RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 HERVK_113P61574 105 aa13.69□□□□□ -0.22
PTPRF-216ENST00000617451 DPM2O94777 84 aa13.68□□□□□ -0.22
PTPRF-216ENST00000617451 LGALS3P17931 250 aaKnown RBP13.68□□□□□ -0.22
PTPRF-216ENST00000617451 LINC00310P59036 64 aa13.68□□□□□ -0.22
PTPRF-216ENST00000617451 SOSTDC1Q6X4U4 206 aa13.68□□□□□ -0.22
PTPRF-216ENST00000617451 C5orf52A6NGY3 159 aa13.67□□□□□ -0.22
PTPRF-216ENST00000617451 EIF4EBP3O60516 100 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-216ENST00000617451 PMCHL2Q9BQD1 86 aa13.66□□□□□ -0.22
PTPRF-216ENST00000617451 SERF1AO75920 110 aa13.65□□□□□ -0.22
PTPRF-216ENST00000617451 NPC2P61916 151 aa13.64□□□□□ -0.23
PTPRF-216ENST00000617451 ADAMTSL4-AS1Q5T5F5 129 aa13.64□□□□□ -0.23
PTPRF-216ENST00000617451 CRCT1Q9UGL9 99 aa13.64□□□□□ -0.23
PTPRF-216ENST00000617451 HSPB8Q9UJY1 196 aa13.64□□□□□ -0.23
PTPRF-216ENST00000617451 IGKCP01834 107 aa13.63□□□□□ -0.23
PTPRF-216ENST00000617451 TRGC2P03986 189 aa13.63□□□□□ -0.23
PTPRF-216ENST00000617451 KRTAP19-2Q3LHN2 52 aa13.63□□□□□ -0.23
PTPRF-216ENST00000617451 A0A0J9YXY3 114 aa13.62□□□□□ -0.23
PTPRF-216ENST00000617451 HINT1P49773 126 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-216ENST00000617451 FABP4P15090 132 aa13.6□□□□□ -0.23
PTPRF-216ENST00000617451 SPRR1BP22528 89 aa13.6□□□□□ -0.23
PTPRF-216ENST00000617451 CBY1Q9Y3M2 126 aa13.6□□□□□ -0.23
PTPRF-216ENST00000617451 LIMD2Q9BT23 127 aa13.59□□□□□ -0.23
PTPRF-216ENST00000617451 PCOTHQ58A44 107 aa13.58□□□□□ -0.24
PTPRF-216ENST00000617451 MT1HP80294 61 aa13.56□□□□□ -0.24
PTPRF-216ENST00000617451 SLC25A34Q6PIV7 304 aa13.56□□□□□ -0.24
PTPRF-216ENST00000617451 HRCT1Q6UXD1 115 aa13.56□□□□□ -0.24
PTPRF-216ENST00000617451 IGLV8-61A0A075B6I0 122 aa13.54□□□□□ -0.24
PTPRF-216ENST00000617451 E9PLD3 99 aa13.54□□□□□ -0.24
PTPRF-216ENST00000617451 DHRS4-AS1Q9P1J3 65 aa13.54□□□□□ -0.24
PTPRF-216ENST00000617451 C9orf92A6NGG3 77 aa13.53□□□□□ -0.24
PTPRF-216ENST00000617451 SPANXCQ9NY87 97 aa13.53□□□□□ -0.24
PTPRF-216ENST00000617451 OR13C6PQ8NH95 151 aa13.51□□□□□ -0.25
PTPRF-216ENST00000617451 LINC00308Q8TCZ7 52 aa13.51□□□□□ -0.25
PTPRF-216ENST00000617451 LITAFQ99732 161 aa13.51□□□□□ -0.25
PTPRF-216ENST00000617451 LAMTOR3Q9UHA4 124 aa13.51□□□□□ -0.25
PTPRF-216ENST00000617451 CFC1BP0CG36 223 aa13.47□□□□□ -0.25
PTPRF-216ENST00000617451 CD164Q04900 197 aa13.46□□□□□ -0.25
PTPRF-216ENST00000617451 SPANXDQ9BXN6 97 aa13.46□□□□□ -0.25
PTPRF-216ENST00000617451 TIMM17BO60830 172 aa13.45□□□□□ -0.26
PTPRF-216ENST00000617451 ELOF1P60002 83 aaKnown RBP13.45□□□□□ -0.26
PTPRF-216ENST00000617451 COX7BP24311 80 aa13.43□□□□□ -0.26
PTPRF-216ENST00000617451 Q1RN00 199 aa13.42□□□□□ -0.26
PTPRF-216ENST00000617451 PRO1933Q9H354 126 aa13.42□□□□□ -0.26
PTPRF-216ENST00000617451 TAL2Q16559 108 aa13.41□□□□□ -0.26
PTPRF-216ENST00000617451 C6orf99Q4VX62 202 aa13.41□□□□□ -0.26
PTPRF-216ENST00000617451 DEFB105AQ8NG35 78 aa13.4□□□□□ -0.26
PTPRF-216ENST00000617451 SYS1-DBNDD2H3BUS1 97 aa13.39□□□□□ -0.27
PTPRF-216ENST00000617451 LORP23490 312 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-216ENST00000617451 LINC00518Q8N0U6 118 aa13.39□□□□□ -0.27
