.22
CLIP1-219ENST00000620786 UTRNP46939 3433 aa7.43□□□□□ -1.22
CLIP1-219ENST00000620786 TLX1NBP0CAT3 122 aa7.43□□□□□ -1.22
CLIP1-219ENST00000620786 CHD8Q9HCK8 2581 aa7.42□□□□□ -1.22
CLIP1-219ENST00000620786 PSORS1C2Q9UIG4 136 aa7.42□□□□□ -1.22
CLIP1-219ENST00000620786 A0A1W2PNN7 141 aa7.42□□□□□ -1.22
CLIP1-219ENST00000620786 C8orf17Q9NRJ1 99 aa7.41□□□□□ -1.22
CLIP1-219ENST00000620786 PLA2G2DQ9UNK4 145 aa7.41□□□□□ -1.22
CLIP1-219ENST00000620786 PRO0461Q9UI25 63 aa7.41□□□□□ -1.22
CLIP1-219ENST00000620786 A0A1B0GVX0 72 aa7.39□□□□□ -1.23
CLIP1-219ENST00000620786 A0A0G2JQZ4 141 aa7.39□□□□□ -1.23
CLIP1-219ENST00000620786 CNBPP62633 177 aaKnown RBP7.38□□□□□ -1.23
CLIP1-219ENST00000620786 IGLV5-37A0A075B6J1 123 aa7.38□□□□□ -1.23
CLIP1-219ENST00000620786 RBM12B-AS1Q9P1G2 102 aa7.38□□□□□ -1.23
CLIP1-219ENST00000620786 Q8N377 158 aa7.37□□□□□ -1.23
CLIP1-219ENST00000620786 PRR15Q8IV56 129 aa7.36□□□□□ -1.23
CLIP1-219ENST00000620786 SPRR4Q96PI1 79 aa7.36□□□□□ -1.23
CLIP1-219ENST00000620786 TNP2Q05952 138 aa7.35□□□□□ -1.23
CLIP1-219ENST00000620786 USP9YO00507 2555 aaPredicted RBP7.35□□□□□ -1.23
CLIP1-219ENST00000620786 CENPFP49454 3210 aa7.34□□□□□ -1.23
CLIP1-219ENST00000620786 PKD1L2Q7Z442 2459 aa7.34□□□□□ -1.23
CLIP1-219ENST00000620786 POLQO75417 2590 aa7.33□□□□□ -1.24
CLIP1-219ENST00000620786 EIF4EBP3O60516 100 aaPredicted RBP7.33□□□□□ -1.24
CLIP1-219ENST00000620786 SETD2Q9BYW2 2564 aaPredicted RBP7.33□□□□□ -1.24
CLIP1-219ENST00000620786 COA5Q86WW8 74 aa7.33□□□□□ -1.24
CLIP1-219ENST00000620786 LINC01600Q96MT4 127 aa7.33□□□□□ -1.24
CLIP1-219ENST00000620786 F8P00451 2351 aa7.32□□□□□ -1.24
CLIP1-219ENST00000620786 FASNP49327 2511 aaKnown RBP7.31□□□□□ -1.24
CLIP1-219ENST00000620786 MTORP42345 2549 aa7.3□□□□□ -1.24
CLIP1-219ENST00000620786 ERC2-IT1O76042 136 aa7.3□□□□□ -1.24
CLIP1-219ENST00000620786 ACANP16112 2415 aa7.3□□□□□ -1.24
CLIP1-219ENST00000620786 SPINT4Q6UDR6 99 aa7.25□□□□□ -1.25
CLIP1-219ENST00000620786 Q6ZSA8 131 aa7.25□□□□□ -1.25
CLIP1-219ENST00000620786 C4orf26Q17RF5 130 aa7.24□□□□□ -1.25
CLIP1-219ENST00000620786 LINC01554Q52M75 96 aa7.24□□□□□ -1.25
CLIP1-219ENST00000620786 IGLV7-46A0A075B6I9 117 aa7.23□□□□□ -1.25
CLIP1-219ENST00000620786 UQCR11O14957 56 aa7.23□□□□□ -1.25
CLIP1-219ENST00000620786 PRR26Q8N8Z3 221 aa7.22□□□□□ -1.25
CLIP1-219ENST00000620786 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.22□□□□□ -1.25
CLIP1-219ENST00000620786 PRO0628Q9UI54 55 aa7.22□□□□□ -1.25
CLIP1-219ENST00000620786 Q8N1X5 172 aa7.21□□□□□ -1.25
CLIP1-219ENST00000620786 IGLV5-48A0A075B6I7 105 aa7.21□□□□□ -1.26
CLIP1-219ENST00000620786 A0A1W2PNM2 257 aa7.19□□□□□ -1.26
CLIP1-219ENST00000620786 M0R2T5 61 aa7.19□□□□□ -1.26
CLIP1-219ENST00000620786 RPS28P62857 69 aaKnown RBP7.19□□□□□ -1.26
CLIP1-219ENST00000620786 CRIPTQ9P021 101 aa7.18□□□□□ -1.26
CLIP1-219ENST00000620786 MIR22HGQ0VDD5 57 aa7.18□□□□□ -1.26
CLIP1-219ENST00000620786 A8MUN3 132 aa7.18□□□□□ -1.26
CLIP1-219ENST00000620786 CD164Q04900 197 aa7.17□□□□□ -1.26
CLIP1-219ENST00000620786 A0A0D9SG42 100 aa7.16□□□□□ -1.26
CLIP1-219ENST00000620786 WIPF1O43516 503 aa7.15□□□□□ -1.26
CLIP1-219ENST00000620786 CYP4F30PQ9H0H9 118 aa7.14□□□□□ -1.27
CLIP1-219ENST00000620786 FAM104AQ969W3 186 aa7.14□□□□□ -1.27
CLIP1-219ENST00000620786 EPG5Q9HCE0 2579 aa7.13□□□□□ -1.27
CLIP1-219ENST00000620786 HECTD1Q9ULT8 2610 aa7.12□□□□□ -1.27
CLIP1-219ENST00000620786 PLAC8Q9NZF1 115 aa7.11□□□□□ -1.27
CLIP1-219ENST00000620786 FAM229BQ4G0N7 80 aa7.11□□□□□ -1.27
CLIP1-219ENST00000620786 PCNTO95613 3336 aa7.08□□□□□ -1.28
CLIP1-219ENST00000620786 KLKP1Q107X0 134 aa7.08□□□□□ -1.28
CLIP1-219ENST00000620786 Q5VSD8 79 aa7.07□□□□□ -1.28
CLIP1-219ENST00000620786 LCE6AA0A183 80 aa7.05□□□□□ -1.28
CLIP1-219ENST00000620786 CR1P17927 2039 aa7.04□□□□□ -1.28
CLIP1-219ENST00000620786 CDC42SE1Q9NRR8 79 aa7.04□□□□□ -1.28
CLIP1-219ENST00000620786 SPANXA2-OT1Q8N9U9 137 aa7.02□□□□□ -1.29
CLIP1-219ENST00000620786 CAMK2N1Q7Z7J9 78 aa7.01□□□□□ -1.29
CLIP1-219ENST00000620786 H7BZZ5 65 aa7□□□□□ -1.29
CLIP1-219ENST00000620786 ZCCHC13Q8WW36 166 aaKnown RBP6.99□□□□□ -1.29
CLIP1-219ENST00000620786 FLNBO75369 2602 aaKnown RBP6.98□□□□□ -1.29
CLIP1-219ENST00000620786 S4R3F8 94 aa6.98□□□□□ -1.29
CLIP1-219ENST00000620786 KRTAP1-5Q9BYS1 174 aa6.97□□□□□ -1.29
CLIP1-219ENST00000620786 KRTAP10-1P60331 282 aa6.97□□□□□ -1.29
CLIP1-219ENST00000620786 SEC61BP60468 96 aaKnown RBP6.96□□□□□ -1.3
CLIP1-219ENST00000620786 DNAH12Q6ZR08 3092 aa6.96□□□□□ -1.3
CLIP1-219ENST00000620786 HRES1P13985 223 aa6.96□□□□□ -1.3
CLIP1-219ENST00000620786 KRTAP10-2P60368 255 aa6.95□□□□□ -1.3
CLIP1-219ENST00000620786 CSAG1Q6PB30 78 aa6.94□□□□□ -1.3
CLIP1-219ENST00000620786 MGAM2Q2M2H8 2515 aa6.93□□□□□ -1.3
CLIP1-219ENST00000620786 SPRR1AP35321 89 aa6.92□□□□□ -1.3
CLIP1-219ENST00000620786 FLNAP21333 2647 aaKnown RBP6.91□□□□□ -1.3
CLIP1-219ENST00000620786 MMP24-AS1A0A0U1RRL7 71 aa6.91□□□□□ -1.3
CLIP1-219ENST00000620786 Q8NDZ9 215 aa6.91□□□□□ -1.3
CLIP1-219ENST00000620786 OCR1Q9BZK8 76 aa6.91□□□□□ -1.3
CLIP1-219ENST00000620786 A0A1B0GU33 70 aa6.9□□□□□ -1.3
CLIP1-219ENST00000620786 ITPR3Q14573 2671 aa6.88□□□□□ -1.31
CLIP1-219ENST00000620786 LINC00483Q53H64 154 aa6.87□□□□□ -1.31
CLIP1-219ENST00000620786 Q8N9P0 234 aaPredicted RBP6.87□□□□□ -1.31
CLIP1-219ENST00000620786 USP24Q9UPU5 2620 aa6.87□□□□□ -1.31
CLIP1-219ENST00000620786 HELZ2Q9BYK8 2649 aaKnown RBP6.86□□□□□ -1.31
CLIP1-219ENST00000620786 SPINK7P58062 85 aa6.86□□□□□ -1.31
CLIP1-219ENST00000620786 SPRR1BP22528 89 aa6.86□□□□□ -1.31
CLIP1-219ENST00000620786 Q5W150 140 aa6.85□□□□□ -1.31
CLIP1-219ENST00000620786 KRTAP26-1Q6PEX3 210 aa6.83□□□□□ -1.32
CLIP1-219ENST00000620786 OXTP01178 125 aa6.82□□□□□ -1.32
CLIP1-219ENST00000620786 Q1T7F1 81 aa6.82□□□□□ -1.32
CLIP1-219ENST00000620786 CEP350Q5VT06 3117 aa6.81□□□□□ -1.32
CLIP1-219ENST00000620786 KTN1-AS1Q86SY8 53 aa6.81□□□□□ -1.32
CLIP1-219ENST00000620786 R4GN34 69 aa6.81□□□□□ -1.32
CLIP1-219ENST00000620786 LINC00472Q9H8W2 130 aa6.8□□□□□ -1.32
CLIP1-219ENST00000620786 LUZP6Q538Z0 58 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 225.2 ms