PTPRF-216ENST00000617451 TEX49A0A1B0GTD5 131 aa13.38□□□□□ -0.27
PTPRF-216ENST00000617451 Q5XG85 94 aa13.38□□□□□ -0.27
PTPRF-216ENST00000617451 COLCA2A8K830 154 aa13.37□□□□□ -0.27
PTPRF-216ENST00000617451 H7C2G1 150 aa13.37□□□□□ -0.27
PTPRF-216ENST00000617451 ZNF815PA8K554 130 aa13.36□□□□□ -0.27
PTPRF-216ENST00000617451 KRTAP10-6P60371 365 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-216ENST00000617451 C1orf195Q5TG92 126 aa13.35□□□□□ -0.27
PTPRF-216ENST00000617451 SMIM29Q86T20 159 aa13.35□□□□□ -0.27
PTPRF-216ENST00000617451 AKR1D1P51857 326 aa13.34□□□□□ -0.27
PTPRF-216ENST00000617451 TRBV7-6A0A0J9YX20 115 aa13.33□□□□□ -0.28
PTPRF-216ENST00000617451 LINC01545Q5VT33 79 aa13.33□□□□□ -0.28
PTPRF-216ENST00000617451 TTTY13Q9BZ97 58 aa13.33□□□□□ -0.28
PTPRF-216ENST00000617451 FLGP20930 4061 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-216ENST00000617451 RPL37P61927 97 aaKnown RBP13.29□□□□□ -0.28
PTPRF-216ENST00000617451 IGLV5-48A0A075B6I7 105 aa13.28□□□□□ -0.28
PTPRF-216ENST00000617451 A0A0G2JQZ4 141 aa13.28□□□□□ -0.28
PTPRF-216ENST00000617451 PET117Q6UWS5 81 aa13.28□□□□□ -0.28
PTPRF-216ENST00000617451 A0A1B0GWB2 263 aa13.27□□□□□ -0.29
PTPRF-216ENST00000617451 M0R2T5 61 aa13.25□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BKO60814 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BJP06899 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BOP23527 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BBP33778 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BDP58876 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BCP62807 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST2H2BEQ16778 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BHQ93079 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BNQ99877 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 HIST1H2BMQ99879 126 aa13.23□□□□□ -0.29
PTPRF-216ENST00000617451 COX6B2Q6YFQ2 88 aa13.21□□□□□ -0.29
PTPRF-216ENST00000617451 A6NDN8 102 aa13.2□□□□□ -0.3
PTPRF-216ENST00000617451 SCGB1D4Q6XE38 83 aa13.2□□□□□ -0.3
PTPRF-216ENST00000617451 COPS9Q8WXC6 57 aa13.2□□□□□ -0.3
PTPRF-216ENST00000617451 A4D1N5 150 aa13.18□□□□□ -0.3
PTPRF-216ENST00000617451 C3orf79P0CE67 100 aa13.18□□□□□ -0.3
PTPRF-216ENST00000617451 IFITM1P13164 125 aa13.18□□□□□ -0.3
PTPRF-216ENST00000617451 SLC7A5P1Q8MH63 180 aa13.17□□□□□ -0.3
PTPRF-216ENST00000617451 TCL1BO95988 128 aa13.16□□□□□ -0.3
PTPRF-216ENST00000617451 Q6ZVH6 145 aa13.14□□□□□ -0.31
PTPRF-216ENST00000617451 MUSTN1Q8IVN3 82 aa13.13□□□□□ -0.31
PTPRF-216ENST00000617451 NHP2Q9NX24 153 aaKnown RBP13.13□□□□□ -0.31
PTPRF-216ENST00000617451 ANKRD39Q53RE8 183 aa13.11□□□□□ -0.31
PTPRF-216ENST00000617451 KRTDAPP60985 99 aa13.1□□□□□ -0.31
PTPRF-216ENST00000617451 SMIM11BQ8TCY0 68 aa13.1□□□□□ -0.31
PTPRF-216ENST00000617451 TRAV13-2A0A0B4J235 113 aa13.08□□□□□ -0.32
PTPRF-216ENST00000617451 F8WEM9 126 aa13.05□□□□□ -0.32
PTPRF-216ENST00000617451 PCP2Q8IVA1 136 aa13.05□□□□□ -0.32
PTPRF-216ENST00000617451 C20orf202A1L168 122 aa13.03□□□□□ -0.32
PTPRF-216ENST00000617451 COA6Q5JTJ3 125 aaKnown RBP13.03□□□□□ -0.32
PTPRF-216ENST00000617451 ATOH7Q8N100 152 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms